AbstractElement< ELEMENT_DIM, SPACE_DIM > Class Template Reference

#include <AbstractElement.hpp>

Inheritance diagram for AbstractElement< ELEMENT_DIM, SPACE_DIM >:

Collaboration diagram for AbstractElement< ELEMENT_DIM, SPACE_DIM >:

Public Member Functions
	AbstractElement (unsigned index, const std::vector< Node< SPACE_DIM > * > &rNodes)
	AbstractElement (unsigned index=INDEX_IS_NOT_USED)
virtual	~AbstractElement ()
virtual void	UpdateNode (const unsigned &rIndex, Node< SPACE_DIM > *pNode)=0
void	ReplaceNode (Node< SPACE_DIM > *pOldNode, Node< SPACE_DIM > *pNewNode)
virtual void	MarkAsDeleted ()=0
virtual void	RegisterWithNodes ()=0
double	GetNodeLocation (unsigned localIndex, unsigned dimension) const
c_vector< double, SPACE_DIM >	GetNodeLocation (unsigned localIndex) const
unsigned	GetNodeGlobalIndex (unsigned localIndex) const
Node< SPACE_DIM > *	GetNode (unsigned localIndex) const
unsigned	GetNumNodes () const
void	AddNode (Node< SPACE_DIM > *pNode)
bool	IsDeleted () const
unsigned	GetIndex () const
void	SetIndex (unsigned index)
bool	GetOwnership () const
void	SetOwnership (bool ownership)
void	SetAttribute (double attribute)
double	GetAttribute ()
unsigned	GetUnsignedAttribute ()
void	AddElementAttribute (double attribute)
std::vector< double > &	rGetElementAttributes ()
unsigned	GetNumElementAttributes ()

Protected Member Functions
void	ConstructElementAttributes ()

Protected Attributes
std::vector< Node< SPACE_DIM > * >	mNodes
unsigned	mIndex
bool	mIsDeleted
bool	mOwnership
ElementAttributes< ELEMENT_DIM, SPACE_DIM > *	mpElementAttributes

Detailed Description

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
class AbstractElement< ELEMENT_DIM, SPACE_DIM >

An abstract element class for use in finite element meshes.

Definition at line 55 of file AbstractElement.hpp.

Constructor & Destructor Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

AbstractElement< ELEMENT_DIM, SPACE_DIM >::AbstractElement	(	unsigned	index,
		const std::vector< Node< SPACE_DIM > * > &	rNodes
	)

Constructor which takes in a vector of nodes.

Parameters

index	the index of the element in the mesh
rNodes	the nodes owned by the element

Definition at line 48 of file AbstractElement.cpp.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

AbstractElement< ELEMENT_DIM, SPACE_DIM >::AbstractElement

(

unsigned

index = INDEX_IS_NOT_USED

)

Default constructor, which doesn't add any nodes: they must be added later.

Parameters

index

the index of the element in the mesh (defaults to INDEX_IS_NOT_USED)

Definition at line 60 of file AbstractElement.cpp.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

AbstractElement< ELEMENT_DIM, SPACE_DIM >::~AbstractElement ( )

virtual

Virtual destructor, since this class has virtual methods. Deletes added attributes (when they exist)

Definition at line 68 of file AbstractElement.cpp.

References AbstractElement< ELEMENT_DIM, SPACE_DIM >::mpElementAttributes.

Member Function Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

void AbstractElement< ELEMENT_DIM, SPACE_DIM >::AddElementAttribute

(

double

attribute

)

Add an attribute to the list of element attributes.

Parameters

attribute

the value of the attribute to be added

Definition at line 203 of file AbstractElement.cpp.

References AbstractElement< ELEMENT_DIM, SPACE_DIM >::ConstructElementAttributes(), and AbstractElement< ELEMENT_DIM, SPACE_DIM >::mpElementAttributes.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

void AbstractElement< ELEMENT_DIM, SPACE_DIM >::AddNode

(

Node< SPACE_DIM > *

pNode

)

Add a node to this element.

Parameters

pNode

pointer to the new node

Definition at line 129 of file AbstractElement.cpp.

References AbstractElement< ELEMENT_DIM, SPACE_DIM >::mNodes.

Referenced by QuadraticMeshHelper< DIM >::AddNodeToBoundaryElement().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

void AbstractElement< ELEMENT_DIM, SPACE_DIM >::ConstructElementAttributes ( )

protected

Construct an empty ElementAttributes container.

Definition at line 194 of file AbstractElement.cpp.

References AbstractElement< ELEMENT_DIM, SPACE_DIM >::mpElementAttributes.

Referenced by AbstractElement< ELEMENT_DIM, SPACE_DIM >::AddElementAttribute(), AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetAttribute(), and AbstractElement< ELEMENT_DIM, SPACE_DIM >::SetAttribute().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

double AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetAttribute

(

)

Returns

the element's attribute value

Definition at line 173 of file AbstractElement.cpp.

References AbstractElement< ELEMENT_DIM, SPACE_DIM >::ConstructElementAttributes(), and AbstractElement< ELEMENT_DIM, SPACE_DIM >::mpElementAttributes.

Referenced by MonodomainPurkinjeCableAssembler< ELEMENT_DIM, SPACE_DIM >::ComputeCableMatrixTerm(), MonodomainPurkinjeCableMassMatrixAssembler< ELEMENT_DIM, SPACE_DIM >::ComputeCableMatrixTerm(), AbstractPurkinjeCellFactory< ELEMENT_DIM, SPACE_DIM >::CreateJunction(), AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >::GetNextCableElement(), AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >::GetNextElement(), and AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetUnsignedAttribute().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

unsigned AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetIndex

(

)

const

Returns

the index of this element

Definition at line 141 of file AbstractElement.cpp.

References AbstractElement< ELEMENT_DIM, SPACE_DIM >::mIndex.

Referenced by AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >::AbstractCorrectionTermAssembler(), MutableMesh< ELEMENT_DIM, SPACE_DIM >::AddElement(), PottsMesh< DIM >::AddElement(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::AddElement(), FarhadifarForce< DIM >::AddForceContribution(), NagaiHondaForce< DIM >::AddForceContribution(), ContinuumMechanicsNeumannBcsAssembler< DIM >::AssembleOnBoundaryElement(), AbstractNonlinearElasticitySolver< DIM >::AssembleOnBoundaryElement(), AbstractNonlinearElasticitySolver< DIM >::AssembleOnBoundaryElementForPressureOnDeformedBc(), IncompressibleNonlinearElasticitySolver< DIM >::AssembleOnElement(), CompressibleNonlinearElasticitySolver< DIM >::AssembleOnElement(), AbstractFeVolumeIntegralAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >::AssembleOnElement(), AbstractContinuumMechanicsAssembler< DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX >::AssembleOnElement(), AbstractFeSurfaceIntegralAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::AssembleOnSurfaceElement(), MutableMesh< ELEMENT_DIM, SPACE_DIM >::CheckIsVoronoi(), ElectrodesStimulusFactory< DIM >::ComputeElectrodeTotalFlux(), AveragedSourceEllipticPde< DIM >::ComputeLinearInUCoeffInSourceTerm(), MonodomainStiffnessMatrixAssembler< ELEMENT_DIM, SPACE_DIM >::ComputeMatrixTerm(), BidomainAssembler< ELEMENT_DIM, SPACE_DIM >::ComputeMatrixTerm(), ExtendedBidomainAssembler< ELEMENT_DIM, SPACE_DIM >::ComputeMatrixTerm(), AveragedSourceParabolicPde< DIM >::ComputeSourceTerm(), MutableMesh< ELEMENT_DIM, SPACE_DIM >::DeleteBoundaryNodeAt(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::DivideElementAlongGivenAxis(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::DivideElementAlongShortAxis(), AbstractContinuumMechanicsAssembler< DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX >::DoAssemble(), AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >::ElementAssemblyCriterion(), AbstractNonlinearElasticitySolver< DIM >::GetElementCentroidStrain(), AbstractCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >::Initialise(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::MutableVertexMesh(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::PerformIntersectionSwap(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::PerformT2Swap(), PottsMesh< DIM >::PottsMesh(), Cylindrical2dMesh::ReconstructCylindricalMesh(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::VertexMesh(), StreeterFibreGenerator< SPACE_DIM >::Visit(), and StressPerElementWriter< DIM >::Visit().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

Node< SPACE_DIM > * AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetNode

(

unsigned

localIndex

)

const

Get the node with a given local index in this element.

Parameters

localIndex

local index of the node in this element

Returns

a pointer to the node.

Definition at line 116 of file AbstractElement.cpp.

References AbstractElement< ELEMENT_DIM, SPACE_DIM >::mNodes.

Referenced by VertexElement< ELEMENT_DIM, SPACE_DIM >::AddFace(), FarhadifarForce< DIM >::AddForceContribution(), NagaiHondaForce< DIM >::AddForceContribution(), BoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::AddNeumannBoundaryCondition(), QuadraticMeshHelper< DIM >::AddNodeToBoundaryElement(), BidomainProblem< DIM >::AnalyseMeshForBath(), AbstractNonlinearElasticitySolver< DIM >::AssembleOnBoundaryElementForPressureOnDeformedBc(), AbstractFeCableIntegralAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >::AssembleOnCableElement(), AbstractFeVolumeIntegralAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >::AssembleOnElement(), AbstractContinuumMechanicsAssembler< DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX >::AssembleOnElement(), AbstractFeSurfaceIntegralAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::AssembleOnSurfaceElement(), AbstractFunctionalCalculator< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::CalculateOnElement(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::CalculateUnitNormalToFaceWithArea(), MutableMesh< ELEMENT_DIM, SPACE_DIM >::CheckIsVoronoi(), MixedDimensionMesh< ELEMENT_DIM, SPACE_DIM >::ConstructFromMeshReader(), MutableMesh< ELEMENT_DIM, SPACE_DIM >::DeleteBoundaryNodeAt(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::DivideElement(), PottsMesh< DIM >::DivideElement(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::DivideElementAlongGivenAxis(), StreeterFibreGenerator< SPACE_DIM >::GetAveragedThicknessLocalNode(), PottsMesh< DIM >::GetNeighbouringElementIndices(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetNeighbouringElementIndices(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetRosetteRankOfElement(), PottsMesh< DIM >::GetSurfaceAreaOfElement(), MutableElement< ELEMENT_DIM, SPACE_DIM >::IsElementOnBoundary(), MutableElement< 1, SPACE_DIM >::IsElementOnBoundary(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::MutableVertexMesh(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::PerformT2Swap(), PottsMesh< DIM >::PottsMesh(), Cylindrical2dMesh::ReMesh(), FineCoarseMeshPair< DIM >::SetUpBoxes(), VertexElement< ELEMENT_DIM, SPACE_DIM >::VertexElement(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::VertexMesh(), StreeterFibreGenerator< SPACE_DIM >::Visit(), and DistanceMapCalculator< ELEMENT_DIM, SPACE_DIM >::WorkOnLocalQueue().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

unsigned AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetNodeGlobalIndex

(

unsigned

localIndex

)

const

Given the local index of a node owned by this element, return the global index of the node in the mesh.

Parameters

localIndex

the node's local index in this element

Returns

the global index

Definition at line 109 of file AbstractElement.cpp.

References AbstractElement< ELEMENT_DIM, SPACE_DIM >::mNodes.

Referenced by AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >::AbstractCorrectionTermAssembler(), QuadraticMeshHelper< DIM >::AddExtraBoundaryNodes(), VertexElement< ELEMENT_DIM, SPACE_DIM >::AddFace(), QuadraticMeshHelper< DIM >::AddNodesToBoundaryElements(), AbstractNonlinearElasticitySolver< DIM >::AssembleOnBoundaryElement(), AbstractNonlinearElasticitySolver< DIM >::AssembleOnBoundaryElementForPressureOnDeformedBc(), AbstractFeCableIntegralAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >::AssembleOnCableElement(), IncompressibleNonlinearElasticitySolver< DIM >::AssembleOnElement(), CompressibleNonlinearElasticitySolver< DIM >::AssembleOnElement(), AbstractFeVolumeIntegralAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >::AssembleOnElement(), CompressibleNonlinearElasticitySolver< DIM >::AssembleSystem(), IncompressibleNonlinearElasticitySolver< DIM >::AssembleSystem(), AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >::CalculateJacobian(), AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::CalculateMaximumNodeConnectivityPerProcess(), AbstractFunctionalCalculator< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::CalculateOnElement(), MutableMesh< ELEMENT_DIM, SPACE_DIM >::CheckIsVoronoi(), AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::CheckOutwardNormals(), AbstractCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >::ComputeDeformationGradientAndStretchInEachElement(), MonodomainCorrectionTermAssembler< ELEM_DIM, SPACE_DIM >::ComputeVectorTerm(), BidomainCorrectionTermAssembler< ELEM_DIM, SPACE_DIM >::ComputeVectorTerm(), EllipticBoxDomainPdeModifier< DIM >::ConstructBoundaryConditionsContainer(), AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::ConstructFromMesh(), Cylindrical2dMesh::CorrectNonPeriodicMesh(), MutableMesh< ELEMENT_DIM, SPACE_DIM >::DeleteNode(), AbstractContinuumMechanicsAssembler< DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX >::DoAssemble(), AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >::ElementAssemblyCriterion(), AbstractNonlinearElasticitySolver< DIM >::GetElementCentroidStrain(), MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >::GetNeighbouringNodeIndices(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetNeighbouringNodeNotAlsoInElement(), AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >::GetNextCableElement(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetNextEdgeGradientOfElementAtNode(), AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >::GetNextElement(), MutableElement< ELEMENT_DIM, SPACE_DIM >::GetNodeLocalIndex(), MutableElement< 1, SPACE_DIM >::GetNodeLocalIndex(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetPreviousEdgeGradientOfElementAtNode(), AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >::GetStiffnessMatrixGlobalIndices(), AbstractTetrahedralElement< 0, SPACE_DIM >::GetStiffnessMatrixGlobalIndices(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetSurfaceAreaOfElement(), VertexBasedCellPopulation< DIM >::GetTetrahedralMeshForPdeModifier(), QuadraticMeshHelper< DIM >::HelperMethod1(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::IdentifySwapType(), TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::EdgeIterator::operator++(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::PerformIntersectionSwap(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::PerformProtorosetteResolution(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::PerformRosetteRankDecrease(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::PerformT2Swap(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::PerformT3Swap(), Cylindrical2dMesh::ReconstructCylindricalMesh(), AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::SetElementOwnerships(), CellwiseDataGradient< DIM >::SetupGradients(), CardiacElectroMechanicsProblem< DIM, ELEC_PROB_DIM >::Solve(), MutableMesh< ELEMENT_DIM, SPACE_DIM >::SplitEdge(), AbstractBoxDomainPdeModifier< DIM >::UpdateCellData(), Cylindrical2dMesh::UseTheseElementsToDecideMeshing(), CellPopulationElementWriter< ELEMENT_DIM, SPACE_DIM >::Visit(), and VoltageInterpolaterOntoMechanicsMesh< DIM >::VoltageInterpolaterOntoMechanicsMesh().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

double AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetNodeLocation	(	unsigned	localIndex,
		unsigned	dimension
	)		const

Returns

a single component of the location in space of one of the nodes in this element.

Parameters

localIndex	the index of the node to query, in [0,N) where N is the number of nodes in this element.
dimension	the spatial dimension to query.

Definition at line 89 of file AbstractElement.cpp.

References AbstractElement< ELEMENT_DIM, SPACE_DIM >::mNodes.

Referenced by Element< ELEMENT_DIM, SPACE_DIM >::CalculateCircumsphere(), AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >::CalculateJacobian(), Element< ELEMENT_DIM, SPACE_DIM >::CalculateMinMaxEdgeLengths(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::CalculateMomentsOfElement(), Element< ELEMENT_DIM, SPACE_DIM >::CalculateXi(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::DivideElementAlongGivenAxis(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::ElementIncludesPoint(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetAreaGradientOfElementAtNode(), PottsMesh< DIM >::GetCentroidOfElement(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetCentroidOfElement(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetLocalIndexForElementEdgeClosestToPoint(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetNextEdgeGradientOfElementAtNode(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetPreviousEdgeGradientOfElementAtNode(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetVolumeOfElement(), and MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::PerformT3Swap().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

c_vector< double, SPACE_DIM > AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetNodeLocation

(

unsigned

localIndex

)

const

Returns

the location in space of one of the nodes in this element.

Parameters

localIndex

the index of the node to query, in [0,N) where N is the number of nodes in this element.

Definition at line 102 of file AbstractElement.cpp.

References AbstractElement< ELEMENT_DIM, SPACE_DIM >::mNodes.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

unsigned AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetNumElementAttributes

(

)

Returns

the number of node attributes associated with this node.

Definition at line 222 of file AbstractElement.cpp.

References AbstractElement< ELEMENT_DIM, SPACE_DIM >::mpElementAttributes.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

unsigned AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetNumNodes

(

)

const

Returns

the number of nodes owned by this element.

Definition at line 123 of file AbstractElement.cpp.

References AbstractElement< ELEMENT_DIM, SPACE_DIM >::mNodes.

Referenced by AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >::AbstractCorrectionTermAssembler(), VertexElement< ELEMENT_DIM, SPACE_DIM >::AddFace(), FarhadifarForce< DIM >::AddForceContribution(), NagaiHondaForce< DIM >::AddForceContribution(), BidomainProblem< DIM >::AnalyseMeshForBath(), AbstractNonlinearElasticitySolver< DIM >::AssembleOnBoundaryElementForPressureOnDeformedBc(), AbstractFeCableIntegralAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >::AssembleOnCableElement(), AbstractFeVolumeIntegralAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >::AssembleOnElement(), AbstractFeSurfaceIntegralAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::AssembleOnSurfaceElement(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::CalculateMomentsOfElement(), AbstractFunctionalCalculator< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::CalculateOnElement(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::CalculateUnitNormalToFaceWithArea(), MutableMesh< ELEMENT_DIM, SPACE_DIM >::CheckIsVoronoi(), ElectrodesStimulusFactory< DIM >::ComputeElectrodeTotalFlux(), AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::ConstructFromMesh(), MixedDimensionMesh< ELEMENT_DIM, SPACE_DIM >::ConstructFromMeshReader(), MutableMesh< ELEMENT_DIM, SPACE_DIM >::DeleteBoundaryNodeAt(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::DivideEdge(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::DivideElement(), PottsMesh< DIM >::DivideElement(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::DivideElementAlongGivenAxis(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::ElementIncludesPoint(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetAreaGradientOfElementAtNode(), PottsElement< DIM >::GetAspectRatio(), StreeterFibreGenerator< SPACE_DIM >::GetAveragedThicknessLocalNode(), PottsMesh< DIM >::GetCentroidOfElement(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetCentroidOfElement(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetLocalIndexForElementEdgeClosestToPoint(), PottsMesh< DIM >::GetNeighbouringElementIndices(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetNeighbouringElementIndices(), MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >::GetNeighbouringNodeIndices(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetNeighbouringNodeNotAlsoInElement(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetNextEdgeGradientOfElementAtNode(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetPreviousEdgeGradientOfElementAtNode(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetRosetteRankOfElement(), PottsMesh< DIM >::GetSurfaceAreaOfElement(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetSurfaceAreaOfElement(), VertexBasedCellPopulation< DIM >::GetTetrahedralMeshForPdeModifier(), PottsMesh< DIM >::GetVolumeOfElement(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetVolumeOfElement(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::IdentifySwapType(), Element< ELEMENT_DIM, SPACE_DIM >::MarkAsDeleted(), BoundaryElement< ELEMENT_DIM, SPACE_DIM >::MarkAsDeleted(), MutableElement< ELEMENT_DIM, SPACE_DIM >::MarkAsDeleted(), MutableElement< 1, SPACE_DIM >::MarkAsDeleted(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::MutableVertexMesh(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::PerformIntersectionSwap(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::PerformProtorosetteResolution(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::PerformRosetteRankDecrease(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::PerformT2Swap(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::PerformT3Swap(), PottsMesh< DIM >::PottsMesh(), BoundaryElement< ELEMENT_DIM, SPACE_DIM >::ResetIndex(), Element< ELEMENT_DIM, SPACE_DIM >::ResetIndex(), MutableElement< ELEMENT_DIM, SPACE_DIM >::ResetIndex(), MutableElement< 1, SPACE_DIM >::ResetIndex(), AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::SetElementOwnerships(), CardiacElectroMechanicsProblem< DIM, ELEC_PROB_DIM >::Solve(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::VertexMesh(), CellPopulationElementWriter< ELEMENT_DIM, SPACE_DIM >::Visit(), VoltageInterpolaterOntoMechanicsMesh< DIM >::VoltageInterpolaterOntoMechanicsMesh(), and DistanceMapCalculator< ELEMENT_DIM, SPACE_DIM >::WorkOnLocalQueue().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

bool AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetOwnership

(

)

const

Returns

whether the current process owns this element.

Definition at line 153 of file AbstractElement.cpp.

References AbstractElement< ELEMENT_DIM, SPACE_DIM >::mOwnership.

Referenced by AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >::AbstractCorrectionTermAssembler(), CompressibleNonlinearElasticitySolver< DIM >::AssembleSystem(), IncompressibleNonlinearElasticitySolver< DIM >::AssembleSystem(), AbstractFeCableIntegralAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >::DoAssemble(), AbstractFeVolumeIntegralAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >::DoAssemble(), AbstractContinuumMechanicsAssembler< DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX >::DoAssemble(), and AbstractCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >::Initialise().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

unsigned AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetUnsignedAttribute

(

)

This method converts the attribute (stored as a double) to an unsigned, and throws an exception if this is not sensible.

Returns

an unsigned attribute value.

Definition at line 181 of file AbstractElement.cpp.

References EXCEPTION, AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetAttribute(), and CompareDoubles::WithinAnyTolerance().

Referenced by AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >::AbstractCorrectionTermAssembler(), BidomainProblem< DIM >::AnalyseMeshForBath(), BidomainWithBathAssembler< ELEMENT_DIM, SPACE_DIM >::ComputeMatrixTerm(), ExtendedBidomainMassMatrixAssembler< DIM >::ComputeMatrixTerm(), BidomainMassMatrixAssembler< DIM >::ComputeMatrixTerm(), and PseudoEcgCalculator< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::ShouldSkipThisElement().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

bool AbstractElement< ELEMENT_DIM, SPACE_DIM >::IsDeleted

(

)

const

Get whether the element is marked as deleted.

Returns

mIsDeleted

Definition at line 135 of file AbstractElement.cpp.

References AbstractElement< ELEMENT_DIM, SPACE_DIM >::mIsDeleted.

Referenced by AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::ConstructFromMesh(), AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >::GetNextCableElement(), AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >::GetNextElement(), Cylindrical2dMesh::ReconstructCylindricalMesh(), and Cylindrical2dMesh::ReMesh().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

virtual void AbstractElement< ELEMENT_DIM, SPACE_DIM >::MarkAsDeleted ( )

pure virtual

Mark the element as having been removed from the mesh. Also notify nodes in the element that it has been removed.

Implemented in MutableElement< 1, SPACE_DIM >, MutableElement< ELEMENT_DIM, SPACE_DIM >, MutableElement< DIM, DIM >, BoundaryElement< ELEMENT_DIM, SPACE_DIM >, and Element< ELEMENT_DIM, SPACE_DIM >.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

virtual void AbstractElement< ELEMENT_DIM, SPACE_DIM >::RegisterWithNodes ( )

pure virtual

Inform all nodes forming this element that they are in this element.

Implemented in MutableElement< 1, SPACE_DIM >, MutableElement< ELEMENT_DIM, SPACE_DIM >, MutableElement< DIM, DIM >, BoundaryElement< ELEMENT_DIM, SPACE_DIM >, and Element< ELEMENT_DIM, SPACE_DIM >.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

void AbstractElement< ELEMENT_DIM, SPACE_DIM >::ReplaceNode	(	Node< SPACE_DIM > *	pOldNode,
		Node< SPACE_DIM > *	pNewNode
	)

Replace one of the nodes in this element with another.

Parameters

pOldNode	pointer to the current node
pNewNode	pointer to the replacement node

Definition at line 74 of file AbstractElement.cpp.

References EXCEPTION, AbstractElement< ELEMENT_DIM, SPACE_DIM >::mNodes, and AbstractElement< ELEMENT_DIM, SPACE_DIM >::UpdateNode().

Referenced by MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::PerformT2Swap(), Cylindrical2dMesh::ReconstructCylindricalMesh(), and MutableMesh< ELEMENT_DIM, SPACE_DIM >::SplitEdge().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

std::vector< double > & AbstractElement< ELEMENT_DIM, SPACE_DIM >::rGetElementAttributes

(

)

Returns

reference to a vector containing the element attributes.

Definition at line 211 of file AbstractElement.cpp.

References EXCEPTION, and AbstractElement< ELEMENT_DIM, SPACE_DIM >::mpElementAttributes.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

void AbstractElement< ELEMENT_DIM, SPACE_DIM >::SetAttribute

(

double

attribute

)

Set an attribute (a value associated with the element)

Parameters

attribute

the value of an attribute

Definition at line 165 of file AbstractElement.cpp.

References AbstractElement< ELEMENT_DIM, SPACE_DIM >::ConstructElementAttributes(), and AbstractElement< ELEMENT_DIM, SPACE_DIM >::mpElementAttributes.

Referenced by MixedDimensionMesh< ELEMENT_DIM, SPACE_DIM >::ConstructFromMeshReader(), DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::ConstructFromMeshReader(), Toroidal2dVertexMesh::ConstructFromMeshReader(), TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::ConstructFromMeshReader(), PottsMesh< DIM >::ConstructFromMeshReader(), and VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetNeighbouringElementIndices().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

void AbstractElement< ELEMENT_DIM, SPACE_DIM >::SetIndex

(

unsigned

index

)

Set the index of this element in the mesh.

Parameters

index

the new index

Definition at line 147 of file AbstractElement.cpp.

References AbstractElement< ELEMENT_DIM, SPACE_DIM >::mIndex.

Referenced by Toroidal2dVertexMesh::GetMeshForVtk(), and Cylindrical2dVertexMesh::GetMeshForVtk().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

void AbstractElement< ELEMENT_DIM, SPACE_DIM >::SetOwnership

(

bool

ownership

)

Set whether the current process owns this element.

Parameters

ownership

whether the current process now owns this element

Definition at line 159 of file AbstractElement.cpp.

References AbstractElement< ELEMENT_DIM, SPACE_DIM >::mOwnership.

Referenced by AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::SetElementOwnerships().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

virtual void AbstractElement< ELEMENT_DIM, SPACE_DIM >::UpdateNode ( const unsigned &  rIndex, Node< SPACE_DIM > *  pNode  )

pure virtual

Update node at the given index.

Parameters

rIndex	is an local index to which node to change
pNode	is a pointer to the replacement node

Implemented in MutableElement< 1, SPACE_DIM >, MutableElement< ELEMENT_DIM, SPACE_DIM >, MutableElement< DIM, DIM >, BoundaryElement< ELEMENT_DIM, SPACE_DIM >, and Element< ELEMENT_DIM, SPACE_DIM >.

Referenced by AbstractElement< ELEMENT_DIM, SPACE_DIM >::ReplaceNode().

Member Data Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

unsigned AbstractElement< ELEMENT_DIM, SPACE_DIM >::mIndex

protected

The index of this element within the mesh

Definition at line 63 of file AbstractElement.hpp.

Referenced by PottsElement< DIM >::AddNode(), MutableElement< ELEMENT_DIM, SPACE_DIM >::AddNode(), MutableElement< 1, SPACE_DIM >::AddNode(), AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >::CalculateJacobian(), MutableElement< ELEMENT_DIM, SPACE_DIM >::DeleteNode(), MutableElement< 1, SPACE_DIM >::DeleteNode(), Element< ELEMENT_DIM, SPACE_DIM >::Element(), AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetIndex(), Element< ELEMENT_DIM, SPACE_DIM >::MarkAsDeleted(), BoundaryElement< ELEMENT_DIM, SPACE_DIM >::MarkAsDeleted(), MutableElement< ELEMENT_DIM, SPACE_DIM >::MarkAsDeleted(), MutableElement< 1, SPACE_DIM >::MarkAsDeleted(), Element< ELEMENT_DIM, SPACE_DIM >::RegisterWithNodes(), BoundaryElement< ELEMENT_DIM, SPACE_DIM >::RegisterWithNodes(), MutableElement< ELEMENT_DIM, SPACE_DIM >::RegisterWithNodes(), MutableElement< 1, SPACE_DIM >::RegisterWithNodes(), BoundaryElement< ELEMENT_DIM, SPACE_DIM >::ResetIndex(), Element< ELEMENT_DIM, SPACE_DIM >::ResetIndex(), MutableElement< ELEMENT_DIM, SPACE_DIM >::ResetIndex(), MutableElement< 1, SPACE_DIM >::ResetIndex(), AbstractElement< ELEMENT_DIM, SPACE_DIM >::SetIndex(), Element< ELEMENT_DIM, SPACE_DIM >::UpdateNode(), BoundaryElement< ELEMENT_DIM, SPACE_DIM >::UpdateNode(), MutableElement< ELEMENT_DIM, SPACE_DIM >::UpdateNode(), and MutableElement< 1, SPACE_DIM >::UpdateNode().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

bool AbstractElement< ELEMENT_DIM, SPACE_DIM >::mIsDeleted

protected

Whether this element has been deleted, and hence whether its location in the mesh can be re-used.

Definition at line 69 of file AbstractElement.hpp.

Referenced by AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >::GetVolume(), AbstractElement< ELEMENT_DIM, SPACE_DIM >::IsDeleted(), Element< ELEMENT_DIM, SPACE_DIM >::MarkAsDeleted(), BoundaryElement< ELEMENT_DIM, SPACE_DIM >::MarkAsDeleted(), MutableElement< ELEMENT_DIM, SPACE_DIM >::MarkAsDeleted(), and MutableElement< 1, SPACE_DIM >::MarkAsDeleted().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

std::vector<Node<SPACE_DIM>*> AbstractElement< ELEMENT_DIM, SPACE_DIM >::mNodes

protected

The nodes forming this element.

Definition at line 60 of file AbstractElement.hpp.

Referenced by AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >::AbstractTetrahedralElement(), AbstractTetrahedralElement< 0, SPACE_DIM >::AbstractTetrahedralElement(), PottsElement< DIM >::AddNode(), MutableElement< ELEMENT_DIM, SPACE_DIM >::AddNode(), AbstractElement< ELEMENT_DIM, SPACE_DIM >::AddNode(), MutableElement< 1, SPACE_DIM >::AddNode(), BoundaryElement< ELEMENT_DIM, SPACE_DIM >::BoundaryElement(), AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >::CalculateCentroid(), AbstractTetrahedralElement< 0, SPACE_DIM >::CalculateCentroid(), MutableElement< ELEMENT_DIM, SPACE_DIM >::DeleteNode(), MutableElement< 1, SPACE_DIM >::DeleteNode(), PottsElement< DIM >::GetAspectRatio(), AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetNode(), AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetNodeGlobalIndex(), MutableElement< ELEMENT_DIM, SPACE_DIM >::GetNodeLocalIndex(), MutableElement< 1, SPACE_DIM >::GetNodeLocalIndex(), AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetNodeLocation(), AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetNumNodes(), MutableElement< ELEMENT_DIM, SPACE_DIM >::IsElementOnBoundary(), MutableElement< 1, SPACE_DIM >::IsElementOnBoundary(), Element< ELEMENT_DIM, SPACE_DIM >::MarkAsDeleted(), BoundaryElement< ELEMENT_DIM, SPACE_DIM >::MarkAsDeleted(), MutableElement< ELEMENT_DIM, SPACE_DIM >::MarkAsDeleted(), MutableElement< 1, SPACE_DIM >::MarkAsDeleted(), MutableElement< 1, SPACE_DIM >::MutableElement(), Element< ELEMENT_DIM, SPACE_DIM >::RegisterWithNodes(), BoundaryElement< ELEMENT_DIM, SPACE_DIM >::RegisterWithNodes(), MutableElement< ELEMENT_DIM, SPACE_DIM >::RegisterWithNodes(), MutableElement< 1, SPACE_DIM >::RegisterWithNodes(), AbstractElement< ELEMENT_DIM, SPACE_DIM >::ReplaceNode(), BoundaryElement< ELEMENT_DIM, SPACE_DIM >::ResetIndex(), Element< ELEMENT_DIM, SPACE_DIM >::ResetIndex(), MutableElement< ELEMENT_DIM, SPACE_DIM >::ResetIndex(), MutableElement< 1, SPACE_DIM >::ResetIndex(), Element< ELEMENT_DIM, SPACE_DIM >::UpdateNode(), BoundaryElement< ELEMENT_DIM, SPACE_DIM >::UpdateNode(), MutableElement< ELEMENT_DIM, SPACE_DIM >::UpdateNode(), MutableElement< 1, SPACE_DIM >::UpdateNode(), and VertexElement< ELEMENT_DIM, SPACE_DIM >::VertexElement().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

bool AbstractElement< ELEMENT_DIM, SPACE_DIM >::mOwnership

protected

Whether the current process owns this element.

Definition at line 72 of file AbstractElement.hpp.

Referenced by AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetOwnership(), and AbstractElement< ELEMENT_DIM, SPACE_DIM >::SetOwnership().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

ElementAttributes<ELEMENT_DIM, SPACE_DIM>* AbstractElement< ELEMENT_DIM, SPACE_DIM >::mpElementAttributes

protected

A pointer to an ElementAttributes object associated with this element.

Definition at line 75 of file AbstractElement.hpp.

Referenced by AbstractElement< ELEMENT_DIM, SPACE_DIM >::AddElementAttribute(), AbstractElement< ELEMENT_DIM, SPACE_DIM >::ConstructElementAttributes(), AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetAttribute(), AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetNumElementAttributes(), AbstractElement< ELEMENT_DIM, SPACE_DIM >::rGetElementAttributes(), AbstractElement< ELEMENT_DIM, SPACE_DIM >::SetAttribute(), and AbstractElement< ELEMENT_DIM, SPACE_DIM >::~AbstractElement().

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The documentation for this class was generated from the following files:

• mesh/src/common/AbstractElement.hpp
• mesh/src/common/AbstractElement.cpp