#include <AbstractOdeSystemWithAnalyticJacobian.hpp>

Inheritance diagram for AbstractOdeSystemWithAnalyticJacobian:

Collaboration diagram for AbstractOdeSystemWithAnalyticJacobian:

Public Member Functions
	AbstractOdeSystemWithAnalyticJacobian (unsigned numberOfStateVariables=0)

virtual void	AnalyticJacobian (const std::vector< double > &rSolutionGuess, double **jacobian, double time, double timeStep)=0

Public Member Functions inherited from AbstractOdeSystem
	AbstractOdeSystem (unsigned numberOfStateVariables)

virtual	~AbstractOdeSystem ()

virtual void	EvaluateYDerivatives (double time, const std::vector< double > &rY, std::vector< double > &rDY)=0

virtual bool	CalculateStoppingEvent (double time, const std::vector< double > &rY)

virtual double	CalculateRootFunction (double time, const std::vector< double > &rY)

bool	GetUseAnalyticJacobian ()

const std::vector< double > &	rGetConstStateVariables () const

Public Member Functions inherited from AbstractParameterisedSystem< std::vector< double > >
	AbstractParameterisedSystem (unsigned numberOfStateVariables)

std::vector< double > &	rGetStateVariables ()

std::vector< double >	GetStateVariables ()

void	SetStateVariables (const std::vector< double > &rStateVariables)

double	GetStateVariable (unsigned index) const

double	GetStateVariable (const std::string &rName) const

void	SetStateVariable (unsigned index, double newValue)

void	SetStateVariable (const std::string &rName, double newValue)

virtual void	VerifyStateVariables ()

void	SetDefaultInitialConditions (const std::vector< double > &rInitialConditions)

void	SetDefaultInitialCondition (unsigned index, double initialCondition)

std::vector< double >	GetInitialConditions () const

void	ResetToInitialConditions ()

double	GetParameter (unsigned index) const

double	GetParameter (const std::string &rName) const

void	SetParameter (const std::string &rName, double value)

void	SetParameter (unsigned index, double value)

double	GetAnyVariable (unsigned index, double time=0.0, std::vector< double > *pDerivedQuantities=NULL)

double	GetAnyVariable (const std::string &rName, double time=0.0, std::vector< double > *pDerivedQuantities=NULL)

void	SetAnyVariable (unsigned index, double value)

void	SetAnyVariable (const std::string &rName, double value)

virtual std::vector< double >	ComputeDerivedQuantities (double time, const std::vector< double > &rState)

std::vector< double >	ComputeDerivedQuantitiesFromCurrentState (double time)

Public Member Functions inherited from AbstractUntemplatedParameterisedSystem
	AbstractUntemplatedParameterisedSystem (unsigned numberOfStateVariables)

virtual	~AbstractUntemplatedParameterisedSystem ()

boost::shared_ptr< const AbstractOdeSystemInformation >	GetSystemInformation () const

std::string	GetSystemName () const

unsigned	GetNumberOfAttributes () const

bool	HasAttribute (const std::string &rName) const

double	GetAttribute (const std::string &rName) const

unsigned	GetNumberOfStateVariables () const

const std::vector< std::string > &	rGetStateVariableNames () const

const std::vector< std::string > &	rGetStateVariableUnits () const

unsigned	GetStateVariableIndex (const std::string &rName) const

bool	HasStateVariable (const std::string &rName) const

std::string	GetStateVariableUnits (unsigned index) const

unsigned	GetNumberOfParameters () const

const std::vector< std::string > &	rGetParameterNames () const

const std::vector< std::string > &	rGetParameterUnits () const

unsigned	GetParameterIndex (const std::string &rName) const

bool	HasParameter (const std::string &rName) const

std::string	GetParameterUnits (unsigned index) const

unsigned	GetNumberOfDerivedQuantities () const

const std::vector< std::string > &	rGetDerivedQuantityNames () const

const std::vector< std::string > &	rGetDerivedQuantityUnits () const

unsigned	GetDerivedQuantityIndex (const std::string &rName) const

bool	HasDerivedQuantity (const std::string &rName) const

std::string	GetDerivedQuantityUnits (unsigned index) const

unsigned	GetAnyVariableIndex (const std::string &rName) const

bool	HasAnyVariable (const std::string &rName) const

std::string	GetAnyVariableUnits (unsigned index) const

std::string	GetAnyVariableUnits (const std::string &rName) const

Additional Inherited Members
Protected Member Functions inherited from AbstractParameterisedSystem< std::vector< double > >
std::string	DumpState (const std::string &rMessage)

std::string	DumpState (const std::string &rMessage, std::vector< double >Y)

std::string	DumpState (const std::string &rMessage, std::vector< double >Y, double time)

void	CheckParametersOnLoad (const std::vector< double > &rParameters, const std::vector< std::string > &rParameterNames)

Protected Attributes inherited from AbstractOdeSystem
bool	mUseAnalyticJacobian

Protected Attributes inherited from AbstractParameterisedSystem< std::vector< double > >
std::vector< double >	mStateVariables

std::vector< double >	mParameters

Protected Attributes inherited from AbstractUntemplatedParameterisedSystem
unsigned	mNumberOfStateVariables

boost::shared_ptr< AbstractOdeSystemInformation >	mpSystemInfo

Detailed Description

Abstract analytic Jacobian class.

Represents an ODE system with an analytic Jacobian available, which can be computed using the method AnalyticJacobian.

Definition at line 49 of file AbstractOdeSystemWithAnalyticJacobian.hpp.

Constructor & Destructor Documentation

AbstractOdeSystemWithAnalyticJacobian::AbstractOdeSystemWithAnalyticJacobian ( unsigned numberOfStateVariables = 0 )

inline

Constructor.

Parameters

numberOfStateVariables the number of state variables in the ODE system (defaults to 0)

Definition at line 58 of file AbstractOdeSystemWithAnalyticJacobian.hpp.

References AnalyticJacobian(), and AbstractOdeSystem::mUseAnalyticJacobian.

Member Function Documentation

virtual void AbstractOdeSystemWithAnalyticJacobian::AnalyticJacobian	(	const std::vector< double > &	rSolutionGuess,
		double **	jacobian,
		double	time,
		double	timeStep
	)

pure virtual

Compute the analytic Jacobian matrix of the ODE system.

Parameters

rSolutionGuess	the current guess at the solution for this time step
jacobian	will be filled in with the Jacobian matrix entries
time	the current simulation time
timeStep	the time step in use by the integrator at present

Implemented in TysonNovak2001OdeSystem.

Referenced by AbstractOdeSystemWithAnalyticJacobian(), and BackwardEulerIvpOdeSolver::ComputeJacobian().

The documentation for this class was generated from the following file:

ode/src/common/AbstractOdeSystemWithAnalyticJacobian.hpp

Public Member Functions

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

Member Function Documentation