CellVecData Class Reference

#include <CellVecData.hpp>

Inheritance diagram for CellVecData:

Collaboration diagram for CellVecData:

Public Member Functions
	CellVecData ()
	CellVecData (const CellVecData &rAnotherCellVecData)
	CellVecData (const std::map< std::string, Vec > &rCellVecDataMap)
virtual	~CellVecData ()
void	SetItem (const std::string &rVariableName, Vec data)
Vec	GetItem (const std::string &rVariableName) const
unsigned	GetNumItems () const
std::vector< std::string >	GetKeys () const
Public Member Functions inherited from AbstractCellProperty
	AbstractCellProperty ()
virtual	~AbstractCellProperty ()
template<class CLASS >
bool	IsType () const
template<class BASECLASS >
bool	IsSubType () const
bool	IsSame (const AbstractCellProperty *pOther) const
bool	IsSame (boost::shared_ptr< const AbstractCellProperty > pOther) const
void	IncrementCellCount ()
void	DecrementCellCount ()
unsigned	GetCellCount () const
Public Member Functions inherited from Identifiable
virtual	~Identifiable ()
std::string	GetIdentifier () const

Private Member Functions
template<class Archive >
void	serialize (Archive &archive, const unsigned int version)

Private Attributes
std::map< std::string, Vec >	mCellVecData
bool	mFreeVecs

Friends
class	boost::serialization::access

Detailed Description

CellVecData class.

This cell property allows each cell to store one or more 'named' PETSc Vec variables associated with it, for example solutions to reaction-diffusion PDEs solved within the cell. Other classes may interrogate or modify the values stored in this class.

Definition at line 62 of file CellVecData.hpp.

Constructor & Destructor Documentation

CellVecData::CellVecData

(

)

Default constructor

Definition at line 38 of file CellVecData.cpp.

Referenced by serialize().

CellVecData::CellVecData

(

const CellVecData &

rAnotherCellVecData

)

Copy constructor used to perform a deep copy of rAnotherCellVecData

Parameters

rAnotherCellVecData

the class to copy

Definition at line 43 of file CellVecData.cpp.

References GetItem(), GetKeys(), and mCellVecData.

CellVecData::CellVecData

(

const std::map< std::string, Vec > &

rCellVecDataMap

)

Constructor required for serialisation. Avoid using otherwise.

Parameters

rCellVecDataMap

the internal map which needs to be copied

Definition at line 61 of file CellVecData.cpp.

CellVecData::~CellVecData ( )

virtual

We need the empty virtual destructor in this class to ensure Boost serialization works correctly with static libraries.

Definition at line 67 of file CellVecData.cpp.

References PetscTools::Destroy(), mCellVecData, and mFreeVecs.

Referenced by serialize().

Member Function Documentation

Vec CellVecData::GetItem

(

const std::string &

rVariableName

)

const

Returns

data.

Parameters

rVariableName

the index of the data required. throws if rVariableName has not been stored

Definition at line 84 of file CellVecData.cpp.

References EXCEPTION, and mCellVecData.

Referenced by CellVecData(), and serialize().

std::vector< std::string > CellVecData::GetKeys

(

)

const

Returns

all keys.

According to STL these are sorted in lexicographical/alphabetic order (so that the ordering here is predictable).

Definition at line 105 of file CellVecData.cpp.

References CHASTE_CLASS_EXPORT, and mCellVecData.

Referenced by CellVecData(), and serialize().

unsigned CellVecData::GetNumItems

(

)

const

Returns

number of data items

Definition at line 100 of file CellVecData.cpp.

References mCellVecData.

Referenced by serialize().

template<class Archive >

void CellVecData::serialize ( Archive &  archive, const unsigned int  version  )

inlineprivate

Archive the member variables.

Parameters

archive	the archive
version	the current version of this class

Definition at line 85 of file CellVecData.hpp.

References CellVecData(), CHASTE_CLASS_EXPORT, PetscTools::CreateVec(), GetItem(), GetKeys(), GetNumItems(), SetItem(), and ~CellVecData().

void CellVecData::SetItem	(	const std::string &	rVariableName,
		Vec	data
	)

This assigns the cell data.

Parameters

rVariableName	the name of the data to be set.
data	the value to set it to.

Definition at line 79 of file CellVecData.cpp.

References mCellVecData.

Referenced by serialize().

Friends And Related Function Documentation

friend class boost::serialization::access

friend

Needed for serialization.

Definition at line 77 of file CellVecData.hpp.

Member Data Documentation

std::map<std::string, Vec> CellVecData::mCellVecData

private

The cell data.

Definition at line 69 of file CellVecData.hpp.

Referenced by CellVecData(), GetItem(), GetKeys(), GetNumItems(), SetItem(), and ~CellVecData().

bool CellVecData::mFreeVecs

private

Whether to free in the destructor the Vec stored in the map

Definition at line 74 of file CellVecData.hpp.

Referenced by ~CellVecData().

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The documentation for this class was generated from the following files:

• cell_based/src/cell/properties/CellVecData.hpp
• cell_based/src/cell/properties/CellVecData.cpp