#include <CellwiseOdeSystemInformation.hpp>

Inheritance diagram for CellwiseOdeSystemInformation< ODE_SYSTEM >:

Collaboration diagram for CellwiseOdeSystemInformation< ODE_SYSTEM >:

Public Member Functions
	CellwiseOdeSystemInformation ()

Public Member Functions inherited from AbstractOdeSystemInformation
	AbstractOdeSystemInformation ()

virtual	~AbstractOdeSystemInformation ()

std::string	GetSystemName () const

std::string	GetFreeVariableName () const

std::string	GetFreeVariableUnits () const

void	SetDefaultInitialConditions (const std::vector< double > &rInitialConditions)

void	SetDefaultInitialCondition (unsigned index, double initialCondition)

std::vector< double >	GetInitialConditions () const

const std::vector< std::string > &	rGetStateVariableNames () const

const std::vector< std::string > &	rGetStateVariableUnits () const

unsigned	GetStateVariableIndex (const std::string &rName) const

bool	HasStateVariable (const std::string &rName) const

std::string	GetStateVariableUnits (unsigned index) const

const std::vector< std::string > &	rGetParameterNames () const

const std::vector< std::string > &	rGetParameterUnits () const

unsigned	GetParameterIndex (const std::string &rName) const

bool	HasParameter (const std::string &rName) const

std::string	GetParameterUnits (unsigned index) const

unsigned	GetNumberOfParameters () const

unsigned	GetAnyVariableIndex (const std::string &rName) const

bool	HasAnyVariable (const std::string &rName) const

std::string	GetAnyVariableUnits (unsigned index) const

const std::vector< std::string > &	rGetDerivedQuantityNames () const

const std::vector< std::string > &	rGetDerivedQuantityUnits () const

unsigned	GetDerivedQuantityIndex (const std::string &rName) const

bool	HasDerivedQuantity (const std::string &rName) const

std::string	GetDerivedQuantityUnits (unsigned index) const

unsigned	GetNumberOfDerivedQuantities () const

unsigned	GetNumberOfAttributes () const

bool	HasAttribute (const std::string &rName) const

double	GetAttribute (const std::string &rName) const

Protected Member Functions
void	Initialise ()

template<>
void	Initialise ()

template<>
void	Initialise ()

template<>
void	Initialise ()

template<>
void	Initialise ()

template<>
void	Initialise ()

template<>
void	Initialise ()

Additional Inherited Members
Protected Attributes inherited from AbstractOdeSystemInformation
std::string	mSystemName

std::string	mFreeVariableName

std::string	mFreeVariableUnits

std::vector< std::string >	mVariableNames

std::vector< std::string >	mVariableUnits

std::vector< std::string >	mParameterNames

std::vector< std::string >	mParameterUnits

std::vector< std::string >	mDerivedQuantityNames

std::vector< std::string >	mDerivedQuantityUnits

std::map< std::string, double >	mAttributes

std::vector< double >	mInitialConditions

bool	mInitialised

Detailed Description

template<class ODE_SYSTEM>
class CellwiseOdeSystemInformation< ODE_SYSTEM >

Concrete implementation of AbstractOdeSystemInformation designed for use where some of the system information *can* vary across instances. As with OdeSystemInformation it is templated by ODE system class, to aid developers of ODE system classes - only a specialisation of the Initialise method is required.

Note: unexpected behaviour can occur if ODE system objects are copied (via copy constructor or operator=). The AbstractOdeSystem maintains a smart pointer (boost::shared_ptr) to the system information object. Hence both the original and the copy will share the same information object.

Definition at line 53 of file CellwiseOdeSystemInformation.hpp.

Constructor & Destructor Documentation

template<class ODE_SYSTEM >

CellwiseOdeSystemInformation< ODE_SYSTEM >::CellwiseOdeSystemInformation ( )

Default constructor; calls Initialise.

Designed to be used as follows by ODE system classes in their constructors: mpSystemInfo.reset(new CellwiseOdeSystemInformation<CLASS>);

Definition at line 86 of file CellwiseOdeSystemInformation.hpp.

References CellwiseOdeSystemInformation< ODE_SYSTEM >::Initialise().

Member Function Documentation

template<>

void CellwiseOdeSystemInformation< DeltaNotchOdeSystem >::Initialise ( )

protectedvirtual

Initialise the ODE system information.

This must be provided by subclasses.

Implements AbstractOdeSystemInformation.

Definition at line 81 of file DeltaNotchOdeSystem.cpp.

References CHASTE_CLASS_EXPORT.

template<class ODE_SYSTEM >

void CellwiseOdeSystemInformation< ODE_SYSTEM >::Initialise ( void )

protectedvirtual

Generic implementation of Initialise, which does nothing.

Developers should specialise this method to their ODE system. For example,

template<> void CellwiseOdeSystemInformation<MyNewOdeSystem>::Initialise() { this->mVariableNames.push_back("Variable_1"); this->mVariableUnits.push_back("Units_1"); this->mInitialConditions.push_back(0.0);

this->mInitialised = true; }

Implements AbstractOdeSystemInformation.

Definition at line 92 of file CellwiseOdeSystemInformation.hpp.

Referenced by CellwiseOdeSystemInformation< ODE_SYSTEM >::CellwiseOdeSystemInformation().

template<>

void CellwiseOdeSystemInformation< Goldbeter1991OdeSystem >::Initialise ( )

protectedvirtual

Initialise the ODE system information.

This must be provided by subclasses.

Implements AbstractOdeSystemInformation.

Definition at line 97 of file Goldbeter1991OdeSystem.cpp.

References CHASTE_CLASS_EXPORT.