#include <HeartGeometryInformation.hpp>

Inheritance diagram for HeartGeometryInformation< SPACE_DIM >:

Collaboration diagram for HeartGeometryInformation< SPACE_DIM >:

Public Member Functions
	HeartGeometryInformation (AbstractTetrahedralMesh< SPACE_DIM, SPACE_DIM > &rMesh, const std::string &rEpiFile, const std::string &rEndoFile, bool indexFromZero)

	HeartGeometryInformation (AbstractTetrahedralMesh< SPACE_DIM, SPACE_DIM > &rMesh, const std::string &rEpiFile, const std::string &rLVFile, const std::string &rRVFile, bool indexFromZero)

	HeartGeometryInformation (std::string nodeHeterogeneityFileName)

HeartRegionType	GetHeartRegion (unsigned nodeIndex) const

std::vector< double > &	rGetDistanceMapEpicardium ()

std::vector< double > &	rGetDistanceMapEndocardium ()

std::vector< double > &	rGetDistanceMapRightVentricle ()

std::vector< double > &	rGetDistanceMapLeftVentricle ()

const std::vector< unsigned > &	rGetNodesOnEpiSurface ()

const std::vector< unsigned > &	rGetNodesOnEndoSurface ()

const std::vector< unsigned > &	rGetNodesOnLVSurface ()

const std::vector< unsigned > &	rGetNodesOnRVSurface ()

const std::vector< HeartLayerType > &	rGetLayerForEachNode ()

double	CalculateRelativeWallPosition (unsigned nodeIndex)

void	DetermineLayerForEachNode (double epiFraction, double endoFraction)

void	WriteLayerForEachNode (std::string outputDir, std::string file)

ChasteCuboid< SPACE_DIM >	CalculateBoundingBoxOfEpi ()

ChasteCuboid< SPACE_DIM >	CalculateBoundingBoxOfEndo ()

ChasteCuboid< SPACE_DIM >	CalculateBoundingBoxOfLV ()

ChasteCuboid< SPACE_DIM >	CalculateBoundingBoxOfRV ()

Static Public Attributes
static const HeartRegionType	LEFT_VENTRICLE_WALL =1001

static const HeartRegionType	RIGHT_VENTRICLE_WALL =1002

static const HeartRegionType	LEFT_SEPTUM =1003

static const HeartRegionType	RIGHT_SEPTUM =1004

static const HeartRegionType	LEFT_VENTRICLE_SURFACE =1005

static const HeartRegionType	RIGHT_VENTRICLE_SURFACE =1006

static const HeartRegionType	UNKNOWN =1007

Private Member Functions
void	GetNodesAtSurface (const std::string &rSurfaceFileName, std::vector< unsigned > &rSurfaceNodes, bool indexFromZero=true) const

void	ProcessLine (const std::string &rLineFromFile, std::set< unsigned > &rSurfaceNodeIndexSet, unsigned offset) const

double	GetDistanceToEndo (unsigned nodeIndex)

double	GetDistanceToEpi (unsigned nodeIndex)

ChasteCuboid< SPACE_DIM >	CalculateBoundingBoxOfSurface (const std::vector< unsigned > &rSurfaceNodes)

Private Attributes
std::vector< unsigned >	mEpiSurface

std::vector< unsigned >	mEndoSurface

std::vector< unsigned >	mLVSurface

std::vector< unsigned >	mRVSurface

AbstractTetrahedralMesh< SPACE_DIM, SPACE_DIM > *	mpMesh

std::vector< double >	mDistMapEpicardium

std::vector< double >	mDistMapEndocardium

std::vector< double >	mDistMapRightVentricle

std::vector< double >	mDistMapLeftVentricle

unsigned	mNumberOfSurfacesProvided

std::vector< HeartLayerType >	mLayerForEachNode

Static Private Attributes
static const double	LEFT_SEPTUM_SIZE = 2.0/3.0

static const double	RIGHT_SEPTUM_SIZE = 1.0/3.0

Detailed Description

template<unsigned SPACE_DIM>
class HeartGeometryInformation< SPACE_DIM >

This class provides a method to calculate the relative position of a node with respect to two (or three) given surfaces.

Definition at line 62 of file HeartGeometryInformation.hpp.

Constructor & Destructor Documentation

template<unsigned SPACE_DIM>

HeartGeometryInformation< SPACE_DIM >::HeartGeometryInformation	(	AbstractTetrahedralMesh< SPACE_DIM, SPACE_DIM > &	rMesh,
		const std::string &	rEpiFile,
		const std::string &	rEndoFile,
		bool	indexFromZero
	)

Constructor for a two surface mesh. File formats: list of nodes, either one per line or multiple (e.g. nodes in each boundary element on surface).

Parameters

rMesh	reference to the mesh
rEpiFile	a file containing a list of global node indices on the epicardial surface
rEndoFile	a file containing a list of global node indices on the endocardial surface
indexFromZero	true for native triangles files. false for Memfem files which are indexed from 1.

Definition at line 53 of file HeartGeometryInformation.cpp.

References DistanceMapCalculator< ELEMENT_DIM, SPACE_DIM >::ComputeDistanceMap(), HeartGeometryInformation< SPACE_DIM >::GetNodesAtSurface(), HeartGeometryInformation< SPACE_DIM >::mDistMapEndocardium, HeartGeometryInformation< SPACE_DIM >::mDistMapEpicardium, HeartGeometryInformation< SPACE_DIM >::mEndoSurface, HeartGeometryInformation< SPACE_DIM >::mEpiSurface, HeartGeometryInformation< SPACE_DIM >::mNumberOfSurfacesProvided, and HeartGeometryInformation< SPACE_DIM >::mpMesh.

template<unsigned SPACE_DIM>

HeartGeometryInformation< SPACE_DIM >::HeartGeometryInformation	(	AbstractTetrahedralMesh< SPACE_DIM, SPACE_DIM > &	rMesh,
		const std::string &	rEpiFile,
		const std::string &	rLVFile,
		const std::string &	rRVFile,
		bool	indexFromZero
	)

Constructor for a three surface mesh. File formats: list of nodes, either one per line or multiple (e.g. nodes in each boundary element on surface).

Parameters

rMesh	reference to the mesh
rEpiFile	a file containing a list of global node indices on the epicardial surface
rRVFile	a file containing a list of global node indices on the endocardial right ventricular surface (can be empty string)
rLVFile	a file containing a list of global node indices on the endocardial left ventricular surface (can be empty string)
indexFromZero	true for native triangles files. false for Memfem files which are indexed from 1.

If either rRVFile or rLVfile are the empty string, then it is assumed that this is a wedge preparation for left or right ventricle, respectively. That is, the ventricle with a non-empty string. If both are empty strings then throws exception.

Definition at line 72 of file HeartGeometryInformation.cpp.

template<unsigned SPACE_DIM>

HeartGeometryInformation< SPACE_DIM >::HeartGeometryInformation ( std::string nodeHeterogeneityFileName )

Alternative constructor that takes in the file containing a list of numbers (as many as the number of nodes). Each number specifies the layer for the corresponding node.

This constructor should be called if the heterogeneities have /already/ been computed by an instance of this class and written to file by the WriteLayerForEachNode() method.

Parameters

nodeHeterogeneityFileName the file name.

Definition at line 108 of file HeartGeometryInformation.cpp.

References EXCEPTION, HeartGeometryInformation< SPACE_DIM >::mLayerForEachNode, and HeartGeometryInformation< SPACE_DIM >::mpMesh.

Member Function Documentation

template<unsigned SPACE_DIM>

ChasteCuboid<SPACE_DIM> HeartGeometryInformation< SPACE_DIM >::CalculateBoundingBoxOfEndo ( )

inline

Returns: bounding box Uses CalculateBoundingBoxOfSurface to calculate an axis-aligned bounding box of the nodes in the input endocardial surface

Definition at line 341 of file HeartGeometryInformation.hpp.

template<unsigned SPACE_DIM>

ChasteCuboid<SPACE_DIM> HeartGeometryInformation< SPACE_DIM >::CalculateBoundingBoxOfEpi ( )

inline

Returns: bounding box Uses CalculateBoundingBoxOfSurface to calculate an axis-aligned bounding box of the nodes in the input epicardial surface

Definition at line 330 of file HeartGeometryInformation.hpp.

template<unsigned SPACE_DIM>

ChasteCuboid<SPACE_DIM> HeartGeometryInformation< SPACE_DIM >::CalculateBoundingBoxOfLV ( )

inline

Returns: bounding box Uses CalculateBoundingBoxOfSurface to calculate an axis-aligned bounding box of the nodes in the input endocardial left ventricular surface

Definition at line 352 of file HeartGeometryInformation.hpp.

template<unsigned SPACE_DIM>

ChasteCuboid<SPACE_DIM> HeartGeometryInformation< SPACE_DIM >::CalculateBoundingBoxOfRV ( )

inline

Returns: bounding box Uses CalculateBoundingBoxOfSurface to calculate an axis-aligned bounding box of the nodes in the input endocardial left ventricular surface

Definition at line 363 of file HeartGeometryInformation.hpp.

template<unsigned SPACE_DIM>

ChasteCuboid< SPACE_DIM > HeartGeometryInformation< SPACE_DIM >::CalculateBoundingBoxOfSurface ( const std::vector< unsigned > & rSurfaceNodes )

private

Returns: a bounding box for a group of node indices (such as the epi-surface)

Parameters

rSurfaceNodes The indices of the nodes which represent this surface

Definition at line 408 of file HeartGeometryInformation.cpp.

References AbstractMesh< ELEMENT_DIM, SPACE_DIM >::GetDistributedVectorFactory(), AbstractMesh< ELEMENT_DIM, SPACE_DIM >::GetNode(), DistributedVectorFactory::IsGlobalIndexLocal(), and HeartGeometryInformation< SPACE_DIM >::mpMesh.

Referenced by HeartGeometryInformation< ELEMENT_DIM >::CalculateBoundingBoxOfEndo(), HeartGeometryInformation< ELEMENT_DIM >::CalculateBoundingBoxOfEpi(), HeartGeometryInformation< ELEMENT_DIM >::CalculateBoundingBoxOfLV(), and HeartGeometryInformation< ELEMENT_DIM >::CalculateBoundingBoxOfRV().

template<unsigned SPACE_DIM>

double HeartGeometryInformation< SPACE_DIM >::CalculateRelativeWallPosition ( unsigned nodeIndex )

Returns: the relative position within the wall thickness (normalised to [0,1])

Parameters

nodeIndex index is the index of the node in the mesh

Returns: the relative position

Definition at line 331 of file HeartGeometryInformation.cpp.

References HeartGeometryInformation< SPACE_DIM >::GetDistanceToEndo(), and HeartGeometryInformation< SPACE_DIM >::GetDistanceToEpi().

Referenced by HeartGeometryInformation< SPACE_DIM >::DetermineLayerForEachNode(), and HeartGeometryInformation< ELEMENT_DIM >::rGetLayerForEachNode().

template<unsigned SPACE_DIM>

void HeartGeometryInformation< SPACE_DIM >::DetermineLayerForEachNode	(	double	epiFraction,
		double	endoFraction
	)

Compute which layer (endocardial, midmyocardial or epicardial) each node is in

Parameters

epiFraction	is the fraction of wall designed to be epicardial layer
endoFraction	is the fraction of wall designed to be endocardial layer

Definition at line 346 of file HeartGeometryInformation.cpp.

References HeartGeometryInformation< SPACE_DIM >::CalculateRelativeWallPosition(), EXCEPTION, AbstractMesh< ELEMENT_DIM, SPACE_DIM >::GetNumNodes(), HeartGeometryInformation< SPACE_DIM >::mLayerForEachNode, and HeartGeometryInformation< SPACE_DIM >::mpMesh.

Referenced by HeartConfigRelatedCellFactory< SPACE_DIM >::FillInCellularTransmuralAreas(), and HeartGeometryInformation< ELEMENT_DIM >::rGetLayerForEachNode().

template<unsigned SPACE_DIM>

double HeartGeometryInformation< SPACE_DIM >::GetDistanceToEndo ( unsigned nodeIndex )

private

Helper method to calculate the distance between the node and the Endocardial surface as defined to be the closest surface to the node out of left ventricle and right ventricle.

Parameters

nodeIndex is the index of the node in the mesh

Returns: the distance

Definition at line 270 of file HeartGeometryInformation.cpp.

Referenced by HeartGeometryInformation< SPACE_DIM >::CalculateRelativeWallPosition().

template<unsigned SPACE_DIM>

double HeartGeometryInformation< SPACE_DIM >::GetDistanceToEpi ( unsigned nodeIndex )

private

Helper method to calculate the distance between the node and the Epicardial surface

Parameters

nodeIndex is the index of the node in the mesh

Returns: the distance

Definition at line 325 of file HeartGeometryInformation.cpp.

References HeartGeometryInformation< SPACE_DIM >::mDistMapEpicardium.

Referenced by HeartGeometryInformation< SPACE_DIM >::CalculateRelativeWallPosition().

template<unsigned SPACE_DIM>

HeartRegionType HeartGeometryInformation< SPACE_DIM >::GetHeartRegion ( unsigned nodeIndex ) const

Parameters

nodeIndex index is the index of the node in the mesh

Returns: the region type based on the relative distances to epi and endocardial surfaces

Definition at line 236 of file HeartGeometryInformation.cpp.

Referenced by HeartGeometryInformation< SPACE_DIM >::GetDistanceToEndo().

template<unsigned SPACE_DIM>

void HeartGeometryInformation< SPACE_DIM >::GetNodesAtSurface	(	const std::string &	rSurfaceFileName,
		std::vector< unsigned > &	rSurfaceNodes,
		bool	indexFromZero = `true`
	)		const

private

Takes in a file of all the nodes on ONE PARTICULAR surface of the mesh (eg the right ventricular endo-cardial surface) and collects all the nodes on that surface in one vector.

Parameters

rSurfaceFileName	The surface file, lists global node indices on this surface. The number of lines in this file and entries per line doesn't matter. Just have to be separated by whitespace and returns. But these files would tend to be: EITHER: multiple entries on one line – all nodes in each boundary element, OR: simply a list of the nodes on the surface.
rSurfaceNodes	The returned vector of nodes indices on this surface
indexFromZero	True for native triangles files. False for Memfem files which are indexed from 1.

Definition at line 176 of file HeartGeometryInformation.cpp.

References EXCEPTION, HeartGeometryInformation< SPACE_DIM >::mpMesh, HeartGeometryInformation< SPACE_DIM >::ProcessLine(), and AbstractMesh< ELEMENT_DIM, SPACE_DIM >::rGetNodePermutation().

Referenced by HeartGeometryInformation< SPACE_DIM >::HeartGeometryInformation().

template<unsigned SPACE_DIM>

void HeartGeometryInformation< SPACE_DIM >::ProcessLine	(	const std::string &	rLineFromFile,
		std::set< unsigned > &	rSurfaceNodeIndexSet,
		unsigned	offset
	)		const

private

Helper function for GetNodesAtSurface

Parameters

rLineFromFile	A line in a surface file.
rSurfaceNodeIndexSet	The nodes in the element corresponding to this line.
offset	is the lowest index of a node in the original mesh (0 for native triangles or 1 for MEMFEM).

Definition at line 156 of file HeartGeometryInformation.cpp.

References EXCEPTION.

Referenced by HeartGeometryInformation< SPACE_DIM >::GetNodesAtSurface().

template<unsigned SPACE_DIM>

std::vector<double>& HeartGeometryInformation< SPACE_DIM >::rGetDistanceMapEndocardium ( )

inline

Returns: the distance map to the endocardium

Definition at line 237 of file HeartGeometryInformation.hpp.

template<unsigned SPACE_DIM>

std::vector<double>& HeartGeometryInformation< SPACE_DIM >::rGetDistanceMapEpicardium ( )

inline

Returns: the distance map to the epicardium

Definition at line 228 of file HeartGeometryInformation.hpp.

template<unsigned SPACE_DIM>

std::vector<double>& HeartGeometryInformation< SPACE_DIM >::rGetDistanceMapLeftVentricle ( )

inline

Returns: the distance map to the left ventricle

Definition at line 257 of file HeartGeometryInformation.hpp.

template<unsigned SPACE_DIM>

std::vector<double>& HeartGeometryInformation< SPACE_DIM >::rGetDistanceMapRightVentricle ( )

inline

Returns: the distance map to the right ventricle

Definition at line 247 of file HeartGeometryInformation.hpp.

template<unsigned SPACE_DIM>

const std::vector<HeartLayerType>& HeartGeometryInformation< SPACE_DIM >::rGetLayerForEachNode ( )

inline

Returns: the layer for every node in the mesh.

Definition at line 294 of file HeartGeometryInformation.hpp.

Referenced by HeartConfigRelatedCellFactory< SPACE_DIM >::FillInCellularTransmuralAreas().

template<unsigned SPACE_DIM>

const std::vector<unsigned>& HeartGeometryInformation< SPACE_DIM >::rGetNodesOnEndoSurface ( )

inline

Returns: the nodes on the endocardial surface

Definition at line 271 of file HeartGeometryInformation.hpp.

template<unsigned SPACE_DIM>

const std::vector<unsigned>& HeartGeometryInformation< SPACE_DIM >::rGetNodesOnEpiSurface ( )

inline

Returns: the nodes on the epicardial surface

Definition at line 264 of file HeartGeometryInformation.hpp.

template<unsigned SPACE_DIM>

const std::vector<unsigned>& HeartGeometryInformation< SPACE_DIM >::rGetNodesOnLVSurface ( )

inline

Returns: the nodes on the endocardial left ventricular surface

Definition at line 278 of file HeartGeometryInformation.hpp.

template<unsigned SPACE_DIM>

const std::vector<unsigned>& HeartGeometryInformation< SPACE_DIM >::rGetNodesOnRVSurface ( )

inline

Returns: the nodes on the endocardial right ventricular surface

Definition at line 285 of file HeartGeometryInformation.hpp.

template<unsigned SPACE_DIM>

void HeartGeometryInformation< SPACE_DIM >::WriteLayerForEachNode	(	std::string	outputDir,
		std::string	file
	)

Write the layer for each node. DetermineLayerForEachNode() must have been called first.

Parameters

outputDir	Output directory - note not cleaned
file	Output file

Definition at line 378 of file HeartGeometryInformation.cpp.

References PetscTools::AmMaster(), PetscTools::Barrier(), AbstractMesh< ELEMENT_DIM, SPACE_DIM >::GetNumNodes(), HeartGeometryInformation< SPACE_DIM >::mLayerForEachNode, HeartGeometryInformation< SPACE_DIM >::mpMesh, and OutputFileHandler::OpenOutputFile().

Referenced by HeartGeometryInformation< ELEMENT_DIM >::rGetLayerForEachNode().

Member Data Documentation

template<unsigned SPACE_DIM>

const HeartRegionType HeartGeometryInformation< SPACE_DIM >::LEFT_SEPTUM =1003

static

Left portion of the septum

Definition at line 162 of file HeartGeometryInformation.hpp.

Referenced by HeartGeometryInformation< SPACE_DIM >::GetDistanceToEndo(), and HeartGeometryInformation< SPACE_DIM >::GetHeartRegion().

template<unsigned SPACE_DIM>

const double HeartGeometryInformation< SPACE_DIM >::LEFT_SEPTUM_SIZE = 2.0/3.0

staticprivate

Area of the septum considered to belong to the left septum (relative to 1)

Definition at line 67 of file HeartGeometryInformation.hpp.

Referenced by HeartGeometryInformation< SPACE_DIM >::GetHeartRegion().

template<unsigned SPACE_DIM>

const HeartRegionType HeartGeometryInformation< SPACE_DIM >::LEFT_VENTRICLE_SURFACE =1005

static

Endocardial surface of the left ventricle

Definition at line 166 of file HeartGeometryInformation.hpp.

Referenced by HeartGeometryInformation< SPACE_DIM >::GetDistanceToEndo().

template<unsigned SPACE_DIM>

const HeartRegionType HeartGeometryInformation< SPACE_DIM >::LEFT_VENTRICLE_WALL =1001

static

Todo:: #1703 Perhaps add these constants to HeartConfig...

Left ventricular wall

Definition at line 158 of file HeartGeometryInformation.hpp.

Referenced by HeartGeometryInformation< SPACE_DIM >::GetDistanceToEndo(), and HeartGeometryInformation< SPACE_DIM >::GetHeartRegion().

template<unsigned SPACE_DIM>

std::vector<double> HeartGeometryInformation< SPACE_DIM >::mDistMapEndocardium

private

Vector to store the distance map to endocardium

Definition at line 134 of file HeartGeometryInformation.hpp.

Referenced by HeartGeometryInformation< SPACE_DIM >::GetDistanceToEndo(), HeartGeometryInformation< SPACE_DIM >::HeartGeometryInformation(), and HeartGeometryInformation< ELEMENT_DIM >::rGetDistanceMapEndocardium().

template<unsigned SPACE_DIM>

std::vector<double> HeartGeometryInformation< SPACE_DIM >::mDistMapEpicardium

private

Vector to store the distance map to epicardium

Definition at line 131 of file HeartGeometryInformation.hpp.

Referenced by HeartGeometryInformation< SPACE_DIM >::GetDistanceToEndo(), HeartGeometryInformation< SPACE_DIM >::GetDistanceToEpi(), HeartGeometryInformation< SPACE_DIM >::GetHeartRegion(), HeartGeometryInformation< SPACE_DIM >::HeartGeometryInformation(), and HeartGeometryInformation< ELEMENT_DIM >::rGetDistanceMapEpicardium().

template<unsigned SPACE_DIM>

std::vector<double> HeartGeometryInformation< SPACE_DIM >::mDistMapLeftVentricle

private

Vector to store the distance map to the left ventricle surface

Definition at line 140 of file HeartGeometryInformation.hpp.

Referenced by HeartGeometryInformation< SPACE_DIM >::GetDistanceToEndo(), HeartGeometryInformation< SPACE_DIM >::GetHeartRegion(), HeartGeometryInformation< SPACE_DIM >::HeartGeometryInformation(), and HeartGeometryInformation< ELEMENT_DIM >::rGetDistanceMapLeftVentricle().

template<unsigned SPACE_DIM>

std::vector<double> HeartGeometryInformation< SPACE_DIM >::mDistMapRightVentricle

private

Vector to store the distance map to the right ventricle surface

Definition at line 137 of file HeartGeometryInformation.hpp.

Referenced by HeartGeometryInformation< SPACE_DIM >::GetDistanceToEndo(), HeartGeometryInformation< SPACE_DIM >::GetHeartRegion(), HeartGeometryInformation< SPACE_DIM >::HeartGeometryInformation(), and HeartGeometryInformation< ELEMENT_DIM >::rGetDistanceMapRightVentricle().

template<unsigned SPACE_DIM>

std::vector<unsigned> HeartGeometryInformation< SPACE_DIM >::mEndoSurface

private

The nodes on the endocardial surface (only used in the 2 surface case)

Definition at line 75 of file HeartGeometryInformation.hpp.

Referenced by HeartGeometryInformation< SPACE_DIM >::HeartGeometryInformation(), and HeartGeometryInformation< ELEMENT_DIM >::rGetNodesOnEndoSurface().

template<unsigned SPACE_DIM>

std::vector<unsigned> HeartGeometryInformation< SPACE_DIM >::mEpiSurface

private

The nodes on the epicardial surface

Definition at line 72 of file HeartGeometryInformation.hpp.

Referenced by HeartGeometryInformation< SPACE_DIM >::HeartGeometryInformation(), and HeartGeometryInformation< ELEMENT_DIM >::rGetNodesOnEpiSurface().

template<unsigned SPACE_DIM>

std::vector<HeartLayerType> HeartGeometryInformation< SPACE_DIM >::mLayerForEachNode

private

Vector to store the layer for each node

Definition at line 146 of file HeartGeometryInformation.hpp.

Referenced by HeartGeometryInformation< SPACE_DIM >::DetermineLayerForEachNode(), HeartGeometryInformation< SPACE_DIM >::HeartGeometryInformation(), HeartGeometryInformation< ELEMENT_DIM >::rGetLayerForEachNode(), and HeartGeometryInformation< SPACE_DIM >::WriteLayerForEachNode().

template<unsigned SPACE_DIM>

std::vector<unsigned> HeartGeometryInformation< SPACE_DIM >::mLVSurface

private

The nodes on the endocardial left ventricular surface (only used in the 3 surface case)

Definition at line 78 of file HeartGeometryInformation.hpp.

Referenced by HeartGeometryInformation< SPACE_DIM >::HeartGeometryInformation(), and HeartGeometryInformation< ELEMENT_DIM >::rGetNodesOnLVSurface().

template<unsigned SPACE_DIM>

unsigned HeartGeometryInformation< SPACE_DIM >::mNumberOfSurfacesProvided

private

Flag used to tell the methods whether two or three surfaces have been supplied

Definition at line 143 of file HeartGeometryInformation.hpp.

Referenced by HeartGeometryInformation< SPACE_DIM >::GetDistanceToEndo(), and HeartGeometryInformation< SPACE_DIM >::HeartGeometryInformation().

template<unsigned SPACE_DIM>

AbstractTetrahedralMesh<SPACE_DIM,SPACE_DIM>* HeartGeometryInformation< SPACE_DIM >::mpMesh

private

The mesh of the problem

Definition at line 128 of file HeartGeometryInformation.hpp.

Referenced by HeartGeometryInformation< SPACE_DIM >::CalculateBoundingBoxOfSurface(), HeartGeometryInformation< SPACE_DIM >::DetermineLayerForEachNode(), HeartGeometryInformation< SPACE_DIM >::GetNodesAtSurface(), HeartGeometryInformation< SPACE_DIM >::HeartGeometryInformation(), and HeartGeometryInformation< SPACE_DIM >::WriteLayerForEachNode().

template<unsigned SPACE_DIM>

std::vector<unsigned> HeartGeometryInformation< SPACE_DIM >::mRVSurface

private

The nodes on the endocardial right ventricular surface (only used in the 3 surface case)

Definition at line 81 of file HeartGeometryInformation.hpp.

Referenced by HeartGeometryInformation< SPACE_DIM >::HeartGeometryInformation(), and HeartGeometryInformation< ELEMENT_DIM >::rGetNodesOnRVSurface().

template<unsigned SPACE_DIM>

const HeartRegionType HeartGeometryInformation< SPACE_DIM >::RIGHT_SEPTUM =1004

static

Right portion of the septum

Definition at line 164 of file HeartGeometryInformation.hpp.

Referenced by HeartGeometryInformation< SPACE_DIM >::GetDistanceToEndo(), and HeartGeometryInformation< SPACE_DIM >::GetHeartRegion().

template<unsigned SPACE_DIM>

const double HeartGeometryInformation< SPACE_DIM >::RIGHT_SEPTUM_SIZE = 1.0/3.0

staticprivate

Area of the septum considered to belong to the right septum (relative to 1)

Definition at line 69 of file HeartGeometryInformation.hpp.

template<unsigned SPACE_DIM>

const HeartRegionType HeartGeometryInformation< SPACE_DIM >::RIGHT_VENTRICLE_SURFACE =1006

static

Endocardial surface of the right ventricle

Definition at line 168 of file HeartGeometryInformation.hpp.

Referenced by HeartGeometryInformation< SPACE_DIM >::GetDistanceToEndo().

template<unsigned SPACE_DIM>

const HeartRegionType HeartGeometryInformation< SPACE_DIM >::RIGHT_VENTRICLE_WALL =1002

static

Right ventricular wall

Definition at line 160 of file HeartGeometryInformation.hpp.

Referenced by HeartGeometryInformation< SPACE_DIM >::GetDistanceToEndo(), and HeartGeometryInformation< SPACE_DIM >::GetHeartRegion().

template<unsigned SPACE_DIM>

const HeartRegionType HeartGeometryInformation< SPACE_DIM >::UNKNOWN =1007

static

Unknown node type (should never occur...)

Definition at line 170 of file HeartGeometryInformation.hpp.

Referenced by HeartGeometryInformation< SPACE_DIM >::GetDistanceToEndo(), and HeartGeometryInformation< SPACE_DIM >::GetHeartRegion().

The documentation for this class was generated from the following files:

heart/src/problem/HeartGeometryInformation.hpp
heart/src/problem/HeartGeometryInformation.cpp

Public Member Functions

Static Public Attributes

Private Member Functions

Private Attributes

Static Private Attributes

Detailed Description

template<unsigned SPACE_DIM> class HeartGeometryInformation< SPACE_DIM >

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation

template<unsigned SPACE_DIM>
class HeartGeometryInformation< SPACE_DIM >