#include <ImplicitCardiacMechanicsSolver.hpp>

Inheritance diagram for ImplicitCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >:

Collaboration diagram for ImplicitCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >:

Public Member Functions
	ImplicitCardiacMechanicsSolver (QuadraticMesh< DIM > &rQuadMesh, ElectroMechanicsProblemDefinition< DIM > &rProblemDefinition, std::string outputDirectory)

virtual	~ImplicitCardiacMechanicsSolver ()

void	Solve (double time, double nextTime, double odeTimestep)

Public Member Functions inherited from AbstractCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >
	AbstractCardiacMechanicsSolver (QuadraticMesh< DIM > &rQuadMesh, ElectroMechanicsProblemDefinition< DIM > &rProblemDefinition, std::string outputDirectory)

virtual	~AbstractCardiacMechanicsSolver ()

void	SetFineCoarseMeshPair (FineCoarseMeshPair< DIM > *pMeshPair)

unsigned	GetTotalNumQuadPoints ()

virtual GaussianQuadratureRule< DIM > *	GetQuadratureRule ()

std::map< unsigned, DataAtQuadraturePoint > &	rGetQuadPointToDataAtQuadPointMap ()

void	SetConstantFibreSheetDirections (const c_matrix< double, DIM, DIM > &rFibreSheetMatrix)

void	SetVariableFibreSheetDirections (const FileFinder &rOrthoFile, bool definedPerQuadraturePoint)

void	SetCalciumAndVoltage (std::vector< double > &rCalciumConcentrations, std::vector< double > &rVoltages)

void	ComputeDeformationGradientAndStretchInEachElement (std::vector< c_matrix< double, DIM, DIM > > &rDeformationGradients, std::vector< double > &rStretches)

Public Member Functions inherited from AbstractCardiacMechanicsSolverInterface< DIM >
	AbstractCardiacMechanicsSolverInterface ()

virtual	~AbstractCardiacMechanicsSolverInterface ()

Private Member Functions
bool	IsImplicitSolver ()

void	GetActiveTensionAndTensionDerivs (double currentFibreStretch, unsigned currentQuadPointGlobalIndex, bool assembleJacobian, double &rActiveTension, double &rDerivActiveTensionWrtLambda, double &rDerivActiveTensionWrtDLambdaDt)

Friends
class	TestImplicitCardiacMechanicsSolver

class	TestExplicitCardiacMechanicsSolver

Additional Inherited Members
Protected Member Functions inherited from AbstractCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >
void	AddActiveStressAndStressDerivative (c_matrix< double, DIM, DIM > &rC, unsigned elementIndex, unsigned currentQuadPointGlobalIndex, c_matrix< double, DIM, DIM > &rT, FourthOrderTensor< DIM, DIM, DIM, DIM > &rDTdE, bool addToDTdE)

void	SetupChangeOfBasisMatrix (unsigned elementIndex, unsigned currentQuadPointGlobalIndex)

void	Initialise ()

Protected Attributes inherited from AbstractCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >
std::map< unsigned, DataAtQuadraturePoint >	mQuadPointToDataAtQuadPointMap

std::map< unsigned, DataAtQuadraturePoint >::iterator	mMapIterator

FineCoarseMeshPair< DIM > *	mpMeshPair

unsigned	mTotalQuadPoints

double	mCurrentTime

double	mNextTime

double	mOdeTimestep

c_matrix< double, DIM, DIM >	mConstantFibreSheetDirections

std::vector< c_matrix< double, DIM, DIM > > *	mpVariableFibreSheetDirections

bool	mFibreSheetDirectionsDefinedByQuadraturePoint

c_vector< double, DIM >	mCurrentElementFibreDirection

c_vector< double, DIM >	mCurrentElementSheetDirection

c_vector< double, DIM >	mCurrentElementSheetNormalDirection

ElectroMechanicsProblemDefinition< DIM > &	mrElectroMechanicsProblemDefinition

Static Protected Attributes inherited from AbstractCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >
static const unsigned	NUM_VERTICES_PER_ELEMENT = ELASTICITY_SOLVER::NUM_VERTICES_PER_ELEMENT

Detailed Description

template<class ELASTICITY_SOLVER, unsigned DIM>
class ImplicitCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >

Implicit Cardiac Mechanics Solver

The first template parameter should be either IncompressibleNonlinearElasticitySolver or CompressibleNonlinearElasticityAssembler; this will be the class that this class ultimately inherits from.

Solves cardiac mechanics implicitly (together with the contraction models for determining the active tension), taking in the intracellular calcium concentration. See CardiacElectroMechanicsProblem documentation for more detail.

Definition at line 59 of file ImplicitCardiacMechanicsSolver.hpp.

Constructor & Destructor Documentation

template<class ELASTICITY_SOLVER , unsigned DIM>

ImplicitCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >::ImplicitCardiacMechanicsSolver	(	QuadraticMesh< DIM > &	rQuadMesh,
		ElectroMechanicsProblemDefinition< DIM > &	rProblemDefinition,
		std::string	outputDirectory
	)

Constructor

Parameters

rQuadMesh	A reference to the mesh.
rProblemDefinition	Object defining body force and boundary conditions
outputDirectory	The output directory, relative to TEST_OUTPUT

Definition at line 39 of file ImplicitCardiacMechanicsSolver.cpp.

Referenced by ImplicitCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >::IsImplicitSolver().

template<class ELASTICITY_SOLVER , unsigned DIM>

ImplicitCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >::~ImplicitCardiacMechanicsSolver ( )

virtual

Destructor

Definition at line 51 of file ImplicitCardiacMechanicsSolver.cpp.

Referenced by ImplicitCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >::IsImplicitSolver().

Member Function Documentation

template<class ELASTICITY_SOLVER , unsigned DIM>

void ImplicitCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >::GetActiveTensionAndTensionDerivs	(	double	currentFibreStretch,
		unsigned	currentQuadPointGlobalIndex,
		bool	assembleJacobian,
		double &	rActiveTension,
		double &	rDerivActiveTensionWrtLambda,
		double &	rDerivActiveTensionWrtDLambdaDt
	)

privatevirtual

A method called by AbstractCardiacMechanicsSolver::AssembleOnElement(), providing the active tension (and other info) at a particular quadrature point. This version uses C to determine the current stretch and stretch rate, and integrates the contraction model ODEs to determine the active tension, and derivatives of the active tension with respect to stretch and stretch rate.

Parameters

currentFibreStretch	The stretch in the fibre direction
currentQuadPointGlobalIndex	Quadrature point integrand currently being evaluated at in AssembleOnElement.
assembleJacobian	A bool stating whether to assemble the Jacobian matrix.
rActiveTension	The returned active tension
rDerivActiveTensionWrtLambda	The returned dT_dLam, derivative of active tension wrt stretch
rDerivActiveTensionWrtDLambdaDt	The returned dT_dLamDot, derivative of active tension wrt stretch rate

Implements AbstractCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >.

Definition at line 89 of file ImplicitCardiacMechanicsSolver.cpp.

References DataAtQuadraturePoint_::ContractionModel, EXCEPTION, AbstractContractionModel::GetNextActiveTension(), AbstractCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >::mCurrentTime, AbstractCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >::mMapIterator, AbstractCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >::mNextTime, AbstractCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >::mOdeTimestep, AbstractCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >::mQuadPointToDataAtQuadPointMap, NEVER_REACHED, AbstractContractionModel::RunDoNotUpdate(), AbstractContractionModel::SetStretchAndStretchRate(), DataAtQuadraturePoint_::Stretch, and DataAtQuadraturePoint_::StretchLastTimeStep.

Referenced by ImplicitCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >::IsImplicitSolver().

template<class ELASTICITY_SOLVER, unsigned DIM>

bool ImplicitCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >::IsImplicitSolver ( )

inlineprivatevirtual

Returns: true if this solver is an implicit solver (overloaded pure method)

Implements AbstractCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >.

Definition at line 65 of file ImplicitCardiacMechanicsSolver.hpp.

References ImplicitCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >::GetActiveTensionAndTensionDerivs(), ImplicitCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >::ImplicitCardiacMechanicsSolver(), ImplicitCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >::Solve(), and ImplicitCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >::~ImplicitCardiacMechanicsSolver().

template<class ELASTICITY_SOLVER , unsigned DIM>

void ImplicitCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >::Solve	(	double	time,
		double	nextTime,
		double	odeTimestep
	)

virtual

Solve for the deformation using quasi-static nonlinear elasticity. (not dynamic nonlinear elasticity, despite the times taken in - just ONE deformation is solved for. The cell models are integrated implicitly over the time range using the ODE timestep provided, as part of the solve, and updated at the end once the solution has been found, as is lambda.

Parameters

time	the current time
nextTime	the next time
odeTimestep	the ODE timestep

Implements AbstractCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >.

Definition at line 57 of file ImplicitCardiacMechanicsSolver.cpp.

References AbstractCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >::mCurrentTime, AbstractCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >::mNextTime, AbstractCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >::mOdeTimestep, AbstractCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >::mQuadPointToDataAtQuadPointMap, and AbstractContractionModel::UpdateStateVariables().

Referenced by ImplicitCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >::IsImplicitSolver().

The documentation for this class was generated from the following files:

heart/src/solver/mechanics/ImplicitCardiacMechanicsSolver.hpp
heart/src/solver/mechanics/ImplicitCardiacMechanicsSolver.cpp

Public Member Functions

Private Member Functions

Friends

Additional Inherited Members

Detailed Description

template<class ELASTICITY_SOLVER, unsigned DIM> class ImplicitCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >

Constructor & Destructor Documentation

Member Function Documentation

template<class ELASTICITY_SOLVER, unsigned DIM>
class ImplicitCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >