Chaste  Release::2017.1
Public Member Functions | Private Member Functions | Friends | List of all members
ParallelCellsGenerator< CELL_CYCLE_MODEL, DIM > Class Template Reference

#include <ParallelCellsGenerator.hpp>

+ Collaboration diagram for ParallelCellsGenerator< CELL_CYCLE_MODEL, DIM >:

Public Member Functions

void GenerateParallelCells (std::string archivePath, std::vector< CellPtr > &cells, NodesOnlyMesh< DIM > &mesh, boost::shared_ptr< AbstractCellProperty > pCellProliferativeType=boost::shared_ptr< AbstractCellProperty >())
 

Private Member Functions

c_vector< double, 2 *DIM > GetArchiveBoundingBox (std::string archivePath)
 

Friends

class TestParallelCellsGenerator
 

Detailed Description

template<class CELL_CYCLE_MODEL, unsigned DIM>
class ParallelCellsGenerator< CELL_CYCLE_MODEL, DIM >

A helper class for generating a vector of cells and a NodesOnlyMesh from an archive file without loading all cells to memory on each processor.

Definition at line 50 of file ParallelCellsGenerator.hpp.

Member Function Documentation

template<class CELL_CYCLE_MODEL , unsigned DIM>
void ParallelCellsGenerator< CELL_CYCLE_MODEL, DIM >::GenerateParallelCells ( std::string  archivePath,
std::vector< CellPtr > &  cells,
NodesOnlyMesh< DIM > &  mesh,
boost::shared_ptr< AbstractCellProperty >  pCellProliferativeType = boost::shared_ptr<AbstractCellProperty>() 
)

Generate nodes and cells for a given decomposition of space, dictated by mesh.

Parameters
archivePaththe name of the file containing the cell locations
cellsa reference to an empty vector into which cells can be inserted.
mesha reference to the mesh that will store the nodes.
pCellProliferativeTypethe proliferative type of the cells.

Definition at line 81 of file ParallelCellsGenerator.hpp.

References NodesOnlyMesh< SPACE_DIM >::AddNode(), ParallelCellsGenerator< CELL_CYCLE_MODEL, DIM >::GetArchiveBoundingBox(), NodesOnlyMesh< SPACE_DIM >::GetMaximumInteractionDistance(), NodesOnlyMesh< SPACE_DIM >::GetMaximumNodeIndex(), CellPropertyRegistry::Instance(), NodesOnlyMesh< SPACE_DIM >::IsOwned(), NodesOnlyMesh< SPACE_DIM >::ReMesh(), and NodesOnlyMesh< SPACE_DIM >::SetInitialBoxCollection().

template<class CELL_CYCLE_MODEL , unsigned DIM>
c_vector< double, 2 *DIM > ParallelCellsGenerator< CELL_CYCLE_MODEL, DIM >::GetArchiveBoundingBox ( std::string  archivePath)
private

Calculate the bounding box of all positions in the archive path.

Parameters
archivePaththe path to the cell location archive.
Returns
the bounding box in format [xmin, xmax...].

Definition at line 144 of file ParallelCellsGenerator.hpp.

References EXCEPTION.

Referenced by ParallelCellsGenerator< CELL_CYCLE_MODEL, DIM >::GenerateParallelCells().

The documentation for this class was generated from the following file: