BidomainAssembler.hpp

00001 
00002 /*
00003 
00004 Copyright (C) University of Oxford, 2005-2011
00005 
00006 University of Oxford means the Chancellor, Masters and Scholars of the
00007 University of Oxford, having an administrative office at Wellington
00008 Square, Oxford OX1 2JD, UK.
00009 
00010 This file is part of Chaste.
00011 
00012 Chaste is free software: you can redistribute it and/or modify it
00013 under the terms of the GNU Lesser General Public License as published
00014 by the Free Software Foundation, either version 2.1 of the License, or
00015 (at your option) any later version.
00016 
00017 Chaste is distributed in the hope that it will be useful, but WITHOUT
00018 ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
00019 FITNESS FOR A PARTICULAR PURPOSE.  See the GNU Lesser General Public
00020 License for more details. The offer of Chaste under the terms of the
00021 License is subject to the License being interpreted in accordance with
00022 English Law and subject to any action against the University of Oxford
00023 being under the jurisdiction of the English Courts.
00024 
00025 You should have received a copy of the GNU Lesser General Public License
00026 along with Chaste. If not, see <http://www.gnu.org/licenses/>.
00027 
00028 */
00029 
00030 
00031 #ifndef BIDOMAINASSEMBLER_HPP_
00032 #define BIDOMAINASSEMBLER_HPP_
00033 
00034 #include "AbstractCardiacFeVolumeIntegralAssembler.hpp"
00035 #include "BidomainTissue.hpp"
00036 #include "HeartConfig.hpp"
00037 
00062 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
00063 class BidomainAssembler : public AbstractCardiacFeVolumeIntegralAssembler<ELEMENT_DIM,SPACE_DIM,2,false,true,CARDIAC>
00064 {
00065 protected:
00067     HeartConfig* mpConfig;
00068 
00082     virtual c_matrix<double,2*(ELEMENT_DIM+1),2*(ELEMENT_DIM+1)> ComputeMatrixTerm(
00083         c_vector<double, ELEMENT_DIM+1> &rPhi,
00084         c_matrix<double, SPACE_DIM, ELEMENT_DIM+1> &rGradPhi,
00085         ChastePoint<SPACE_DIM> &rX,
00086         c_vector<double,2> &rU,
00087         c_matrix<double, 2, SPACE_DIM> &rGradU /* not used */,
00088         Element<ELEMENT_DIM,SPACE_DIM>* pElement);
00089 
00090 public:
00091 
00099     BidomainAssembler(AbstractTetrahedralMesh<ELEMENT_DIM,SPACE_DIM>* pMesh,
00100                       BidomainTissue<SPACE_DIM>* pTissue,
00101                       unsigned numQuadPoints = 2);
00102 
00106     ~BidomainAssembler()
00107     {
00108     }
00109 };
00110 
00111 #endif /*BIDOMAINASSEMBLER_HPP_*/