BidomainTissue< SPACE_DIM > Class Template Reference

#include <BidomainTissue.hpp>

Inherits AbstractCardiacTissue< SPACE_DIM >.

Collaboration diagram for BidomainTissue< SPACE_DIM >:

Public Member Functions
	BidomainTissue (AbstractCardiacCellFactory< SPACE_DIM > *pCellFactory, bool exchangeHalos=false)
	BidomainTissue (AbstractTetrahedralMesh< SPACE_DIM, SPACE_DIM > *pMesh)
	~BidomainTissue ()
const c_matrix< double, SPACE_DIM, SPACE_DIM > &	rGetExtracellularConductivityTensor (unsigned elementIndex)
Private Member Functions
template<class Archive >
void	serialize (Archive &archive, const unsigned int version)
void	CreateExtracellularConductivityTensors ()
Private Attributes
AbstractConductivityTensors < SPACE_DIM, SPACE_DIM > *	mpExtracellularConductivityTensors
Friends
class	TestBidomainTissue
class	boost::serialization::access

Detailed Description

template<unsigned SPACE_DIM>
class BidomainTissue< SPACE_DIM >

BidomainTissue class.

See documentation for AbstractCardiacTissue. This class also has extracellular conductivity tensors.

Definition at line 53 of file BidomainTissue.hpp.

Constructor & Destructor Documentation

template<unsigned SPACE_DIM>

BidomainTissue< SPACE_DIM >::BidomainTissue	(	AbstractCardiacCellFactory< SPACE_DIM > *	pCellFactory,
		bool	exchangeHalos = `false`
	)			`[inline]`

Constructor sets up extracellular conductivity tensors.

Parameters:

	pCellFactory	factory to pass on to the base class constructor
	exchangeHalos	used in state-variable interpolation. Defaults to false.

Definition at line 38 of file BidomainTissue.cpp.

References BidomainTissue< SPACE_DIM >::CreateExtracellularConductivityTensors().

template<unsigned SPACE_DIM>

BidomainTissue< SPACE_DIM >::BidomainTissue ( AbstractTetrahedralMesh< SPACE_DIM, SPACE_DIM > * pMesh ) [inline]

Archiving constructor

Parameters:

pMesh

a pointer to the AbstractTetrahedral mesh (recovered from archive).

Definition at line 47 of file BidomainTissue.cpp.

References BidomainTissue< SPACE_DIM >::CreateExtracellularConductivityTensors().

template<unsigned SPACE_DIM>

BidomainTissue< SPACE_DIM >::~BidomainTissue ( ) [inline]

Destructor

Definition at line 159 of file BidomainTissue.cpp.

References BidomainTissue< SPACE_DIM >::mpExtracellularConductivityTensors.

Member Function Documentation

template<unsigned SPACE_DIM>

void BidomainTissue< SPACE_DIM >::CreateExtracellularConductivityTensors ( ) [inline, private]

Convenience method for extracellular conductivity tensors creation

Definition at line 54 of file BidomainTissue.cpp.

References RelativeTo::AbsoluteOrCwd, FileFinder::Exists(), HeartConfig::GetConductivityHeterogeneities(), HeartConfig::GetConductivityHeterogeneitiesProvided(), HeartConfig::GetConductivityMedia(), HeartConfig::GetExtracellularConductivities(), HeartConfig::GetLoadMesh(), AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::GetNumLocalElements(), AbstractConductivityTensors< ELEMENT_DIM, SPACE_DIM >::Init(), HeartConfig::Instance(), HeartConfig::IsMeshProvided(), AbstractCardiacTissue< SPACE_DIM >::mFibreFilePathNoExtension, AbstractCardiacTissue< SPACE_DIM >::mpConfig, BidomainTissue< SPACE_DIM >::mpExtracellularConductivityTensors, AbstractCardiacTissue< SPACE_DIM >::mpMesh, NEVER_REACHED, PetscTools::ReplicateException(), AbstractConductivityTensors< ELEMENT_DIM, SPACE_DIM >::SetConstantConductivities(), AbstractConductivityTensors< ELEMENT_DIM, SPACE_DIM >::SetFibreOrientationFile(), and AbstractConductivityTensors< ELEMENT_DIM, SPACE_DIM >::SetNonConstantConductivities().

Referenced by BidomainTissue< SPACE_DIM >::BidomainTissue().

template<unsigned SPACE_DIM>

const c_matrix< double, SPACE_DIM, SPACE_DIM > & BidomainTissue< SPACE_DIM >::rGetExtracellularConductivityTensor ( unsigned elementIndex ) [inline, virtual]