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| AdaptiveBidomainProblem | CvodeData_ | LinearSpringWithVariableSpringConstantsForce | QuadraticBasisFunction |
| AbstractAlgebraicContractionModel | AdaptiveTetrahedralMesh | Cylindrical2dMesh | LinearSystem | QuadraticBasisFunction< 0 > |
| AbstractAssemblerSolverHybrid | AdhesionPottsUpdateRule | Cylindrical2dVertexMesh | LogFile | QuadraticMesh |
| AbstractBackwardEulerCardiacCell | AdvectionCaUpdateRule | CylindricalHoneycombMeshGenerator |
| QuadraturePointsGroup |
| AbstractBidomainSolver | Alarcon2004OxygenBasedCellCycleModel | CylindricalHoneycombVertexMeshGenerator | MassMatrixAssembler |
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| AbstractBoundaryCondition | Alarcon2004OxygenBasedCellCycleOdeSystem |
| MechanicsEventHandler | RadialSloughingCellKiller |
| AbstractBoundaryConditionsContainer | ApcOneHitCellMutationState | DataWriterVariable | MemfemMeshReader | RampedQuarterStimulusCellFactory |
| AbstractCachedMeshReader | ApcTwoHitCellMutationState | DeformedBoundaryElement | memorypool | RandomCellKiller |
| AbstractCardiacCell | ApoptoticCellProperty | DeltaNotchCellCycleModel | mesh | RandomNumberGenerator |
| AbstractCardiacCellFactory | ArchiveLocationInfo | DeltaNotchOdeSystem | MeshalyzerMeshWriter | RegularStimulus |
| AbstractCardiacCellInterface | ArchiveOpener | DeltaNotchOffLatticeSimulation | MeshBasedCellPopulation | RegularStimulusZeroNetCharge |
| AbstractCardiacCellWithModifiers | AveragedSourcePde | DifferentialAdhesionPottsUpdateRule | MeshBasedCellPopulationWithGhostNodes | RelativeTo |
| AbstractCardiacFeVolumeIntegralAssembler | AxisymmetricConductivityTensors | DiffusionCaUpdateRule | MeshPottsWriterIterators | ReplicatableVector |
| AbstractCardiacMechanicsSolver |
| DiscreteSystemForceCalculator | MeshWriterIterators | RepulsionForce |
| AbstractCardiacMechanicsSolverInterface | BackwardEulerIvpOdeSolver | DistanceMapCalculator | Mirams2010WntOdeSystem | RungeKutta2IvpOdeSolver |
| AbstractCardiacProblem | badsubseg | DistributedTetrahedralMesh | MixedDimensionMesh | RungeKutta4IvpOdeSolver |
| AbstractCardiacTissue | badtriang | DistributedTetrahedralMeshPartitionType | MockEulerIvpOdeSolver | RungeKuttaFehlbergIvpOdeSolver |
| AbstractCaUpdateRule | BathCellFactory | DistributedVector | MonodomainAssembler |
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| AbstractCellBasedSimulation | behavior | DistributedVectorException | MonodomainCorrectionTermAssembler | S1S2Stimulus |
| AbstractCellBasedTestSuite | BetaCateninOneHitCellMutationState | DistributedVectorFactory | MonodomainProblem | SchmidCostaExponentialLaw2d |
| AbstractCellCycleModel | BidomainAssembler | DummyModifier | MonodomainSolver | SerializableSingleton |
| AbstractCellCycleModelOdeSolver | BidomainCorrectionTermAssembler | DynamicCellModelLoader | MonodomainStiffnessMatrixAssembler | SimpleDataWriter |
| AbstractCellKiller | BidomainMassMatrixAssembler | DynamicModelLoaderRegistry | MonodomainTissue | SimpleLinearEllipticSolver |
| AbstractCellMutationState | BidomainNeumannSurfaceTermAssembler | DynamicRestitutionStimulus | MooneyRivlinMaterialLaw | SimpleLinearParabolicSolver |
| AbstractCellPopulation | BidomainProblem |
| MultiStimulus | SimpleNewtonNonlinearSolver |
| AbstractCellPopulationBoundaryCondition | BidomainSolver | TetrahedralMesh::EdgeIterator | MutableMesh | SimpleNonlinearEllipticSolver |
| AbstractCellProperty | BidomainTissue | ELASTICITY_SOLVER | MutableVertexMesh | SimpleOxygenBasedCellCycleModel |
| AbstractCentreBasedCellPopulation | BidomainWithBathAssembler | Electrodes |
| SimplePetscNonlinearSolver |
| AbstractChasteRegion | BidomainWithBathProblem | ElectrodesStimulusFactory | NagaiHondaForce | SimpleStimulus |
| AbstractCompressibleMaterialLaw | BoundaryConditionsContainer | ElectroMechanicsProblemDefinition | Nash2004ContractionModel | SimpleUniformSourcePde |
| AbstractConductivityModifier | BoundaryElement | Element | NashHunterPoleZeroLaw | SimpleWntCellCycleModel |
| AbstractConductivityTensors | Box | ElementAndWeights | NaturalNeumannSurfaceTermAssembler | SimulationTime |
| AbstractContinuumMechanicsAssembler | BoxCollection | ElementData | NhsContractionModel | SingleOdeWntCellCycleModel |
| AbstractContractionModel | BuskeAdhesiveForce | AbstractTetrahedralMesh::ElementIterator | NhsModelWithBackwardSolver | SloughingCellKiller |
| AbstractConvergenceTester | BuskeCompressionForce | enable_shared_from_this (boost) | Node | SolidMechanicsProblemDefinition |
| AbstractCorrectionTermAssembler | BuskeElasticForce | EulerIvpOdeSolver | NodeBasedCellPopulation | SpaceConvergenceTester |
| AbstractCryptStatistics |
| event | NodeBasedCellPopulationWithBuskeUpdate | SphereGeometryBoundaryCondition |
| AbstractCvodeCell | CaBasedCellPopulation | AbstractLookupTableCollection::EventHandler | AbstractMesh::NodeIterator | splaynode |
| AbstractCvodeSystem | CARDIAC_CELL | Exception | NodeMap | MeshBasedCellPopulation::SpringIterator |
| AbstractDataReader | CardiacElectroMechanicsProblem | ExecutableSupport | NodesOnlyMesh | StiffnessMatrixAssembler |
| AbstractDataWriter | CardiacElectroMechProbRegularGeom | ExplicitCardiacMechanicsSolver | NonCachedTetrahedralMesh | StimulusBoundaryCondition |
| AbstractDynamicallyLoadableEntity | CardiacNewtonSolver | ExponentialMaterialLaw | noncopyable (boost) | StochasticDurationCellCycleModel |
| AbstractDynamicLinearPdeSolver | CardiacSimulation | ExtendedBidomainAssembler | NonlinearElasticityTools | StochasticDurationGenerationBasedCellCycleModel |
| AbstractElement | CardiacSimulationArchiver | ExtendedBidomainMassMatrixAssembler | NonPhysiologicalContractionModel | StochasticOxygenBasedCellCycleModel |
| AbstractExtendedBidomainSolver | Cell | ExtendedBidomainNeumannSurfaceTermAssembler | null_deleter | StochasticWntCellCycleModel |
| AbstractFeAssemblerCommon | CellBasedEventHandler | ExtendedBidomainProblem | NumericFileComparison | StokesFlowProblemDefinition |
| AbstractFeAssemblerInterface | CellBasedPdeHandler | ExtendedBidomainSolver |
| StreeterFibreGenerator |
| AbstractFeCableIntegralAssembler | CellBasedPdeSolver | ExtendedBidomainTissue | OdeConvergenceTester | DistributedVector::Stripe |
| AbstractFeSurfaceIntegralAssembler | CellBasedSimulationArchiver |
| OdeLinearSystemSolver | SurfaceAreaConstraintPottsUpdateRule |
| AbstractFeVolumeIntegralAssembler | CellCycleModelOdeHandler | FactorModifier | OdePdeConvergenceTester |
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| AbstractForce | CellCycleModelOdeSolver | FakeBathCell | OdeSolution | TargetedCellKiller |
| AbstractFunctionalCalculator | CellCycleModelOdeSolver< CELL_CYCLE_MODEL, BackwardEulerIvpOdeSolver > | FemlabMeshReader | OdeSystemForCoupledHeatEquation | CxxTest::TestSuite |
| AbstractHdf5Converter | CellLabel | FibreReader | OdeSystemForCoupledHeatEquationWithSource | TetrahedralMesh |
| AbstractIncompressibleMaterialLaw | CellMLToSharedLibraryConverter | FibreWriter | OdeSystemInformation | TimeModifier |
| AbstractIsotropicCompressibleMaterialLaw | CellProperties | FileFinder | OffLatticeSimulation | Timer |
| AbstractIsotropicIncompressibleMaterialLaw | CellPropertyCollection | XmlTools::Finalizer | OnLatticeSimulation | TimeStepper |
| AbstractIvpOdeSolver | CellPropertyRegistry | FineCoarseMeshPair | OperatorSplittingMonodomainSolver | TrianglesMeshReader |
| AbstractLinearEllipticPde | CellsGenerator | FitzHughNagumo1961OdeSystem | OrthotropicConductivityTensors | TrianglesMeshWriter |
| AbstractLinearParabolicPde | CellwiseData | FixedDurationGenerationBasedCellCycleModel | osub | TysonNovak2001OdeSystem |
| AbstractLinearParabolicPdeSystemForCoupledOdeSystem | CellwiseDataGradient | FixedModifier | otri | TysonNovakCellCycleModel |
| AbstractLinearPdeSolver | CellwiseOdeSystemInformation | flipstacker | OutputDirectoryFifoQueue |
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| AbstractLookupTableCollection | CellwiseSourcePde | FourthOrderTensor | OutputFileHandler | VanLeeuwen2009WntSwatCellCycleModelHypothesisOne |
| AbstractMaterialLaw | ChasteBuildInfo | FunctionalBoundaryCondition | OxygenBasedCellKiller | VanLeeuwen2009WntSwatCellCycleModelHypothesisTwo |
| AbstractMesh | ChasteCuboid |
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| VanLeeuwen2009WntSwatCellCycleOdeSystem |
| AbstractMeshReader | ChasteEllipsoid | GaussianQuadratureRule | pack< void(T)> | CombinedOdeSystem::VariableParameterMap |
| AbstractMeshWriter | ChasteNodesList | GeneralisedLinearSpringForce | PapillaryFibreCalculator | version< AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > > (boost::serialization) |
| AbstractModifier | ChastePoint | GeneralPlaneStimulusCellFactory | ParallelColumnDataWriter | version< AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM > > (boost::serialization) |
| AbstractNonlinearAssemblerSolverHybrid | ChastePoint< 0 > | GenericEventHandler | PCBlockDiagonal | version< AbstractChasteRegion< SPACE_DIM > > (boost::serialization) |
| AbstractNonlinearElasticitySolver | ChemotacticForce | CxxTest::GlobalFixture | PCBlockDiagonal::PCBlockDiagonalContext | version< AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > > (boost::serialization) |
| AbstractNonlinearEllipticPde | ChemotaxisPottsUpdateRule |
| PCLDUFactorisation | VertexBasedCellPopulation |
| AbstractNonlinearSolver | DistributedVector::Chunk | Hdf5DataReader | PCLDUFactorisation::PCLDUFactorisationContext | VertexCryptBoundaryForce |
| AbstractOdeBasedCellCycleModel | CmguiDeformedSolutionsWriter | Hdf5DataWriter | PCTwoLevelsBlockDiagonal | VertexElement |
| AbstractOdeBasedContractionModel | CmguiMeshWriter | Hdf5ToCmguiConverter | PCTwoLevelsBlockDiagonal::PCTwoLevelsBlockDiagonalContext | VertexElement< 1, SPACE_DIM > |
| AbstractOdeSystem | CML_noble_varghese_kohl_noble_1998_basic_with_sac | Hdf5ToMeshalyzerConverter | PdeAndBoundaryConditions | VertexElementData |
| AbstractOdeSystemForCoupledPdeSystem | ColumnDataReader | Hdf5ToTxtConverter | PdeConvergenceTester | VertexMesh::VertexElementIterator |
| AbstractOdeSystemInformation | ColumnDataWriter | Hdf5ToVtkConverter | PdeSimulationTime | VertexElementMap |
| AbstractOdeSystemWithAnalyticJacobian | CombinedOdeSystem | HeartConfig | PetscMatTools | VertexMesh |
| AbstractOffLatticeCellPopulation | CombinedOdeSystemInformation | HeartConfigRelatedCellFactory | PetscSetup | VertexMeshReader |
| AbstractOneStepIvpOdeSolver | CommandLineArguments | HeartEventHandler | PetscTools | VertexMeshWriter |
| AbstractOnLatticeCellPopulation | CompareDoubles | HeartFileFinder | PetscVecTools | VoltageInterpolaterOntoMechanicsMesh |
| AbstractParameterisedSystem | CompressibleExponentialLaw | HeartGeometryInformation | PlaneBasedCellKiller | VolumeConstraintPottsUpdateRule |
| AbstractPottsUpdateRule | CompressibleMooneyRivlinMaterialLaw | HeartRegionCode | PlaneBoundaryCondition | VolumeDependentAveragedSourcePde |
| AbstractPurkinjeCellFactory | CompressibleNonlinearElasticitySolver | HeunIvpOdeSolver | PlaneStimulusCellFactory | VolumeTrackedOffLatticeSimulation |
| AbstractRushLarsenCardiacCell | ConstBoundaryCondition | HoneycombMeshGenerator | PoleZeroMaterialLaw | VtkMeshReader |
| AbstractSimpleCellCycleModel | ContactInhibitionCellCycleModel | HoneycombVertexMeshGenerator | PolynomialMaterialLaw3d | VtkMeshWriter |
| AbstractSimpleGenerationBasedCellCycleModel | Node::ContainingBoundaryElementIterator |
| PostProcessingWriter |
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| AbstractStaticLinearPdeSolver | Node::ContainingElementIterator | Identifiable | PottsBasedCellPopulation | Warnings |
| AbstractStimulusFactory | ContinuumMechanicsProblemDefinition | ImplicitCardiacMechanicsSolver | PottsElement | WelikyOsterForce |
| AbstractStimulusFunction | ContractionModelInputParameters_ | IncompressibleNonlinearElasticitySolver | PottsElementData | WildTypeCellMutationState |
| AbstractTetrahedralElement | CorriasBuistICCModified | CombinedOdeSystemInformation::InstancePointers | PottsMesh::PottsElementIterator | WntCellCycleModel |
| AbstractTetrahedralElement< 0, SPACE_DIM > | CorriasBuistSMCModified | DistributedVector::Iterator | PottsMesh | WntCellCycleOdeSystem |
| AbstractTetrahedralMesh | CryptCellsGenerator | AbstractCellPopulation::Iterator | PottsMeshGenerator | WntConcentration |
| AbstractTetrahedralMeshWriter | CryptProjectionForce |
| PottsMeshReader |
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| AbstractTimeAdaptivityController | CryptProjectionStatistics | Kerchoffs2003ContractionModel | PottsMeshWriter | XmlTools |
| AbstractTwoBodyInteractionForce | CryptSimulation1d |
| ProcessSpecificArchive | XmlTransforms |
| AbstractUntemplatedCardiacProblem | CryptSimulation2d | LessThanNode | ProgressReporter |
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| AbstractUntemplatedConvergenceTester | CryptSimulationBoundaryCondition | LinearBasisFunction | PropagationPropertiesCalculator | ZeroNetChargeElectrodes |
| AbstractUntemplatedParameterisedSystem | CryptStatistics | LinearBasisFunction< 0 > | PseudoEcgCalculator | ZeroStimulus |
| AbstractVanLeeuwen2009WntSwatCellCycleModel | CuboidMeshConstructor | LinearParabolicPdeSystemWithCoupledOdeSystemSolver |
| ZeroStimulusCellFactory |
| AbstractWntOdeBasedCellCycleModel | CvodeAdaptor |
