CellwiseOdeSystemInformation< ODE_SYSTEM > Class Template Reference
#include <CellwiseOdeSystemInformation.hpp>
Inherits AbstractOdeSystemInformation.
Public Member Functions | |
| CellwiseOdeSystemInformation () | |
| template<> | |
| void | Initialise () |
| template<> | |
| void | Initialise () |
| template<> | |
| void | Initialise () |
| template<> | |
| void | Initialise () |
| template<> | |
| void | Initialise () |
Protected Member Functions | |
| void | Initialise () |
Detailed Description
template<class ODE_SYSTEM>
class CellwiseOdeSystemInformation< ODE_SYSTEM >
Concrete implementation of AbstractOdeSystemInformation designed for use where some of the system information *can* vary across instances. As with OdeSystemInformation it is templated by ODE system class, to aid developers of ODE system classes - only a specialisation of the Initialise method is required.
Note: unexpected behaviour can occur if ODE system objects are copied (via copy constructor or operator=). The AbstractOdeSystem maintains a smart pointer (boost::shared_ptr) to the system information object. Hence both the original and the copy will share the same information object.
Definition at line 46 of file CellwiseOdeSystemInformation.hpp.
Constructor & Destructor Documentation
| CellwiseOdeSystemInformation< ODE_SYSTEM >::CellwiseOdeSystemInformation | ( | ) | [inline] |
Default constructor; calls Initialise.
Designed to be used as follows by ODE system classes in their constructors: mpSystemInfo.reset(new CellwiseOdeSystemInformation<CLASS>);
Definition at line 80 of file CellwiseOdeSystemInformation.hpp.
References CellwiseOdeSystemInformation< ODE_SYSTEM >::Initialise().
Member Function Documentation
| void CellwiseOdeSystemInformation< WntCellCycleOdeSystem >::Initialise | ( | ) | [inline, virtual] |
Initialise the ODE system information.
This must be provided by subclasses.
Implements AbstractOdeSystemInformation.
Definition at line 298 of file WntCellCycleOdeSystem.cpp.
References AbstractOdeSystemInformation::mInitialConditions, AbstractOdeSystemInformation::mInitialised, AbstractOdeSystemInformation::mVariableNames, AbstractOdeSystemInformation::mVariableUnits, and NAN.
| void CellwiseOdeSystemInformation< VanLeeuwen2009WntSwatCellCycleOdeSystem >::Initialise | ( | ) | [inline, virtual] |
Initialise the ODE system information.
This must be provided by subclasses.
Implements AbstractOdeSystemInformation.
Definition at line 382 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.cpp.
References AbstractOdeSystemInformation::mInitialConditions, AbstractOdeSystemInformation::mInitialised, AbstractOdeSystemInformation::mVariableNames, AbstractOdeSystemInformation::mVariableUnits, and NAN.
| void CellwiseOdeSystemInformation< Mirams2010WntOdeSystem >::Initialise | ( | ) | [inline, virtual] |
Initialise the ODE system information.
This must be provided by subclasses.
Implements AbstractOdeSystemInformation.
Definition at line 149 of file Mirams2010WntOdeSystem.cpp.
References AbstractOdeSystemInformation::mInitialConditions, AbstractOdeSystemInformation::mInitialised, AbstractOdeSystemInformation::mVariableNames, and AbstractOdeSystemInformation::mVariableUnits.
| void CellwiseOdeSystemInformation< DeltaNotchOdeSystem >::Initialise | ( | ) | [inline, virtual] |
Initialise the ODE system information.
This must be provided by subclasses.
Implements AbstractOdeSystemInformation.
Definition at line 79 of file DeltaNotchOdeSystem.cpp.
References AbstractOdeSystemInformation::mInitialConditions, AbstractOdeSystemInformation::mInitialised, AbstractOdeSystemInformation::mVariableNames, and AbstractOdeSystemInformation::mVariableUnits.
| void CellwiseOdeSystemInformation< Alarcon2004OxygenBasedCellCycleOdeSystem >::Initialise | ( | ) | [inline, virtual] |
Initialise the ODE system information.
This must be provided by subclasses.
Implements AbstractOdeSystemInformation.
Definition at line 157 of file Alarcon2004OxygenBasedCellCycleOdeSystem.cpp.
References AbstractOdeSystemInformation::mInitialConditions, AbstractOdeSystemInformation::mInitialised, AbstractOdeSystemInformation::mVariableNames, AbstractOdeSystemInformation::mVariableUnits, and NAN.
| void CellwiseOdeSystemInformation< ODE_SYSTEM >::Initialise | ( | void | ) | [inline, protected, virtual] |
Generic implementation of Initialise, which does nothing.
Developers should specialise this method to their ODE system. For example,
template<> void CellwiseOdeSystemInformation<MyNewOdeSystem>::Initialise() { this->mVariableNames.push_back("Variable_1"); this->mVariableUnits.push_back("Units_1"); this->mInitialConditions.push_back(0.0);
this->mInitialised = true; }
Implements AbstractOdeSystemInformation.
Definition at line 86 of file CellwiseOdeSystemInformation.hpp.
Referenced by CellwiseOdeSystemInformation< ODE_SYSTEM >::CellwiseOdeSystemInformation().
The documentation for this class was generated from the following file:
- cell_based/src/odes/CellwiseOdeSystemInformation.hpp
