AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > Class Template Reference

#include <AbstractDynamicLinearPdeSolver.hpp>

Inherits AbstractLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >.

Inherited by LinearParabolicPdeSystemWithCoupledOdeSystemSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >.

Collaboration diagram for AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >:
Collaboration graph
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List of all members.

Public Member Functions

 AbstractDynamicLinearPdeSolver (AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *pMesh)
void SetTimes (double tStart, double tEnd)
void SetTimeStep (double dt)
void SetInitialCondition (Vec initialCondition)
Vec Solve ()
void SetMatrixIsNotAssembled ()
void SetTimeAdaptivityController (AbstractTimeAdaptivityController *pTimeAdaptivityController)
void SetOutputToVtk (bool output)
void SetOutputToParallelVtk (bool output)
void SetOutputToTxt (bool output)
void SetOutputDirectoryAndPrefix (std::string outputDirectory, std::string prefix)
void SetPrintingTimestepMultiple (unsigned multiple)

Protected Member Functions

void InitialiseHdf5Writer ()
void WriteOneStep (double time, Vec solution)

Protected Attributes

double mTstart
double mTend
bool mTimesSet
Vec mInitialCondition
bool mMatrixIsAssembled
bool mMatrixIsConstant
double mIdealTimeStep
double mLastWorkingTimeStep
AbstractTimeAdaptivityController * mpTimeAdaptivityController
bool mOutputToVtk
bool mOutputToParallelVtk
bool mOutputToTxt
std::string mOutputDirectory
std::string mFilenamePrefix
unsigned mPrintingTimestepMultiple
Hdf5DataWriter * mpHdf5Writer
std::vector< int > mVariableColumnIds

Friends

class TestSimpleLinearParabolicSolver

Detailed Description

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>
class AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >

Abstract class for dynamic linear PDE solves. This class defines the Solve() method. The concrete class should implement the SetupLinearSystem() method (defined in AbstractLinearPdeSolver), based on the PDE being solved and the numerical method.

Definition at line 49 of file AbstractDynamicLinearPdeSolver.hpp.

Constructor & Destructor Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>
AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::AbstractDynamicLinearPdeSolver ( AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *  pMesh  )  [inline]

Constructor.

Parameters:
pMesh the mesh

Definition at line 253 of file AbstractDynamicLinearPdeSolver.hpp.

Member Function Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>
void AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::InitialiseHdf5Writer (  )  [inline, protected]

Create and initialise the HDF5 writer. Called by Solve() if results are to be output.

Note: For now, writing variable names as 'Variable_0' etc; in the future, could allow user to specify units of time and names and units of dependent variables to be passed to the writer using DefineVariable() and DefineUnlimitedDimension()

Definition at line 214 of file AbstractDynamicLinearPdeSolver.hpp.

References Hdf5DataWriter::DefineFixedDimension(), Hdf5DataWriter::DefineUnlimitedDimension(), Hdf5DataWriter::DefineVariable(), Hdf5DataWriter::EndDefineMode(), EXCEPTION, AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mFilenamePrefix, AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mIdealTimeStep, AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mOutputDirectory, AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mpHdf5Writer, AbstractLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mpMesh, AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mPrintingTimestepMultiple, AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mTend, AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mTstart, and AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mVariableColumnIds.

Referenced by AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::Solve().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>
void AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::SetInitialCondition ( Vec  initialCondition  )  [inline]

Set the initial condition.

Note:
We do *not* take responsibility for destroying this vector - the caller must do so once the solver is no longer in use.
Parameters:
initialCondition the initial condition

Definition at line 298 of file AbstractDynamicLinearPdeSolver.hpp.

References AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mInitialCondition.

Referenced by CardiacElectroMechanicsProblem< DIM >::Solve(), and AdaptiveBidomainProblem::Solve().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>
void AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::SetMatrixIsNotAssembled (  )  [inline]

Tell the solver to assemble the matrix again next timestep.

Definition at line 473 of file AbstractDynamicLinearPdeSolver.hpp.

References AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mMatrixIsAssembled.

Referenced by CardiacElectroMechanicsProblem< DIM >::Solve().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>
void AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::SetOutputDirectoryAndPrefix ( std::string  outputDirectory,
std::string  prefix 
) [inline]
Parameters:
outputDirectory the output directory
prefix the filename prefix

Definition at line 505 of file AbstractDynamicLinearPdeSolver.hpp.

References AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mFilenamePrefix, and AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mOutputDirectory.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>
void AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::SetOutputToParallelVtk ( bool  output  )  [inline]
Parameters:
output whether to output to parallel VTK (.pvtu) file

Definition at line 493 of file AbstractDynamicLinearPdeSolver.hpp.

References AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mOutputToParallelVtk.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>
void AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::SetOutputToTxt ( bool  output  )  [inline]
Parameters:
output whether to output to a .txt format that is readable by Matlab

Definition at line 499 of file AbstractDynamicLinearPdeSolver.hpp.

References AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mOutputToTxt.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>
void AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::SetOutputToVtk ( bool  output  )  [inline]
Parameters:
output whether to output to VTK (.vtu) file

Definition at line 487 of file AbstractDynamicLinearPdeSolver.hpp.

References AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mOutputToVtk.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>
void AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::SetPrintingTimestepMultiple ( unsigned  multiple  )  [inline]
Parameters:
multiple the ratio of the number of actual timesteps to the number of timesteps at which results are output to HDF5 and other files.

Definition at line 512 of file AbstractDynamicLinearPdeSolver.hpp.

References AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mPrintingTimestepMultiple.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>
void AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::SetTimeAdaptivityController ( AbstractTimeAdaptivityController *  pTimeAdaptivityController  )  [inline]

Set a controller class which alters the dt used.

Parameters:
pTimeAdaptivityController the controller

Definition at line 479 of file AbstractDynamicLinearPdeSolver.hpp.

References AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mpTimeAdaptivityController.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>
void AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::SetTimes ( double  tStart,
double  tEnd 
) [inline]

Set the times to solve between.

Parameters:
tStart the start time
tEnd the end time

Definition at line 273 of file AbstractDynamicLinearPdeSolver.hpp.

References EXCEPTION, AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mTend, AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mTimesSet, and AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mTstart.

Referenced by CardiacElectroMechanicsProblem< DIM >::Solve(), AdaptiveBidomainProblem::Solve(), and LinearParabolicPdeSystemWithCoupledOdeSystemSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::SolveAndWriteResultsToFile().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>
void AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::SetTimeStep ( double  dt  )  [inline]

Set (or reset) the timestep to use.

Parameters:
dt timestep

Definition at line 287 of file AbstractDynamicLinearPdeSolver.hpp.

References EXCEPTION, and AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mIdealTimeStep.

Referenced by AdaptiveBidomainProblem::AdaptMesh(), BidomainProblem< DIM >::OnEndOfTimestep(), CardiacElectroMechanicsProblem< DIM >::Solve(), and AdaptiveBidomainProblem::Solve().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>
Vec AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::Solve (  )  [inline]

Dynamic solve method.

Definition at line 319 of file AbstractDynamicLinearPdeSolver.hpp.

References Hdf5DataWriter::AdvanceAlongUnlimitedDimension(), TimeStepper::AdvanceOneTimeStep(), GenericEventHandler< 16, HeartEventHandler >::BeginEvent(), GenericEventHandler< 16, HeartEventHandler >::EndEvent(), EXCEPTION, AbstractLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::FinaliseLinearSystem(), AbstractLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::FollowingSolveLinearSystem(), TimeStepper::GetNextTimeStep(), AbstractTimeAdaptivityController::GetNextTimeStep(), TimeStepper::GetTime(), TimeStepper::GetTotalTimeStepsTaken(), AbstractLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::InitialiseForSolve(), AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::InitialiseHdf5Writer(), TimeStepper::IsTimeAtEnd(), AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mFilenamePrefix, AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mIdealTimeStep, AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mInitialCondition, AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mLastWorkingTimeStep, AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mMatrixIsAssembled, AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mMatrixIsConstant, AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mOutputDirectory, AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mOutputToParallelVtk, AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mOutputToTxt, AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mOutputToVtk, AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mpHdf5Writer, AbstractLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mpLinearSystem, AbstractLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mpMesh, AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mPrintingTimestepMultiple, AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mpTimeAdaptivityController, AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mTend, AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mTimesSet, AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mTstart, NEVER_REACHED, AbstractLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::PrepareForSetupLinearSystem(), LinearSystem::ResetKspSolver(), TimeStepper::ResetTimeStep(), PdeSimulationTime::SetPdeTimeStep(), PdeSimulationTime::SetTime(), AbstractLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::SetupLinearSystem(), LinearSystem::Solve(), and AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::WriteOneStep().

Referenced by CardiacElectroMechanicsProblem< DIM >::Solve(), AdaptiveBidomainProblem::Solve(), and LinearParabolicPdeSystemWithCoupledOdeSystemSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::SolveAndWriteResultsToFile().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>
void AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::WriteOneStep ( double  time,
Vec  solution 
) [inline, protected]

Write one timestep of output data to HDF5 file.

Parameters:
time the time
solution the solution vector to write

Definition at line 305 of file AbstractDynamicLinearPdeSolver.hpp.

References AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mpHdf5Writer, AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mVariableColumnIds, Hdf5DataWriter::PutStripedVector(), Hdf5DataWriter::PutUnlimitedVariable(), and Hdf5DataWriter::PutVector().

Referenced by AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::Solve().

Member Data Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>
std::string AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mFilenamePrefix [protected]

Filename prefix for HDF5 and other files.

Definition at line 109 of file AbstractDynamicLinearPdeSolver.hpp.

Referenced by AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::InitialiseHdf5Writer(), AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::SetOutputDirectoryAndPrefix(), and AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::Solve().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>
double AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mIdealTimeStep [protected]

The timestep to use. This is either the last timestep passed in in SetTimeStep, or the last timestep suggested by the time adaptivity controller.

Definition at line 79 of file AbstractDynamicLinearPdeSolver.hpp.

Referenced by AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::InitialiseHdf5Writer(), LinearParabolicPdeSystemWithCoupledOdeSystemSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::SetSamplingTimeStep(), AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::SetTimeStep(), AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::Solve(), and LinearParabolicPdeSystemWithCoupledOdeSystemSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::SolveAndWriteResultsToFile().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>
Vec AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mInitialCondition [protected]

The initial condition vector.

Definition at line 64 of file AbstractDynamicLinearPdeSolver.hpp.

Referenced by AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::SetInitialCondition(), AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::Solve(), and LinearParabolicPdeSystemWithCoupledOdeSystemSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::SolveAndWriteResultsToFile().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>
double AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mLastWorkingTimeStep [protected]

The last actual timestep used.

Definition at line 82 of file AbstractDynamicLinearPdeSolver.hpp.

Referenced by AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::Solve().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>
bool AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mMatrixIsAssembled [protected]

Whether the matrix has been assembled for the current time step.

Definition at line 67 of file AbstractDynamicLinearPdeSolver.hpp.

Referenced by AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::SetMatrixIsNotAssembled(), and AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::Solve().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>
bool AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mMatrixIsConstant [protected]

Whether the matrix is constant in time (if so the system need not be assembled at each time step). Defaults to false.

Definition at line 73 of file AbstractDynamicLinearPdeSolver.hpp.

Referenced by AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::Solve().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>
std::string AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mOutputDirectory [protected]

Output directory (a subfolder of tmp/[USERNAME]/testoutput).

Definition at line 106 of file AbstractDynamicLinearPdeSolver.hpp.

Referenced by AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::InitialiseHdf5Writer(), LinearParabolicPdeSystemWithCoupledOdeSystemSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::SetOutputDirectory(), AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::SetOutputDirectoryAndPrefix(), AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::Solve(), LinearParabolicPdeSystemWithCoupledOdeSystemSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::SolveAndWriteResultsToFile(), and LinearParabolicPdeSystemWithCoupledOdeSystemSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::WriteVtkResultsToFile().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>
bool AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mOutputToParallelVtk [protected]

Flag to say if we need to output to VTK parallel (.pvtu). Defaults to false in the constructor.

Definition at line 97 of file AbstractDynamicLinearPdeSolver.hpp.

Referenced by AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::SetOutputToParallelVtk(), and AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::Solve().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>
bool AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mOutputToTxt [protected]

Flag to say if we need to output to a .txt format that is readable by Matlab. Defaults to false in the constructor.

Definition at line 103 of file AbstractDynamicLinearPdeSolver.hpp.

Referenced by AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::SetOutputToTxt(), and AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::Solve().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>
bool AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mOutputToVtk [protected]

Flag to say if we need to output to VTK. Defaults to false in the constructor.

Definition at line 91 of file AbstractDynamicLinearPdeSolver.hpp.

Referenced by AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::SetOutputToVtk(), and AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::Solve().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>
Hdf5DataWriter* AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mpHdf5Writer [protected]

The object used to write results to HDF5 file.

Definition at line 119 of file AbstractDynamicLinearPdeSolver.hpp.

Referenced by AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::InitialiseHdf5Writer(), AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::Solve(), and AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::WriteOneStep().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>
unsigned AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mPrintingTimestepMultiple [protected]

The ratio of the number of actual timesteps to the number of timesteps at which results are output to HDF5 and other files. Defaults to 1 in the constructor.

Definition at line 116 of file AbstractDynamicLinearPdeSolver.hpp.

Referenced by AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::InitialiseHdf5Writer(), AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::SetPrintingTimestepMultiple(), and AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::Solve().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>
AbstractTimeAdaptivityController* AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mpTimeAdaptivityController [protected]

A controller which determines what timestep to use (defaults to NULL).

Definition at line 85 of file AbstractDynamicLinearPdeSolver.hpp.

Referenced by AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::SetTimeAdaptivityController(), and AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::Solve().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>
double AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mTend [protected]

Simulation end time.

Definition at line 58 of file AbstractDynamicLinearPdeSolver.hpp.

Referenced by AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::InitialiseHdf5Writer(), AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::SetTimes(), AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::Solve(), and LinearParabolicPdeSystemWithCoupledOdeSystemSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::SolveAndWriteResultsToFile().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>
bool AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mTimesSet [protected]

Whether SetTimes has been called with suitable parameters.

Definition at line 61 of file AbstractDynamicLinearPdeSolver.hpp.

Referenced by AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::SetTimes(), AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::Solve(), and LinearParabolicPdeSystemWithCoupledOdeSystemSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::SolveAndWriteResultsToFile().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>
double AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mTstart [protected]

Simulation start time.

Definition at line 55 of file AbstractDynamicLinearPdeSolver.hpp.

Referenced by AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::InitialiseHdf5Writer(), AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::SetTimes(), AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::Solve(), and LinearParabolicPdeSystemWithCoupledOdeSystemSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::SolveAndWriteResultsToFile().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>
std::vector<int> AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mVariableColumnIds [protected]

List of variable column IDs as written to HDF5 file.

Definition at line 122 of file AbstractDynamicLinearPdeSolver.hpp.

Referenced by AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::InitialiseHdf5Writer(), and AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::WriteOneStep().

The documentation for this class was generated from the following file:
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