NodesOnlyMesh< SPACE_DIM > Class Template Reference

#include <NodesOnlyMesh.hpp>

Inherits MutableMesh< SPACE_DIM, SPACE_DIM >.

Collaboration diagram for NodesOnlyMesh< SPACE_DIM >:

Public Member Functions
void	ConstructNodesWithoutMesh (const std::vector< Node< SPACE_DIM > * > &rNodes)
void	ConstructNodesWithoutMesh (const AbstractMesh< SPACE_DIM, SPACE_DIM > &rGeneratingMesh)
void	Clear ()
double	GetCellRadius (unsigned index)
void	SetCellRadius (unsigned index, double radius)
void	ReMesh (NodeMap &rMap)
unsigned	AddNode (Node< SPACE_DIM > *pNewNode)
void	DeleteNode (unsigned index)
Private Member Functions
template<class Archive >
void	serialize (Archive &archive, const unsigned int version)
Private Attributes
std::vector< double >	mCellRadii
Friends
class	TestNodesOnlyMesh
class	boost::serialization::access

Detailed Description

template<unsigned SPACE_DIM>
class NodesOnlyMesh< SPACE_DIM >

Mesh class for storing lists of nodes (no elements). This inherits from MutableMesh because we want to be able to add and delete nodes.

Definition at line 42 of file NodesOnlyMesh.hpp.

Member Function Documentation

template<unsigned SPACE_DIM>

unsigned NodesOnlyMesh< SPACE_DIM >::AddNode ( Node< SPACE_DIM > * pNewNode ) [inline, virtual]

Overridden AddNode() method.

Parameters:

pNewNode

pointer to the new node

Reimplemented from MutableMesh< SPACE_DIM, SPACE_DIM >.

Definition at line 144 of file NodesOnlyMesh.cpp.

References NodesOnlyMesh< SPACE_DIM >::mCellRadii, and NodesOnlyMesh< SPACE_DIM >::SetCellRadius().

Referenced by NodeBasedCellPopulation< DIM >::AddNode().

template<unsigned SPACE_DIM>

void NodesOnlyMesh< SPACE_DIM >::Clear ( ) [inline, virtual]

Overridden Clear() method for NodesOnlyMesh. Clears mCellRadii in addition to calling Clear() on the parent class.

Reimplemented from MutableMesh< SPACE_DIM, SPACE_DIM >.

Definition at line 57 of file NodesOnlyMesh.cpp.

References NodesOnlyMesh< SPACE_DIM >::mCellRadii.

Referenced by NodesOnlyMesh< SPACE_DIM >::ConstructNodesWithoutMesh(), and NodesOnlyMesh< SPACE_DIM >::ReMesh().

template<unsigned SPACE_DIM>

void NodesOnlyMesh< SPACE_DIM >::ConstructNodesWithoutMesh ( const AbstractMesh< SPACE_DIM, SPACE_DIM > & rGeneratingMesh ) [inline]

A Helper method to enable you to construct a nodes-only mesh by stripping the nodes TetrahedralMesh, this calls the ConstructNodesWithoutMesh method with the nodes

If this is the only way of constructing a mesh of this type, then we can be certain that elements and boundary elements are always unused.

Parameters:

rGeneratingMesh

any mesh with nodes, used to generate the NodesOnlyMesh

Definition at line 51 of file NodesOnlyMesh.cpp.

References NodesOnlyMesh< SPACE_DIM >::ConstructNodesWithoutMesh(), and AbstractMesh< ELEMENT_DIM, SPACE_DIM >::mNodes.

template<unsigned SPACE_DIM>

void NodesOnlyMesh< SPACE_DIM >::ConstructNodesWithoutMesh ( const std::vector< Node< SPACE_DIM > * > & rNodes ) [inline]

Construct the mesh using only nodes. No mesh is created, but the nodes are stored. The original vector of nodes is deep-copied: new node objects are made with are independent of the pointers in the input so that they can be safely deleted.

If this is the only way of constructing a mesh of this type, then we can be certain that elements and boundary elements are always unused.

Parameters:

rNodes

a vector of pointers to nodes

Definition at line 33 of file NodesOnlyMesh.cpp.

References NodesOnlyMesh< SPACE_DIM >::Clear(), NodesOnlyMesh< SPACE_DIM >::mCellRadii, and AbstractMesh< ELEMENT_DIM, SPACE_DIM >::mNodes.

Referenced by NodesOnlyMesh< SPACE_DIM >::ConstructNodesWithoutMesh(), PottsBasedCellPopulation< DIM >::WriteVtkResultsToFile(), and MeshBasedCellPopulation< DIM >::WriteVtkResultsToFile().

template<unsigned SPACE_DIM>

void NodesOnlyMesh< SPACE_DIM >::DeleteNode ( unsigned index ) [inline, virtual]

Overridden DeleteNode() method.

Parameters:

index

is the index of the node to be deleted

Note: we do not need to update mCellRadii here, since if the node index is ever re-used when a new node is added, mCellRadii will be updated correctly.

Reimplemented from MutableMesh< SPACE_DIM, SPACE_DIM >.

Definition at line 160 of file NodesOnlyMesh.cpp.

References EXCEPTION, MutableMesh< SPACE_DIM, SPACE_DIM >::mDeletedNodeIndices, and AbstractMesh< ELEMENT_DIM, SPACE_DIM >::mNodes.

template<unsigned SPACE_DIM>

double NodesOnlyMesh< SPACE_DIM >::GetCellRadius ( unsigned index ) [inline]

Get the cell radius associated with a given node index.

Parameters:

index

the index of a node

Definition at line 67 of file NodesOnlyMesh.cpp.

References NodesOnlyMesh< SPACE_DIM >::mCellRadii.

Referenced by BuskeElasticForce< DIM >::CalculateForceBetweenNodes(), BuskeAdhesiveForce< DIM >::CalculateForceBetweenNodes(), NodeBasedCellPopulation< DIM >::GetNeighbouringNodeIndices(), NodeBasedCellPopulationWithBuskeUpdate< DIM >::UpdateNodeLocations(), NodeBasedCellPopulation< DIM >::WriteCellVolumeResultsToFile(), and NodeBasedCellPopulation< DIM >::WriteVtkResultsToFile().

template<unsigned SPACE_DIM>

void NodesOnlyMesh< SPACE_DIM >::ReMesh ( NodeMap & rMap ) [inline, virtual]

Overridden ReMesh() method.

Parameters:

rMap

a reference to a nodemap which should be created with the required number of nodes.

Reimplemented from MutableMesh< SPACE_DIM, SPACE_DIM >.

Definition at line 81 of file NodesOnlyMesh.cpp.

References NodesOnlyMesh< SPACE_DIM >::Clear(), AbstractMesh< ELEMENT_DIM, SPACE_DIM >::GetNumAllNodes(), AbstractMesh< ELEMENT_DIM, SPACE_DIM >::mBoundaryNodes, NodesOnlyMesh< SPACE_DIM >::mCellRadii, AbstractMesh< ELEMENT_DIM, SPACE_DIM >::mNodes, NodeMap::SetDeleted(), and NodeMap::SetNewIndex().

Referenced by NodeBasedCellPopulation< DIM >::Update().

template<unsigned SPACE_DIM>

template<class Archive >

void NodesOnlyMesh< SPACE_DIM >::serialize	(	Archive &	archive,
		const unsigned int	version
	)			`[inline, private]`

Archives the member variables of the object which have to be preserved during its lifetime.

Note that we must archive any member variables FIRST so that this method can call a ReMesh (to convert from TrianglesMeshReader input format into our native format).

Parameters: