AbstractCvodeCell Member List

This is the complete list of members for AbstractCvodeCell, including all inherited members.
AbstractCardiacCellInterface(boost::shared_ptr< AbstractIvpOdeSolver > pOdeSolver, unsigned voltageIndex, boost::shared_ptr< AbstractStimulusFunction > pIntracellularStimulus)AbstractCardiacCellInterface
AbstractCvodeCell(boost::shared_ptr< AbstractIvpOdeSolver > pSolver, unsigned numberOfStateVariables, unsigned voltageIndex, boost::shared_ptr< AbstractStimulusFunction > pIntracellularStimulus)AbstractCvodeCell
AbstractCvodeSystem(unsigned numberOfStateVariables)AbstractCvodeSystem
AbstractParameterisedSystem(unsigned numberOfStateVariables)AbstractParameterisedSystem< N_Vector >
AbstractUntemplatedParameterisedSystem(unsigned numberOfStateVariables)AbstractUntemplatedParameterisedSystem
boost::serialization::access classAbstractCardiacCellInterface [friend]
Compute(double tStart, double tEnd, double tSamp=0.0)AbstractCvodeCell [virtual]
ComputeDerivedQuantities(double time, const N_Vector &rState)AbstractParameterisedSystem< N_Vector > [virtual]
ComputeDerivedQuantitiesFromCurrentState(double time)AbstractParameterisedSystem< N_Vector >
ComputeExceptVoltage(double tStart, double tEnd)AbstractCvodeCell [virtual]
DumpState(const std::string &rMessage)AbstractParameterisedSystem< N_Vector > [protected]
DumpState(const std::string &rMessage, N_VectorY)AbstractParameterisedSystem< N_Vector > [protected]
EvaluateYDerivatives(realtype time, N_Vector y, N_Vector ydot)=0AbstractCvodeSystem [pure virtual]
GetAbsoluteTolerance()AbstractCvodeSystem
GetAnyVariable(unsigned index, double time=0.0, N_Vector *pDerivedQuantities=NULL)AbstractParameterisedSystem< N_Vector >
GetAnyVariable(const std::string &rName, double time=0.0, N_Vector *pDerivedQuantities=NULL)AbstractParameterisedSystem< N_Vector >
GetAnyVariableIndex(const std::string &rName) const AbstractUntemplatedParameterisedSystem
GetAnyVariableUnits(unsigned index) const AbstractUntemplatedParameterisedSystem
GetAnyVariableUnits(const std::string &rName) const AbstractUntemplatedParameterisedSystem
GetAttribute(const std::string &rName) const AbstractUntemplatedParameterisedSystem
GetDerivedQuantityIndex(const std::string &rName) const AbstractUntemplatedParameterisedSystem
GetDerivedQuantityUnits(unsigned index) const AbstractUntemplatedParameterisedSystem
GetIIonic(const std::vector< double > *pStateVariables=NULL)=0AbstractCardiacCellInterface [pure virtual]
GetInitialConditions() constAbstractParameterisedSystem< N_Vector >
GetIntracellularAreaStimulus(double time)AbstractCardiacCellInterface
GetIntracellularStimulus(double time)AbstractCardiacCellInterface
GetLastStepSize()AbstractCvodeSystem
GetLookupTableCollection()AbstractCardiacCellInterface [inline, virtual]
GetMaxSteps()AbstractCvodeSystem
GetNumberOfAttributes() const AbstractUntemplatedParameterisedSystem
GetNumberOfDerivedQuantities() const AbstractUntemplatedParameterisedSystem
GetNumberOfParameters() const AbstractUntemplatedParameterisedSystem
GetNumberOfStateVariables() const AbstractUntemplatedParameterisedSystem
GetParameter(unsigned index) constAbstractParameterisedSystem< N_Vector >
GetParameter(const std::string &rName) constAbstractParameterisedSystem< N_Vector >
GetParameterIndex(const std::string &rName) const AbstractUntemplatedParameterisedSystem
GetParameterUnits(unsigned index) const AbstractUntemplatedParameterisedSystem
GetRelativeTolerance()AbstractCvodeSystem
GetSolver() const AbstractCardiacCellInterface
GetStateVariable(unsigned index) constAbstractParameterisedSystem< N_Vector >
GetStateVariable(const std::string &rName) constAbstractParameterisedSystem< N_Vector >
GetStateVariableIndex(const std::string &rName) const AbstractUntemplatedParameterisedSystem
GetStateVariables()AbstractParameterisedSystem< N_Vector >
GetStateVariableUnits(unsigned index) const AbstractUntemplatedParameterisedSystem
GetStimulus(double time)AbstractCardiacCellInterface
GetStimulusFunction()AbstractCardiacCellInterface
GetStimulusFunction() const AbstractCardiacCellInterface
GetSystemInformation() const AbstractUntemplatedParameterisedSystem
GetSystemName() const AbstractUntemplatedParameterisedSystem
GetVoltage()AbstractCvodeCell [virtual]
GetVoltageIndex()AbstractCardiacCellInterface
HasAnyVariable(const std::string &rName) const AbstractUntemplatedParameterisedSystem
HasAttribute(const std::string &rName) const AbstractUntemplatedParameterisedSystem
HasCellMLDefaultStimulus()AbstractCardiacCellInterface
HasDerivedQuantity(const std::string &rName) const AbstractUntemplatedParameterisedSystem
HasParameter(const std::string &rName) const AbstractUntemplatedParameterisedSystem
HasStateVariable(const std::string &rName) const AbstractUntemplatedParameterisedSystem
Init()AbstractCvodeSystem [protected]
mAbsTolAbstractCvodeSystem [protected]
mHasDefaultStimulusFromCellMLAbstractCardiacCellInterface [protected]
mIsUsedInTissueAbstractCardiacCellInterface [protected]
mLastInternalStepSizeAbstractCvodeSystem [protected]
mMaxDtAbstractCvodeCell [private]
mMaxStepsAbstractCvodeSystem [protected]
mNumberOfStateVariablesAbstractUntemplatedParameterisedSystem [protected]
mParametersAbstractParameterisedSystem< N_Vector > [protected]
mpCvodeMemAbstractCvodeSystem [protected]
mpIntracellularStimulusAbstractCardiacCellInterface [protected]
mpOdeSolverAbstractCardiacCellInterface [protected]
mpSystemInfoAbstractUntemplatedParameterisedSystem [protected]
mRelTolAbstractCvodeSystem [protected]
mSetVoltageDerivativeToZeroAbstractCardiacCellInterface [protected]
mStateVariablesAbstractParameterisedSystem< N_Vector > [protected]
mUseAnalyticJacobianAbstractCvodeSystem [protected]
mVoltageIndexAbstractCardiacCellInterface [protected]
ResetSolver()AbstractCvodeSystem
ResetToInitialConditions()AbstractParameterisedSystem< N_Vector >
rGetDerivedQuantityNames() const AbstractUntemplatedParameterisedSystem
rGetDerivedQuantityUnits() const AbstractUntemplatedParameterisedSystem
rGetParameterNames() const AbstractUntemplatedParameterisedSystem
rGetParameterUnits() const AbstractUntemplatedParameterisedSystem
rGetStateVariableNames() const AbstractUntemplatedParameterisedSystem
rGetStateVariables()AbstractParameterisedSystem< N_Vector >
rGetStateVariableUnits() const AbstractUntemplatedParameterisedSystem
SetAnyVariable(unsigned index, double value)AbstractParameterisedSystem< N_Vector >
SetAnyVariable(const std::string &rName, double value)AbstractParameterisedSystem< N_Vector >
SetAutoReset(bool autoReset)AbstractCvodeSystem
SetDefaultInitialCondition(unsigned index, double initialCondition)AbstractParameterisedSystem< N_Vector >
SetDefaultInitialConditions(const N_Vector &rInitialConditions)AbstractParameterisedSystem< N_Vector >
SetIntracellularStimulusFunction(boost::shared_ptr< AbstractStimulusFunction > pStimulus)AbstractCardiacCellInterface
SetMaxSteps(long int numSteps)AbstractCvodeSystem
SetParameter(const std::string &rName, double value)AbstractParameterisedSystem< N_Vector >
SetParameter(unsigned index, double value)AbstractParameterisedSystem< N_Vector >
SetStateVariable(unsigned index, double newValue)AbstractParameterisedSystem< N_Vector >
SetStateVariable(const std::string &rName, double newValue)AbstractParameterisedSystem< N_Vector >
SetStateVariables(const N_Vector &rStateVariables)AbstractParameterisedSystem< N_Vector >
SetStimulusFunction(boost::shared_ptr< AbstractStimulusFunction > pStimulus)AbstractCardiacCellInterface
SetTimestep(double maxDt)AbstractCvodeCell [virtual]
SetTolerances(double relTol=1e-5, double absTol=1e-7)AbstractCvodeSystem
SetUsedInTissueSimulation(bool tissue=true)AbstractCardiacCellInterface
SetVoltage(double voltage)AbstractCvodeCell [virtual]
SetVoltageDerivativeToZero(bool clamp=true)AbstractCvodeCell [virtual]
Solve(realtype tStart, realtype tEnd, realtype maxDt, realtype tSamp)AbstractCvodeSystem
Solve(realtype tStart, realtype tEnd, realtype maxDt)AbstractCvodeSystem
SolveAndUpdateState(double tStart, double tEnd)AbstractCvodeCell [virtual]
UseCellMLDefaultStimulus()AbstractCardiacCellInterface [virtual]
VerifyStateVariables()AbstractParameterisedSystem< N_Vector > [inline, virtual]
~AbstractCardiacCellInterface()AbstractCardiacCellInterface [virtual]
~AbstractCvodeCell()AbstractCvodeCell [virtual]
~AbstractCvodeSystem()AbstractCvodeSystem [virtual]
~AbstractUntemplatedParameterisedSystem()AbstractUntemplatedParameterisedSystem [virtual]
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