AdaptiveBidomainProblem Member List

This is the complete list of members for AdaptiveBidomainProblem, including all inherited members.
AbstractCardiacProblem(AbstractCardiacCellFactory< ELEMENT_DIM, SPACE_DIM > *pCellFactory)AbstractCardiacProblem< DIM, DIM, 2 >
AbstractCardiacProblem()AbstractCardiacProblem< DIM, DIM, 2 >
AdaptiveBidomainProblem(AbstractCardiacCellFactory< 3 > *pCellFactory, bool hasBath=false)AdaptiveBidomainProblem
AdaptMesh()AdaptiveBidomainProblem
AddCurrentSolutionToAdaptiveMesh(Vec solution)AdaptiveBidomainProblem
AnalyseMeshForBath()BidomainProblem< 3 > [protected]
AtBeginningOfTimestep(double time)BidomainProblem< 3 > [virtual]
BidomainProblem(AbstractCardiacCellFactory< DIM > *pCellFactory, bool hasBath=false)BidomainProblem< 3 >
BidomainProblem()BidomainProblem< 3 >
boost::serialization::access classBidomainProblem< 3 > [friend]
CardiacElectroMechanicsProblem classAbstractCardiacProblem< DIM, DIM, 2 > [friend]
CloseFilesAndPostProcess()AbstractCardiacProblem< DIM, DIM, 2 >
CreateCardiacTissue()BidomainProblem< 3 > [protected, virtual]
CreateInitialCondition()BidomainProblem< 3 > [protected, virtual]
CreateSolver()BidomainProblem< 3 > [protected, virtual]
DefineExtraVariablesWriterColumns(bool extending)AbstractCardiacProblem< DIM, DIM, 2 >
DefineWriterColumns(bool extending)BidomainProblem< 3 > [virtual]
DoNotAdaptMesh()AdaptiveBidomainProblem
GetBidomainTissue()BidomainProblem< 3 >
GetCurrentTime()AbstractCardiacProblem< DIM, DIM, 2 >
GetDataReader()AbstractCardiacProblem< DIM, DIM, 2 >
GetGradation()AdaptiveBidomainProblem
GetHasBath()BidomainProblem< 3 > [virtual]
GetMaxEdgeLength()AdaptiveBidomainProblem
GetMaxMeshNodes()AdaptiveBidomainProblem
GetMinEdgeLength()AdaptiveBidomainProblem
GetNumAdaptSweeps()AdaptiveBidomainProblem
GetSigma()AdaptiveBidomainProblem
GetSolution()AbstractCardiacProblem< DIM, DIM, 2 >
GetSolutionDistributedVector()AbstractCardiacProblem< DIM, DIM, 2 >
GetTargetError()AdaptiveBidomainProblem
GetTissue()AbstractCardiacProblem< DIM, DIM, 2 >
Initialise()AbstractCardiacProblem< DIM, DIM, 2 >
InitialiseWriter()AbstractCardiacProblem< DIM, DIM, 2 >
InitializeSolutionOnAdaptedMesh(VtkMeshReader< 3, 3 > *reader)AdaptiveBidomainProblem
LoadExtraArchive(Archive &archive, unsigned version)AbstractCardiacProblem< DIM, DIM, 2 > [inline]
LoadExtraArchiveForBidomain(Archive &archive, unsigned version)BidomainProblem< 3 > [inline]
LoadSimulationFromVtuFile()AdaptiveBidomainProblem
mAllocatedMemoryForMeshAbstractCardiacProblem< DIM, DIM, 2 > [protected]
mCurrentTimeAbstractCardiacProblem< DIM, DIM, 2 > [protected]
mExtracelluarColumnIdBidomainProblem< 3 > [protected]
mExtraVariablesIdAbstractCardiacProblem< DIM, DIM, 2 > [protected]
mFixedExtracellularPotentialNodesBidomainProblem< 3 > [protected]
mHasBathBidomainProblem< 3 > [protected]
mInitializeFromVtuAdaptiveBidomainProblem [private]
mIsMeshAdaptingAdaptiveBidomainProblem [private]
mMeshFilenameAbstractCardiacProblem< DIM, DIM, 2 > [protected]
mNeumannStimulusDurationAdaptiveBidomainProblem [private]
mNeumannStimulusIndexAdaptiveBidomainProblem [private]
mNeumannStimulusLowerValueAdaptiveBidomainProblem [private]
mNeumannStimulusMagnitudeAdaptiveBidomainProblem [private]
mNeumannStimulusPeriodAdaptiveBidomainProblem [private]
mNeumannStimulusUpperValueAdaptiveBidomainProblem [private]
mNodeColumnIdAbstractCardiacProblem< DIM, DIM, 2 > [protected]
mNodesToOutputAbstractCardiacProblem< DIM, DIM, 2 > [protected]
mOutputDirectoryAdaptiveBidomainProblem [private]
mOutputFilenamePrefixAdaptiveBidomainProblem [private]
mpAdaptiveMeshAdaptiveBidomainProblem [private]
mpBidomainTissueBidomainProblem< 3 > [protected]
mpBoundaryConditionsContainerAbstractCardiacProblem< DIM, DIM, 2 > [protected]
mpCardiacTissueAbstractCardiacProblem< DIM, DIM, 2 > [protected]
mpCellFactoryAbstractCardiacProblem< DIM, DIM, 2 > [protected]
mpDefaultBoundaryConditionsContainerAbstractCardiacProblem< DIM, DIM, 2 > [protected]
mpElectrodesBidomainProblem< 3 > [protected]
mpMeshAbstractCardiacProblem< DIM, DIM, 2 > [protected]
mpNeumannStimulusAdaptiveBidomainProblem [private]
mpNeumannStimulusBoundaryConditionAdaptiveBidomainProblem [private]
mPrintOutputAbstractCardiacProblem< DIM, DIM, 2 > [protected]
mpSolverAdaptiveBidomainProblem [private]
mpTimeAdaptivityControllerAbstractCardiacProblem< DIM, DIM, 2 > [protected]
mpWriterAbstractCardiacProblem< DIM, DIM, 2 > [protected]
mRowForAverageOfPhiZeroedBidomainProblem< 3 > [protected]
mSolutionAbstractCardiacProblem< DIM, DIM, 2 > [protected]
mTimeColumnIdAbstractCardiacProblem< DIM, DIM, 2 > [protected]
mUseNeumannBoundaryConditionsAdaptiveBidomainProblem [private]
mVoltageColumnIdAbstractCardiacProblem< DIM, DIM, 2 > [protected]
mWriteInfoAbstractCardiacProblem< DIM, DIM, 2 > [protected]
OnEndOfTimestep(double time)BidomainProblem< 3 > [virtual]
PreSolveChecks()BidomainProblem< 3 > [virtual]
PrintOutput(bool rPrintOutput)AbstractCardiacProblem< DIM, DIM, 2 >
rGetMesh()AbstractCardiacProblem< DIM, DIM, 2 >
SetBoundaryConditionsContainer(BccType pBcc)AbstractCardiacProblem< DIM, DIM, 2 >
SetElectrodes()BidomainProblem< 3 > [virtual]
SetFixedExtracellularPotentialNodes(std::vector< unsigned > nodes)BidomainProblem< 3 >
SetMesh(AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *pMesh)AbstractCardiacProblem< DIM, DIM, 2 >
SetNeumannStimulusMagnitudeAndDuration(double magnitude, double duration, double period=DBL_MAX)AdaptiveBidomainProblem
SetNodeForAverageOfPhiZeroed(unsigned node)BidomainProblem< 3 >
SetNodesPerProcessorFilename(const std::string &rFilename)AbstractCardiacProblem< DIM, DIM, 2 >
SetOutputNodes(std::vector< unsigned > &rNodesToOutput)AbstractCardiacProblem< DIM, DIM, 2 >
SetUpAdditionalStoppingTimes(std::vector< double > &rAdditionalStoppingTimes)BidomainProblem< 3 > [virtual]
SetupNeumannBoundaryConditionOnMesh()AdaptiveBidomainProblem
SetUseTimeAdaptivityController(bool useAdaptivity, AbstractTimeAdaptivityController *pController=NULL)AbstractCardiacProblem< DIM, DIM, 2 >
SetWriteInfo(bool writeInfo=true)AbstractCardiacProblem< DIM, DIM, 2 >
Solve()AdaptiveBidomainProblem
TestAdaptiveBidomainProblem (defined in AdaptiveBidomainProblem)AdaptiveBidomainProblem [friend]
TestAdaptiveBidomainProblemNightly (defined in AdaptiveBidomainProblem)AdaptiveBidomainProblem [friend]
UseNeumannBoundaryCondition(unsigned index=0)AdaptiveBidomainProblem
WriteExtraVariablesOneStep()AbstractCardiacProblem< DIM, DIM, 2 >
WriteInfo(double time)BidomainProblem< 3 > [virtual]
WriteOneStep(double time, Vec voltageVec)BidomainProblem< 3 > [virtual]
~AbstractCardiacProblem()AbstractCardiacProblem< DIM, DIM, 2 > [virtual]
~AbstractUntemplatedCardiacProblem()AbstractUntemplatedCardiacProblem [inline, virtual]
~AdaptiveBidomainProblem()AdaptiveBidomainProblem
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