, including all inherited members.
| AbstractMesh() | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| AddElement(VertexElement< ELEMENT_DIM, SPACE_DIM > *pNewElement) | MutableVertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| AddNode(Node< SPACE_DIM > *pNewNode) | MutableVertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| boost::serialization::access class | MutableVertexMesh< ELEMENT_DIM, SPACE_DIM > | [friend] |
| BoundaryNodeIterator typedef | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
| CalculateBoundingBox() const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [inline, virtual] |
| CalculateMaximumContainingElementsPerProcess() const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| CalculateMomentsOfElement(unsigned index) | VertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline, virtual] |
| CheckForIntersections() | MutableVertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline, protected] |
| CheckForT1Swaps(VertexElementMap &rElementMap) | MutableVertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline, protected] |
| CheckForT2Swaps(VertexElementMap &rElementMap) | MutableVertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline, protected] |
| Clear() | MutableVertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline, virtual] |
| ClearLocationsOfT1Swaps() | MutableVertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| ClearLocationsOfT3Swaps() | MutableVertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| ConstructFromMeshReader(AbstractMeshReader< ELEMENT_DIM, SPACE_DIM > &rMeshReader) | VertexMesh< ELEMENT_DIM, SPACE_DIM > | |
| DeleteElementPriorToReMesh(unsigned index) | MutableVertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| DeleteNodePriorToReMesh(unsigned index) | MutableVertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| DivideEdge(Node< SPACE_DIM > *pNodeA, Node< SPACE_DIM > *pNodeB) | MutableVertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| DivideElement(VertexElement< ELEMENT_DIM, SPACE_DIM > *pElement, unsigned nodeAIndex, unsigned nodeBIndex, bool placeOriginalElementBelow=false) | MutableVertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline, protected] |
| DivideElementAlongGivenAxis(VertexElement< ELEMENT_DIM, SPACE_DIM > *pElement, c_vector< double, SPACE_DIM > axisOfDivision, bool placeOriginalElementBelow=false) | MutableVertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| DivideElementAlongShortAxis(VertexElement< ELEMENT_DIM, SPACE_DIM > *pElement, bool placeOriginalElementBelow=false) | MutableVertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| ElementIncludesPoint(const c_vector< double, SPACE_DIM > &rTestPoint, unsigned elementIndex) | VertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline, protected] |
| GenerateVerticesFromElementCircumcentres(TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > &rMesh) | VertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline, protected] |
| GetAreaGradientOfElementAtNode(VertexElement< ELEMENT_DIM, SPACE_DIM > *pElement, unsigned localIndex) | VertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetAreaOfFace(VertexElement< ELEMENT_DIM-1, SPACE_DIM > *pFace) | VertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline, virtual] |
| GetBoundaryNodeIteratorBegin() const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetBoundaryNodeIteratorEnd() const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetCellRearrangementRatio() const | MutableVertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetCellRearrangementThreshold() const | MutableVertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetCentroidOfElement(unsigned index) | VertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline, virtual] |
| GetCheckForInternalIntersections() const | MutableVertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetDelaunayNodeIndexCorrespondingToVoronoiElementIndex(unsigned elementIndex) | VertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetDistanceBetweenNodes(unsigned indexA, unsigned indexB) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetDistributedVectorFactory() | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [inline, virtual] |
| GetEdgeLength(unsigned elementIndex1, unsigned elementIndex2) | VertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetElement(unsigned index) const | VertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetElementIteratorBegin(bool skipDeletedElements=true) | VertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetElementIteratorEnd() | VertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetFace(unsigned index) const | VertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetLocalIndexForElementEdgeClosestToPoint(const c_vector< double, SPACE_DIM > &rTestPoint, unsigned elementIndex) | VertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline, protected] |
| GetLocationsOfT1Swaps() | MutableVertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetLocationsOfT3Swaps() | MutableVertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetMeshFileBaseName() const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetNeighbouringElementIndices(unsigned elementIndex) | VertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetNeighbouringNodeIndices(unsigned nodeIndex) | VertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetNeighbouringNodeNotAlsoInElement(unsigned nodeIndex, unsigned elemIndex) | VertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetNextEdgeGradientOfElementAtNode(VertexElement< ELEMENT_DIM, SPACE_DIM > *pElement, unsigned localIndex) | VertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetNode(unsigned index) const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetNodeFromPrePermutationIndex(unsigned index) const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetNodeIteratorBegin(bool skipDeletedNodes=true) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetNodeIteratorEnd() | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetNodeOrHaloNode(unsigned index) const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [inline, virtual] |
| GetNumAllElements() const | VertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetNumAllNodes() const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [inline, virtual] |
| GetNumBoundaryNodes() const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetNumElements() const | MutableVertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline, virtual] |
| GetNumFaces() const | VertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline, virtual] |
| GetNumNodes() const | MutableVertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline, virtual] |
| GetPerimeterGradientOfElementAtNode(VertexElement< ELEMENT_DIM, SPACE_DIM > *pElement, unsigned localIndex) | VertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetPreviousEdgeGradientOfElementAtNode(VertexElement< ELEMENT_DIM, SPACE_DIM > *pElement, unsigned localIndex) | VertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetShortAxisOfElement(unsigned index) | VertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetSurfaceAreaOfElement(unsigned index) | VertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline, virtual] |
| GetT2Threshold() const | MutableVertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetUnitNormalToFace(VertexElement< ELEMENT_DIM-1, SPACE_DIM > *pFace) | VertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetVectorFromAtoB(const c_vector< double, SPACE_DIM > &rLocationA, const c_vector< double, SPACE_DIM > &rLocationB) | VertexMesh< ELEMENT_DIM, SPACE_DIM > | [virtual] |
| GetVolumeOfElement(unsigned index) | VertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline, virtual] |
| GetVoronoiElementIndexCorrespondingToDelaunayNodeIndex(unsigned nodeIndex) | VertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetWidth(const unsigned &rDimension) const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [inline, virtual] |
| IdentifySwapType(Node< SPACE_DIM > *pNodeA, Node< SPACE_DIM > *pNodeB, VertexElementMap &rElementMap) | MutableVertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline, protected] |
| IsMeshChanging() const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| IsMeshOnDisk() const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| load(Archive &archive, const unsigned int version) | VertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline, protected] |
| mBoundaryNodes | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [protected] |
| mCellRearrangementRatio | MutableVertexMesh< ELEMENT_DIM, SPACE_DIM > | [protected] |
| mCellRearrangementThreshold | MutableVertexMesh< ELEMENT_DIM, SPACE_DIM > | [protected] |
| mCheckForInternalIntersections | MutableVertexMesh< ELEMENT_DIM, SPACE_DIM > | [protected] |
| mDeletedElementIndices | MutableVertexMesh< ELEMENT_DIM, SPACE_DIM > | [protected] |
| mDeletedNodeIndices | MutableVertexMesh< ELEMENT_DIM, SPACE_DIM > | [protected] |
| mElements | VertexMesh< ELEMENT_DIM, SPACE_DIM > | [protected] |
| mFaces | VertexMesh< ELEMENT_DIM, SPACE_DIM > | [protected] |
| mLocationsOfT1Swaps | MutableVertexMesh< ELEMENT_DIM, SPACE_DIM > | [protected] |
| mLocationsOfT3Swaps | MutableVertexMesh< ELEMENT_DIM, SPACE_DIM > | [protected] |
| mMeshChangesDuringSimulation | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [protected] |
| mMeshFileBaseName | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [protected] |
| mNodes | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [protected] |
| mNodesPermutation | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [protected] |
| mpDelaunayMesh | VertexMesh< ELEMENT_DIM, SPACE_DIM > | [protected] |
| mpDistributedVectorFactory | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [protected] |
| mT2Threshold | MutableVertexMesh< ELEMENT_DIM, SPACE_DIM > | [protected] |
| MutableVertexMesh(std::vector< Node< SPACE_DIM > * > nodes, std::vector< VertexElement< ELEMENT_DIM, SPACE_DIM > * > vertexElements, double cellRearrangementThreshold=0.01, double t2Threshold=0.001, double cellRearrangementRatio=1.5) | MutableVertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| MutableVertexMesh() | MutableVertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| mVoronoiElementIndexMap | VertexMesh< ELEMENT_DIM, SPACE_DIM > | [protected] |
| PerformIntersectionSwap(Node< SPACE_DIM > *pNode, unsigned elementIndex) | MutableVertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline, protected] |
| PerformNodeMerge(Node< SPACE_DIM > *pNodeA, Node< SPACE_DIM > *pNodeB) | MutableVertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline, protected] |
| PerformT1Swap(Node< SPACE_DIM > *pNodeA, Node< SPACE_DIM > *pNodeB, std::set< unsigned > &rElementsContainingNodes) | MutableVertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline, protected] |
| PerformT2Swap(VertexElement< ELEMENT_DIM, SPACE_DIM > &rElement) | MutableVertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline, protected] |
| PerformT3Swap(Node< SPACE_DIM > *pNode, unsigned elementIndex) | MutableVertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline, protected] |
| PerformVoidRemoval(Node< SPACE_DIM > *pNodeA, Node< SPACE_DIM > *pNodeB, Node< SPACE_DIM > *pNodeC) | MutableVertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline, protected] |
| PermuteNodes() | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [inline, virtual] |
| ReadNodesPerProcessorFile(const std::string &rNodesPerProcessorFile) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [inline, virtual] |
| RefreshMesh() | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [inline, virtual] |
| ReMesh(VertexElementMap &rElementMap) | MutableVertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| ReMesh() | MutableVertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| RemoveDeletedNodes() | MutableVertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| RemoveDeletedNodesAndElements(VertexElementMap &rElementMap) | MutableVertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| rGetNodePermutation() const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| Rotate(c_matrix< double, SPACE_DIM, SPACE_DIM > rotationMatrix) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| Rotate(c_vector< double, 3 > axis, double angle) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| Rotate(double theta) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| RotateX(const double theta) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| RotateY(const double theta) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| RotateZ(const double theta) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| save(Archive &archive, const unsigned int version) const | VertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline, protected] |
| Scale(const double xFactor=1.0, const double yFactor=1.0, const double zFactor=1.0) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [inline, virtual] |
| serialize(Archive &archive, const unsigned int version) | MutableVertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline, protected] |
| SetCellRearrangementRatio(double cellRearrangementRatio) | MutableVertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| SetCellRearrangementThreshold(double cellRearrangementThreshold) | MutableVertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| SetCheckForInternalIntersections(bool checkForInternalIntersections) | MutableVertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| SetDistributedVectorFactory(DistributedVectorFactory *pFactory) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [inline, virtual] |
| SetElementOwnerships() | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [inline, protected, virtual] |
| SetMeshHasChangedSinceLoading() | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| SetNode(unsigned nodeIndex, ChastePoint< SPACE_DIM > point) | MutableVertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline, virtual] |
| SetT2Threshold(double t2Threshold) | MutableVertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| SolveBoundaryElementMapping(unsigned index) const | VertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline, protected] |
| SolveElementMapping(unsigned index) const | VertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline, protected] |
| SolveNodeMapping(unsigned index) const | VertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline, protected, virtual] |
| TestMutableVertexMesh (defined in MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >) | MutableVertexMesh< ELEMENT_DIM, SPACE_DIM > | [friend] |
| TestMutableVertexMeshReMesh (defined in MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >) | MutableVertexMesh< ELEMENT_DIM, SPACE_DIM > | [friend] |
| Translate(const c_vector< double, SPACE_DIM > &rDisplacement) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| Translate(const double xMovement=0.0, const double yMovement=0.0, const double zMovement=0.0) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| VertexMesh(std::vector< Node< SPACE_DIM > * > nodes, std::vector< VertexElement< ELEMENT_DIM, SPACE_DIM > * > vertexElements) | VertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| VertexMesh(std::vector< Node< SPACE_DIM > * > nodes, std::vector< VertexElement< ELEMENT_DIM-1, SPACE_DIM > * > faces, std::vector< VertexElement< ELEMENT_DIM, SPACE_DIM > * > vertexElements) | VertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| VertexMesh(TetrahedralMesh< 2, 2 > &rMesh, bool isPeriodic=false) | VertexMesh< ELEMENT_DIM, SPACE_DIM > | |
| VertexMesh(TetrahedralMesh< 3, 3 > &rMesh) | VertexMesh< ELEMENT_DIM, SPACE_DIM > | |
| VertexMesh() | VertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| VertexMesh(TetrahedralMesh< 2, 2 > &rMesh, bool isPeriodic) | VertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| VertexMesh(TetrahedralMesh< 3, 3 > &rMesh) | VertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| ~AbstractMesh() | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [inline, virtual] |
| ~MutableVertexMesh() | MutableVertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline, virtual] |
| ~VertexMesh() | VertexMesh< ELEMENT_DIM, SPACE_DIM > | [inline, virtual] |
