Chaste Release::3.1
AbstractCardiacCell Member List
This is the complete list of members for AbstractCardiacCell, including all inherited members.
AbstractCardiacCell(boost::shared_ptr< AbstractIvpOdeSolver > pOdeSolver, unsigned numberOfStateVariables, unsigned voltageIndex, boost::shared_ptr< AbstractStimulusFunction > pIntracellularStimulus)AbstractCardiacCell
AbstractCardiacCellInterface(boost::shared_ptr< AbstractIvpOdeSolver > pOdeSolver, unsigned voltageIndex, boost::shared_ptr< AbstractStimulusFunction > pIntracellularStimulus)AbstractCardiacCellInterface
AbstractOdeSystem(unsigned numberOfStateVariables)AbstractOdeSystem
AbstractParameterisedSystem(unsigned numberOfStateVariables)AbstractParameterisedSystem< std::vector< double > >
AbstractUntemplatedParameterisedSystem(unsigned numberOfStateVariables)AbstractUntemplatedParameterisedSystem
AdjustOutOfRangeSlowValues(std::vector< double > &rSlowValues)AbstractCardiacCell [virtual]
boost::serialization::access classAbstractCardiacCell [friend]
CalculateRootFunction(double time, const std::vector< double > &rY)AbstractOdeSystem [virtual]
CalculateStoppingEvent(double time, const std::vector< double > &rY)AbstractOdeSystem [virtual]
CheckForArchiveFix()AbstractCardiacCell [private]
CheckParametersOnLoad(const std::vector< double > &rParameters, const std::vector< std::string > &rParameterNames)AbstractParameterisedSystem< std::vector< double > > [protected]
Compute(double tStart, double tEnd, double tSamp=0.0)AbstractCardiacCell [virtual]
ComputeDerivedQuantities(double time, const std::vector< double > &rState)AbstractParameterisedSystem< std::vector< double > > [virtual]
ComputeDerivedQuantitiesFromCurrentState(double time)AbstractParameterisedSystem< std::vector< double > >
ComputeExceptVoltage(double tStart, double tEnd)AbstractCardiacCell [virtual]
DumpState(const std::string &rMessage)AbstractParameterisedSystem< std::vector< double > > [protected]
DumpState(const std::string &rMessage, std::vector< double >Y)AbstractParameterisedSystem< std::vector< double > > [protected]
EvaluateYDerivatives(double time, const std::vector< double > &rY, std::vector< double > &rDY)=0AbstractOdeSystem [pure virtual]
GetAnyVariable(const std::string &rName, double time=0.0)AbstractCardiacCell [virtual]
AbstractOdeSystem::GetAnyVariable(unsigned index, double time=0.0, std::vector< double > *pDerivedQuantities=NULL)AbstractParameterisedSystem< std::vector< double > >
AbstractOdeSystem::GetAnyVariable(const std::string &rName, double time=0.0, std::vector< double > *pDerivedQuantities=NULL)AbstractParameterisedSystem< std::vector< double > >
GetAnyVariableIndex(const std::string &rName) const AbstractUntemplatedParameterisedSystem
GetAnyVariableUnits(unsigned index) const AbstractUntemplatedParameterisedSystem
GetAnyVariableUnits(const std::string &rName) const AbstractUntemplatedParameterisedSystem
GetAttribute(const std::string &rName) const AbstractUntemplatedParameterisedSystem
GetDerivedQuantityIndex(const std::string &rName) const AbstractUntemplatedParameterisedSystem
GetDerivedQuantityUnits(unsigned index) const AbstractUntemplatedParameterisedSystem
GetIIonic(const std::vector< double > *pStateVariables=NULL)=0AbstractCardiacCellInterface [pure virtual]
GetInitialConditions() constAbstractParameterisedSystem< std::vector< double > >
GetIntracellularAreaStimulus(double time)AbstractCardiacCellInterface
GetIntracellularCalciumConcentration()AbstractCardiacCellInterface [virtual]
GetIntracellularStimulus(double time)AbstractCardiacCellInterface
GetLookupTableCollection()AbstractCardiacCellInterface [inline, virtual]
GetNumberOfAttributes() const AbstractUntemplatedParameterisedSystem
GetNumberOfDerivedQuantities() const AbstractUntemplatedParameterisedSystem
GetNumberOfParameters() const AbstractCardiacCell [virtual]
GetNumberOfStateVariables() const AbstractCardiacCell [virtual]
GetNumSlowValues()AbstractCardiacCell [virtual]
GetParameter(const std::string &rParameterName)AbstractCardiacCell [virtual]
GetParameter(unsigned parameterIndex)AbstractCardiacCell [virtual]
AbstractOdeSystem::GetParameter(unsigned index) constAbstractParameterisedSystem< std::vector< double > >
AbstractOdeSystem::GetParameter(const std::string &rName) constAbstractParameterisedSystem< std::vector< double > >
GetParameterIndex(const std::string &rName) const AbstractUntemplatedParameterisedSystem
GetParameterUnits(unsigned index) const AbstractUntemplatedParameterisedSystem
GetSlowValues(std::vector< double > &rSlowValues)AbstractCardiacCell [virtual]
GetSolver() const AbstractCardiacCellInterface
GetStateVariable(unsigned index) constAbstractParameterisedSystem< std::vector< double > >
GetStateVariable(const std::string &rName) constAbstractParameterisedSystem< std::vector< double > >
GetStateVariableIndex(const std::string &rName) const AbstractUntemplatedParameterisedSystem
GetStateVariables()AbstractParameterisedSystem< std::vector< double > >
GetStateVariableUnits(unsigned index) const AbstractUntemplatedParameterisedSystem
GetStdVecStateVariables()AbstractCardiacCell [virtual]
GetStimulus(double time)AbstractCardiacCellInterface
GetStimulusFunction()AbstractCardiacCellInterface
GetStimulusFunction() const AbstractCardiacCellInterface
GetSystemInformation() const AbstractUntemplatedParameterisedSystem
GetSystemName() const AbstractUntemplatedParameterisedSystem
GetUseAnalyticJacobian()AbstractOdeSystem
GetVoltage()AbstractCardiacCell [virtual]
GetVoltageIndex()AbstractCardiacCellInterface
HasAnyVariable(const std::string &rName) const AbstractUntemplatedParameterisedSystem
HasAttribute(const std::string &rName) const AbstractUntemplatedParameterisedSystem
HasCellMLDefaultStimulus()AbstractCardiacCellInterface
HasDerivedQuantity(const std::string &rName) const AbstractUntemplatedParameterisedSystem
HasParameter(const std::string &rName) const AbstractUntemplatedParameterisedSystem
HasStateVariable(const std::string &rName) const AbstractUntemplatedParameterisedSystem
Init()AbstractCardiacCell
IsFastOnly()AbstractCardiacCell [virtual]
mDtAbstractCardiacCell [protected]
mFixedVoltageAbstractCardiacCellInterface [protected]
mHasDefaultStimulusFromCellMLAbstractCardiacCellInterface [protected]
mIsUsedInTissueAbstractCardiacCellInterface [protected]
mNumberOfStateVariablesAbstractUntemplatedParameterisedSystem [protected]
mParametersAbstractParameterisedSystem< std::vector< double > > [protected]
mpIntracellularStimulusAbstractCardiacCellInterface [protected]
mpOdeSolverAbstractCardiacCellInterface [protected]
mpSystemInfoAbstractUntemplatedParameterisedSystem [protected]
mSetVoltageDerivativeToZeroAbstractCardiacCellInterface [protected]
mStateVariablesAbstractParameterisedSystem< std::vector< double > > [protected]
mUseAnalyticJacobianAbstractOdeSystem [protected]
mVoltageIndexAbstractCardiacCellInterface [protected]
ResetToInitialConditions()AbstractParameterisedSystem< std::vector< double > >
rGetConstStateVariables() const AbstractOdeSystem
rGetDerivedQuantityNames() const AbstractUntemplatedParameterisedSystem
rGetDerivedQuantityUnits() const AbstractUntemplatedParameterisedSystem
rGetParameterNames() const AbstractUntemplatedParameterisedSystem
rGetParameterUnits() const AbstractUntemplatedParameterisedSystem
rGetStateVariableNames() const AbstractCardiacCell [virtual]
rGetStateVariables()AbstractParameterisedSystem< std::vector< double > >
rGetStateVariableUnits() const AbstractUntemplatedParameterisedSystem
serialize(Archive &archive, const unsigned int version)AbstractCardiacCell [inline, private]
SetAnyVariable(unsigned index, double value)AbstractParameterisedSystem< std::vector< double > >
SetAnyVariable(const std::string &rName, double value)AbstractParameterisedSystem< std::vector< double > >
SetDefaultInitialCondition(unsigned index, double initialCondition)AbstractParameterisedSystem< std::vector< double > >
SetDefaultInitialConditions(const std::vector< double > &rInitialConditions)AbstractParameterisedSystem< std::vector< double > >
SetFixedVoltage(double voltage)AbstractCardiacCellInterface
SetIntracellularStimulusFunction(boost::shared_ptr< AbstractStimulusFunction > pStimulus)AbstractCardiacCellInterface
SetParameter(const std::string &rParameterName, double value)AbstractCardiacCell [virtual]
SetParameter(unsigned parameterIndex, double value)AbstractCardiacCell [virtual]
SetSlowValues(const std::vector< double > &rSlowValues)AbstractCardiacCell [virtual]
SetState(CellModelState state)AbstractCardiacCell [virtual]
SetStateVariable(unsigned index, double newValue)AbstractCardiacCell [virtual]
SetStateVariable(const std::string &rName, double newValue)AbstractCardiacCell [virtual]
SetStateVariables(const std::vector< double > &rVariables)AbstractCardiacCell [virtual]
SetStimulusFunction(boost::shared_ptr< AbstractStimulusFunction > pStimulus)AbstractCardiacCellInterface
SetStretch(double stretch)AbstractCardiacCellInterface [inline, virtual]
SetTimestep(double dt)AbstractCardiacCell [virtual]
SetUsedInTissueSimulation(bool tissue=true)AbstractCardiacCellInterface
SetVoltage(double voltage)AbstractCardiacCell [virtual]
SetVoltageDerivativeToZero(bool clamp=true)AbstractCardiacCellInterface [virtual]
SolveAndUpdateState(double tStart, double tEnd)AbstractCardiacCell [virtual]
UseCellMLDefaultStimulus()AbstractCardiacCellInterface [virtual]
VerifyStateVariables()AbstractParameterisedSystem< std::vector< double > > [inline, virtual]
~AbstractCardiacCell()AbstractCardiacCell [virtual]
~AbstractCardiacCellInterface()AbstractCardiacCellInterface [virtual]
~AbstractOdeSystem()AbstractOdeSystem [virtual]
~AbstractUntemplatedParameterisedSystem()AbstractUntemplatedParameterisedSystem [virtual]