, including all inherited members.
AbstractCellBasedSimulation(AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > &rCellPopulation, bool deleteCellPopulationInDestructor=false, bool initialiseCells=true) | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | |
AddCellKiller(boost::shared_ptr< AbstractCellKiller< SPACE_DIM > > pCellKiller) | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | |
boost::serialization::access class | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | [friend] |
CalculateCellDivisionVector(CellPtr pParentCell)=0 | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | [protected, pure virtual] |
DoCellBirth() | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | [protected, virtual] |
DoCellRemoval() | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | [protected] |
GetCellBasedPdeHandler() | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | |
GetDt() | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | |
GetIdentifier() const | Identifiable | |
GetNodeLocation(const unsigned &rNodeIndex) | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | |
GetNumBirths() | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | |
GetNumDeaths() | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | |
GetOutputDirectory() | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | |
GetOutputDivisionLocations() | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | |
mCellKillers | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | [protected] |
mDeleteCellPopulationInDestructor | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | [protected] |
mDt | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | [protected] |
mEndTime | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | [protected] |
mInitialiseCells | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | [protected] |
mNoBirth | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | [protected] |
mNumBirths | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | [protected] |
mNumDeaths | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | [protected] |
mOutputDirectory | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | [protected] |
mOutputDivisionLocations | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | [protected] |
mpCellBasedPdeHandler | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | [protected] |
mpDivisionLocationFile | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | [protected] |
mpVizSetupFile | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | [protected] |
mrCellPopulation | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | [protected] |
mSamplingTimestepMultiple | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | [protected] |
mSimulationOutputDirectory | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | [protected] |
mUpdateCellPopulation | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | [protected] |
OutputAdditionalSimulationSetup(out_stream &rParamsFile) | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | [inline, protected, virtual] |
OutputSimulationParameters(out_stream &rParamsFile)=0 | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | [pure virtual] |
OutputSimulationSetup() | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | [protected] |
RemoveAllCellKillers() | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | |
rGetCellPopulation() | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | |
rGetCellPopulation() const | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | |
serialize(Archive &archive, const unsigned int version) | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | [inline, private] |
SetCellBasedPdeHandler(CellBasedPdeHandler< SPACE_DIM > *pCellBasedPdeHandler) | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | |
SetDt(double dt) | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | |
SetEndTime(double endTime) | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | |
SetNoBirth(bool noBirth) | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | |
SetOutputDirectory(std::string outputDirectory) | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | |
SetOutputDivisionLocations(bool outputDivisionLocations) | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | |
SetSamplingTimestepMultiple(unsigned samplingTimestepMultiple) | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | |
SetUpdateCellPopulationRule(bool updateCellPopulation) | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | |
SetupSolve() | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | [inline, protected, virtual] |
Solve() | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | |
StoppingEventHasOccurred() | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | [protected, virtual] |
TestCryptSimulation2d (defined in AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM >) | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | [friend] |
TestOffLatticeSimulation (defined in AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM >) | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | [friend] |
TestOffLatticeSimulation3d (defined in AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM >) | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | [friend] |
UpdateAtEndOfSolve() | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | [inline, protected, virtual] |
UpdateAtEndOfTimeStep() | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | [inline, protected, virtual] |
UpdateCellLocationsAndTopology()=0 | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | [protected, pure virtual] |
UpdateCellPopulation() | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | [protected, virtual] |
WriteVisualizerSetupFile() | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | [inline, protected, virtual] |
~AbstractCellBasedSimulation() | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | [virtual] |
~Identifiable() | Identifiable | [virtual] |