, including all inherited members.
| AbstractCellPopulation(AbstractMesh< ELEMENT_DIM, ELEMENT_DIM > &rMesh) | AbstractCellPopulation< DIM > | [protected] |
| AbstractCellPopulation(AbstractMesh< ELEMENT_DIM, ELEMENT_DIM > &rMesh, std::vector< CellPtr > &rCells, const std::vector< unsigned > locationIndices=std::vector< unsigned >()) | AbstractCellPopulation< DIM > | |
| AbstractOnLatticeCellPopulation(AbstractMesh< DIM, DIM > &rMesh) | AbstractOnLatticeCellPopulation< DIM > | [protected] |
| AbstractOnLatticeCellPopulation(AbstractMesh< DIM, DIM > &rMesh, std::vector< CellPtr > &rCells, const std::vector< unsigned > locationIndices=std::vector< unsigned >(), bool deleteMesh=false) | AbstractOnLatticeCellPopulation< DIM > | |
| AddCell(CellPtr pNewCell, const c_vector< double, DIM > &rCellDivisionVector, CellPtr pParentCell=CellPtr()) | MultipleCaBasedCellPopulation< DIM > | |
| AbstractOnLatticeCellPopulation::AddCell(CellPtr pNewCell, const c_vector< double, ELEMENT_DIM > &rCellDivisionVector, CellPtr pParentCell=CellPtr())=0 | AbstractCellPopulation< DIM > | [pure virtual] |
| AddCellUsingLocationIndex(unsigned index, CellPtr pCell) | MultipleCaBasedCellPopulation< DIM > | [virtual] |
| AddUpdateRule(boost::shared_ptr< AbstractMultipleCaUpdateRule< DIM > > pUpdateRule) | MultipleCaBasedCellPopulation< DIM > | |
| Begin() | AbstractCellPopulation< DIM > | |
| boost::serialization::access class | MultipleCaBasedCellPopulation< DIM > | [friend] |
| CloseOutputFiles() | MultipleCaBasedCellPopulation< DIM > | [virtual] |
| CreateOutputFiles(const std::string &rDirectory, bool cleanOutputDirectory) | MultipleCaBasedCellPopulation< DIM > | [virtual] |
| End() | AbstractCellPopulation< DIM > | |
| GenerateCellResults(CellPtr pCell, std::vector< unsigned > &rCellProliferativeTypeCounter, std::vector< unsigned > &rCellCyclePhaseCounter) | AbstractCellPopulation< DIM > | [virtual] |
| GenerateCellResultsAndWriteToFiles() | MultipleCaBasedCellPopulation< DIM > | [virtual] |
| GetCellAncestors() | AbstractCellPopulation< DIM > | |
| GetCellMutationStateCount() | AbstractCellPopulation< DIM > | |
| GetCellPropertyRegistry() | AbstractCellPopulation< DIM > | |
| GetCellsUsingLocationIndex(unsigned index) | AbstractCellPopulation< DIM > | |
| GetCellUsingLocationIndex(unsigned index) | AbstractCellPopulation< DIM > | |
| GetCentroidOfCellPopulation() | AbstractCellPopulation< DIM > | |
| GetIdentifier() const | Identifiable | |
| GetIterateRandomlyOverUpdateRuleCollection() | AbstractOnLatticeCellPopulation< DIM > | |
| GetLocationIndexUsingCell(CellPtr pCell) | AbstractCellPopulation< DIM > | |
| GetLocationOfCellCentre(CellPtr pCell) | MultipleCaBasedCellPopulation< DIM > | [virtual] |
| GetNeighbouringNodeIndices(unsigned index) | MultipleCaBasedCellPopulation< DIM > | [virtual] |
| GetNode(unsigned index) | MultipleCaBasedCellPopulation< DIM > | [virtual] |
| GetNodeCorrespondingToCell(CellPtr pCell) | MultipleCaBasedCellPopulation< DIM > | |
| GetNumNodes() | MultipleCaBasedCellPopulation< DIM > | [virtual] |
| GetNumRealCells() | AbstractCellPopulation< DIM > | |
| GetOutputCellAges() | AbstractCellPopulation< DIM > | |
| GetOutputCellAncestors() | AbstractCellPopulation< DIM > | |
| GetOutputCellCyclePhases() | AbstractCellPopulation< DIM > | |
| GetOutputCellIdData() | AbstractCellPopulation< DIM > | |
| GetOutputCellMutationStates() | AbstractCellPopulation< DIM > | |
| GetOutputCellProliferativeTypes() | AbstractCellPopulation< DIM > | |
| GetOutputCellVariables() | AbstractCellPopulation< DIM > | |
| GetOutputCellVolumes() | AbstractCellPopulation< DIM > | |
| GetSizeOfCellPopulation() | AbstractCellPopulation< DIM > | |
| GetUpdateNodesInRandomOrder() | AbstractOnLatticeCellPopulation< DIM > | |
| GetVolumeOfCell(CellPtr pCell) | MultipleCaBasedCellPopulation< DIM > | [virtual] |
| GetWidth(const unsigned &rDimension) | MultipleCaBasedCellPopulation< DIM > | [virtual] |
| InitialiseCells() | AbstractCellPopulation< DIM > | |
| IsCellAssociatedWithADeletedLocation(CellPtr pCell) | MultipleCaBasedCellPopulation< DIM > | [virtual] |
| IsCellAttachedToLocationIndex(unsigned index) | AbstractCellPopulation< DIM > | |
| IsSiteAvailable(unsigned index) | MultipleCaBasedCellPopulation< DIM > | |
| mAvailableSpaces | MultipleCaBasedCellPopulation< DIM > | [private] |
| mCellCyclePhaseCount | AbstractCellPopulation< DIM > | [protected] |
| mCellLocationMap | AbstractCellPopulation< DIM > | [protected] |
| mCellProliferativeTypeCount | AbstractCellPopulation< DIM > | [protected] |
| mCells | AbstractCellPopulation< DIM > | [protected] |
| mCentroid | AbstractCellPopulation< DIM > | [protected] |
| mDeleteMesh | AbstractOnLatticeCellPopulation< DIM > | [protected] |
| mDirPath | AbstractCellPopulation< DIM > | [protected] |
| mIterateRandomlyOverUpdateRuleCollection | AbstractOnLatticeCellPopulation< DIM > | [protected] |
| mLatticeCarryingCapacity | MultipleCaBasedCellPopulation< DIM > | [private] |
| mLocationCellMap | AbstractCellPopulation< DIM > | [protected] |
| mOutputCellAges | AbstractCellPopulation< DIM > | [protected] |
| mOutputCellAncestors | AbstractCellPopulation< DIM > | [protected] |
| mOutputCellCyclePhases | AbstractCellPopulation< DIM > | [protected] |
| mOutputCellIdData | AbstractCellPopulation< DIM > | [protected] |
| mOutputCellMutationStates | AbstractCellPopulation< DIM > | [protected] |
| mOutputCellProliferativeTypes | AbstractCellPopulation< DIM > | [protected] |
| mOutputCellVariables | AbstractCellPopulation< DIM > | [protected] |
| mOutputCellVolumes | AbstractCellPopulation< DIM > | [protected] |
| MoveCellInLocationMap(CellPtr pCell, unsigned old_index, unsigned new_index) | AbstractCellPopulation< DIM > | |
| mpCellAgesFile | AbstractCellPopulation< DIM > | [protected] |
| mpCellCyclePhasesFile | AbstractCellPopulation< DIM > | [protected] |
| mpCellIdFile | AbstractCellPopulation< DIM > | [protected] |
| mpCellMutationStatesFile | AbstractCellPopulation< DIM > | [protected] |
| mpCellProliferativeTypesFile | AbstractCellPopulation< DIM > | [protected] |
| mpCellPropertyRegistry | AbstractCellPopulation< DIM > | [protected] |
| mpCellVariablesFile | AbstractCellPopulation< DIM > | [protected] |
| mpCellVolumesFile | AbstractCellPopulation< DIM > | [protected] |
| mpVizBoundaryNodesFile | AbstractCellPopulation< DIM > | [protected] |
| mpVizCellAncestorsFile | AbstractCellPopulation< DIM > | [protected] |
| mpVizCellProliferativePhasesFile | AbstractCellPopulation< DIM > | [protected] |
| mpVizCellProliferativeTypesFile | AbstractCellPopulation< DIM > | [protected] |
| mpVizLocationsFile | MultipleCaBasedCellPopulation< DIM > | [private] |
| mpVizNodesFile | AbstractCellPopulation< DIM > | [protected] |
| mpVtkMetaFile | AbstractCellPopulation< DIM > | [protected] |
| mrMesh | AbstractCellPopulation< DIM > | [protected] |
| MultipleCaBasedCellPopulation(PottsMesh< DIM > &rMesh, std::vector< CellPtr > &rCells, const std::vector< unsigned > locationIndices=std::vector< unsigned >(), unsigned latticeCarryingCapacity=1u, bool deleteMesh=false, bool validate=false) | MultipleCaBasedCellPopulation< DIM > | |
| MultipleCaBasedCellPopulation(PottsMesh< DIM > &rMesh) | MultipleCaBasedCellPopulation< DIM > | |
| mUpdateNodesInRandomOrder | AbstractOnLatticeCellPopulation< DIM > | [protected] |
| mUpdateRuleCollection | MultipleCaBasedCellPopulation< DIM > | [private] |
| OutputCellPopulationInfo(out_stream &rParamsFile) | AbstractCellPopulation< DIM > | |
| OutputCellPopulationParameters(out_stream &rParamsFile) | MultipleCaBasedCellPopulation< DIM > | [virtual] |
| RemoveAllUpdateRules() | MultipleCaBasedCellPopulation< DIM > | |
| RemoveCellUsingLocationIndex(unsigned index, CellPtr pCell) | MultipleCaBasedCellPopulation< DIM > | [virtual] |
| RemoveDeadCells() | MultipleCaBasedCellPopulation< DIM > | [virtual] |
| rGetAvailableSpaces() | MultipleCaBasedCellPopulation< DIM > | |
| rGetCellCyclePhaseCount() const | AbstractCellPopulation< DIM > | |
| rGetCellProliferativeTypeCount() const | AbstractCellPopulation< DIM > | |
| rGetCells() | AbstractCellPopulation< DIM > | |
| rGetMesh() | MultipleCaBasedCellPopulation< DIM > | |
| rGetMesh() const | MultipleCaBasedCellPopulation< DIM > | |
| rGetUpdateRuleCollection() const | MultipleCaBasedCellPopulation< DIM > | |
| serialize(Archive &archive, const unsigned int version) | MultipleCaBasedCellPopulation< DIM > | [inline, private] |
| SetCellAncestorsToLocationIndices() | AbstractCellPopulation< DIM > | |
| SetCellUsingLocationIndex(unsigned index, CellPtr pCell) | AbstractCellPopulation< DIM > | |
| SetDataOnAllCells(const std::string &dataName, double dataValue) | AbstractCellPopulation< DIM > | |
| SetDefaultMutationStateOrdering() | AbstractCellPopulation< DIM > | |
| SetEmptySites(const std::set< unsigned > &rEmptySiteIndices) | MultipleCaBasedCellPopulation< DIM > | [private] |
| SetIterateRandomlyOverUpdateRuleCollection(bool iterateRandomly) | AbstractOnLatticeCellPopulation< DIM > | |
| SetNode(unsigned index, ChastePoint< DIM > &rNewLocation) | AbstractOnLatticeCellPopulation< DIM > | |
| AbstractCellPopulation< DIM >::SetNode(unsigned nodeIndex, ChastePoint< ELEMENT_DIM > &rNewLocation)=0 | AbstractCellPopulation< DIM > | [pure virtual] |
| SetOutputCellAges(bool outputCellAges) | AbstractCellPopulation< DIM > | |
| SetOutputCellAncestors(bool outputCellAncestors) | AbstractCellPopulation< DIM > | |
| SetOutputCellCyclePhases(bool outputCellCyclePhases) | AbstractCellPopulation< DIM > | |
| SetOutputCellIdData(bool outputCellIdData) | AbstractCellPopulation< DIM > | |
| SetOutputCellMutationStates(bool outputCellMutationStates) | AbstractCellPopulation< DIM > | |
| SetOutputCellProliferativeTypes(bool outputCellProliferativeTypes) | AbstractCellPopulation< DIM > | |
| SetOutputCellVariables(bool outputCellVariables) | AbstractCellPopulation< DIM > | |
| SetOutputCellVolumes(bool outputCellVolumes) | AbstractCellPopulation< DIM > | |
| SetUpdateNodesInRandomOrder(bool updateNodesInRandomOrder) | AbstractOnLatticeCellPopulation< DIM > | |
| TestMultipleCaBasedCellPopulation (defined in MultipleCaBasedCellPopulation< DIM >) | MultipleCaBasedCellPopulation< DIM > | [friend] |
| Update(bool hasHadBirthsOrDeaths=true) | MultipleCaBasedCellPopulation< DIM > | [virtual] |
| UpdateCellLocations(double dt) | MultipleCaBasedCellPopulation< DIM > | [virtual] |
| Validate() | MultipleCaBasedCellPopulation< DIM > | [private, virtual] |
| WriteCellIdDataToFile() | AbstractCellPopulation< DIM > | |
| WriteCellResultsToFiles(std::vector< unsigned > &rCellProliferativeTypeCounter, std::vector< unsigned > &rCellCyclePhaseCounter) | AbstractCellPopulation< DIM > | |
| WriteCellVolumeResultsToFile() | MultipleCaBasedCellPopulation< DIM > | [virtual] |
| WriteResultsToFiles() | MultipleCaBasedCellPopulation< DIM > | [virtual] |
| WriteTimeAndNodeResultsToFiles() | AbstractCellPopulation< DIM > | [virtual] |
| WriteVtkResultsToFile() | MultipleCaBasedCellPopulation< DIM > | [private, virtual] |
| ~AbstractCellPopulation() | AbstractCellPopulation< DIM > | [virtual] |
| ~AbstractOnLatticeCellPopulation() | AbstractOnLatticeCellPopulation< DIM > | [virtual] |
| ~Identifiable() | Identifiable | [virtual] |
| ~MultipleCaBasedCellPopulation() | MultipleCaBasedCellPopulation< DIM > | [virtual] |
1.7.4