Chaste Release::3.1
NhsModelWithBackwardSolver Member List
This is the complete list of members for NhsModelWithBackwardSolver, including all inherited members.
AbstractContractionModel()AbstractContractionModel [inline]
AbstractOdeBasedContractionModel(unsigned numStateVariables)AbstractOdeBasedContractionModel [inline]
AbstractOdeSystem(unsigned numberOfStateVariables)AbstractOdeSystem
AbstractParameterisedSystem(unsigned numberOfStateVariables)AbstractParameterisedSystem< std::vector< double > >
AbstractUntemplatedParameterisedSystem(unsigned numberOfStateVariables)AbstractUntemplatedParameterisedSystem
boost::serialization::access (defined in AbstractOdeSystem)AbstractOdeSystem [friend]
CalculateBackwardEulerResidual(double calciumTroponin, double z, double Q, double &residualComponent1, double &residualComponent2)NhsModelWithBackwardSolver [private]
CalculateCalciumTrop50()NhsContractionModel [protected]
CalculateCaTropAndZDerivatives(double calciumTroponin, double z, double Q, double &dCaTrop, double &dz)NhsModelWithBackwardSolver [private]
CalculateRootFunction(double time, const std::vector< double > &rY)AbstractOdeSystem [virtual]
CalculateStoppingEvent(double time, const std::vector< double > &rY)AbstractOdeSystem [virtual]
CalculateT0(double z)NhsContractionModel [protected]
CheckParametersOnLoad(const std::vector< double > &rParameters, const std::vector< std::string > &rParameterNames)AbstractParameterisedSystem< std::vector< double > > [protected]
ComputeDerivedQuantities(double time, const std::vector< double > &rState)AbstractParameterisedSystem< std::vector< double > > [virtual]
ComputeDerivedQuantitiesFromCurrentState(double time)AbstractParameterisedSystem< std::vector< double > >
DumpState(const std::string &rMessage)AbstractParameterisedSystem< std::vector< double > > [protected]
DumpState(const std::string &rMessage, std::vector< double >Y)AbstractParameterisedSystem< std::vector< double > > [protected]
EvaluateYDerivatives(double time, const std::vector< double > &rY, std::vector< double > &rDY)NhsContractionModel [virtual]
GetActiveTension()NhsContractionModel [virtual]
GetAnyVariable(unsigned index, double time=0.0, std::vector< double > *pDerivedQuantities=NULL)AbstractParameterisedSystem< std::vector< double > >
GetAnyVariable(const std::string &rName, double time=0.0, std::vector< double > *pDerivedQuantities=NULL)AbstractParameterisedSystem< std::vector< double > >
GetAnyVariableIndex(const std::string &rName) const AbstractUntemplatedParameterisedSystem
GetAnyVariableUnits(unsigned index) const AbstractUntemplatedParameterisedSystem
GetAnyVariableUnits(const std::string &rName) const AbstractUntemplatedParameterisedSystem
GetAttribute(const std::string &rName) const AbstractUntemplatedParameterisedSystem
GetCalciumTroponinValue()NhsContractionModel
GetDerivedQuantityIndex(const std::string &rName) const AbstractUntemplatedParameterisedSystem
GetDerivedQuantityUnits(unsigned index) const AbstractUntemplatedParameterisedSystem
GetInitialConditions() constAbstractParameterisedSystem< std::vector< double > >
GetNextActiveTension()NhsModelWithBackwardSolver [virtual]
GetNumberOfAttributes() const AbstractUntemplatedParameterisedSystem
GetNumberOfDerivedQuantities() const AbstractUntemplatedParameterisedSystem
GetNumberOfParameters() const AbstractUntemplatedParameterisedSystem
GetNumberOfStateVariables() const AbstractUntemplatedParameterisedSystem
GetParameter(unsigned index) constAbstractParameterisedSystem< std::vector< double > >
GetParameter(const std::string &rName) constAbstractParameterisedSystem< std::vector< double > >
GetParameterIndex(const std::string &rName) const AbstractUntemplatedParameterisedSystem
GetParameterUnits(unsigned index) const AbstractUntemplatedParameterisedSystem
GetStateVariable(unsigned index) constAbstractParameterisedSystem< std::vector< double > >
GetStateVariable(const std::string &rName) constAbstractParameterisedSystem< std::vector< double > >
GetStateVariableIndex(const std::string &rName) const AbstractUntemplatedParameterisedSystem
GetStateVariables()AbstractParameterisedSystem< std::vector< double > >
GetStateVariableUnits(unsigned index) const AbstractUntemplatedParameterisedSystem
GetSystemInformation() const AbstractUntemplatedParameterisedSystem
GetSystemName() const AbstractUntemplatedParameterisedSystem
GetUseAnalyticJacobian()AbstractOdeSystem
HasAnyVariable(const std::string &rName) const AbstractUntemplatedParameterisedSystem
HasAttribute(const std::string &rName) const AbstractUntemplatedParameterisedSystem
HasDerivedQuantity(const std::string &rName) const AbstractUntemplatedParameterisedSystem
HasParameter(const std::string &rName) const AbstractUntemplatedParameterisedSystem
HasStateVariable(const std::string &rName) const AbstractUntemplatedParameterisedSystem
ImplicitSolveForQ()NhsModelWithBackwardSolver [private]
IsStretchDependent()NhsContractionModel [inline, virtual]
IsStretchRateDependent()NhsContractionModel [inline, virtual]
mANhsContractionModel [protected, static]
mA1NhsContractionModel [protected, static]
mA2NhsContractionModel [protected, static]
mA3NhsContractionModel [protected, static]
mAlpha0NhsContractionModel [protected, static]
mAlpha1NhsContractionModel [protected, static]
mAlpha2NhsContractionModel [protected, static]
mAlpha3NhsContractionModel [protected, static]
mAlphaR1NhsContractionModel [protected, static]
mAlphaR2NhsContractionModel [protected, static]
mBeta0NhsContractionModel [protected, static]
mBeta1NhsContractionModel [protected, static]
mCalcium50refNhsContractionModel [protected, static]
mCalciumINhsContractionModel [protected]
mCalciumTrop50NhsContractionModel [protected]
mCalciumTroponinMaxNhsContractionModel [protected, static]
mDLambdaDtNhsContractionModel [protected]
mDtNhsModelWithBackwardSolver [private]
mGammaNhsContractionModel [protected, static]
mK1NhsContractionModel [protected]
mK2NhsContractionModel [protected]
mKonNhsContractionModel [protected, static]
mKrefoffNhsContractionModel [protected, static]
mKZNhsContractionModel [protected, static]
mLambdaNhsContractionModel [protected]
mNNhsContractionModel [protected, static]
mNrNhsContractionModel [protected, static]
mNumberOfStateVariablesAbstractUntemplatedParameterisedSystem [protected]
mParametersAbstractParameterisedSystem< std::vector< double > > [protected]
mpSystemInfoAbstractUntemplatedParameterisedSystem [protected]
mStateVariablesAbstractParameterisedSystem< std::vector< double > > [protected]
mTemporaryStateVariablesAbstractOdeBasedContractionModel [protected]
mTimeAbstractOdeBasedContractionModel [protected]
mToleranceNhsModelWithBackwardSolver [private, static]
mTrefNhsContractionModel [protected, static]
mUseAnalyticJacobianAbstractOdeSystem [protected]
mZpNhsContractionModel [protected, static]
NhsContractionModel()NhsContractionModel
NhsModelWithBackwardSolver()NhsModelWithBackwardSolver
ResetToInitialConditions()AbstractParameterisedSystem< std::vector< double > >
rGetConstStateVariables() const AbstractOdeSystem
rGetDerivedQuantityNames() const AbstractUntemplatedParameterisedSystem
rGetDerivedQuantityUnits() const AbstractUntemplatedParameterisedSystem
rGetParameterNames() const AbstractUntemplatedParameterisedSystem
rGetParameterUnits() const AbstractUntemplatedParameterisedSystem
rGetStateVariableNames() const AbstractUntemplatedParameterisedSystem
rGetStateVariables()AbstractParameterisedSystem< std::vector< double > >
rGetStateVariableUnits() const AbstractUntemplatedParameterisedSystem
RunAndUpdate(double startTime, double endTime, double timestep)NhsModelWithBackwardSolver [virtual]
RunDoNotUpdate(double startTime, double endTime, double timestep)NhsModelWithBackwardSolver [virtual]
SetAnyVariable(unsigned index, double value)AbstractParameterisedSystem< std::vector< double > >
SetAnyVariable(const std::string &rName, double value)AbstractParameterisedSystem< std::vector< double > >
SetDefaultInitialCondition(unsigned index, double initialCondition)AbstractParameterisedSystem< std::vector< double > >
SetDefaultInitialConditions(const std::vector< double > &rInitialConditions)AbstractParameterisedSystem< std::vector< double > >
SetInputParameters(ContractionModelInputParameters &rInputParameters)NhsContractionModel [virtual]
SetIntracellularCalciumConcentration(double calciumConcentration)NhsContractionModel
SetParameter(const std::string &rName, double value)AbstractParameterisedSystem< std::vector< double > >
SetParameter(unsigned index, double value)AbstractParameterisedSystem< std::vector< double > >
SetStateVariable(unsigned index, double newValue)AbstractParameterisedSystem< std::vector< double > >
SetStateVariable(const std::string &rName, double newValue)AbstractParameterisedSystem< std::vector< double > >
SetStateVariables(const std::vector< double > &rStateVariables)AbstractParameterisedSystem< std::vector< double > >
SetStretch(double stretch)AbstractContractionModel [inline]
SetStretchAndStretchRate(double lambda, double dlambdaDt)NhsContractionModel [virtual]
UpdateStateVariables()AbstractOdeBasedContractionModel [inline, virtual]
VerifyStateVariables()AbstractParameterisedSystem< std::vector< double > > [inline, virtual]
~AbstractContractionModel()AbstractContractionModel [inline, virtual]
~AbstractOdeSystem()AbstractOdeSystem [virtual]
~AbstractUntemplatedParameterisedSystem()AbstractUntemplatedParameterisedSystem [virtual]