Chaste Release::3.1
PottsBasedCellPopulation< DIM > Member List
This is the complete list of members for PottsBasedCellPopulation< DIM >, including all inherited members.
AbstractCellPopulation(AbstractMesh< ELEMENT_DIM, ELEMENT_DIM > &rMesh)AbstractCellPopulation< DIM > [protected]
AbstractCellPopulation(AbstractMesh< ELEMENT_DIM, ELEMENT_DIM > &rMesh, std::vector< CellPtr > &rCells, const std::vector< unsigned > locationIndices=std::vector< unsigned >())AbstractCellPopulation< DIM >
AbstractOnLatticeCellPopulation(AbstractMesh< DIM, DIM > &rMesh)AbstractOnLatticeCellPopulation< DIM > [protected]
AbstractOnLatticeCellPopulation(AbstractMesh< DIM, DIM > &rMesh, std::vector< CellPtr > &rCells, const std::vector< unsigned > locationIndices=std::vector< unsigned >(), bool deleteMesh=false)AbstractOnLatticeCellPopulation< DIM >
AddCell(CellPtr pNewCell, const c_vector< double, DIM > &rCellDivisionVector, CellPtr pParentCell=CellPtr())PottsBasedCellPopulation< DIM >
AbstractOnLatticeCellPopulation::AddCell(CellPtr pNewCell, const c_vector< double, ELEMENT_DIM > &rCellDivisionVector, CellPtr pParentCell=CellPtr())=0AbstractCellPopulation< DIM > [pure virtual]
AddCellUsingLocationIndex(unsigned index, CellPtr pCell)AbstractCellPopulation< DIM > [virtual]
AddUpdateRule(boost::shared_ptr< AbstractPottsUpdateRule< DIM > > pUpdateRule)PottsBasedCellPopulation< DIM >
Begin()AbstractCellPopulation< DIM >
boost::serialization::access classPottsBasedCellPopulation< DIM > [friend]
CloseOutputFiles()PottsBasedCellPopulation< DIM > [virtual]
CreateElementTessellation()PottsBasedCellPopulation< DIM >
CreateMutableMesh()PottsBasedCellPopulation< DIM >
CreateOutputFiles(const std::string &rDirectory, bool cleanOutputDirectory)PottsBasedCellPopulation< DIM > [virtual]
End()AbstractCellPopulation< DIM >
GenerateCellResults(CellPtr pCell, std::vector< unsigned > &rCellProliferativeTypeCounter, std::vector< unsigned > &rCellCyclePhaseCounter)AbstractCellPopulation< DIM > [virtual]
GenerateCellResultsAndWriteToFiles()PottsBasedCellPopulation< DIM > [virtual]
GetCellAncestors()AbstractCellPopulation< DIM >
GetCellMutationStateCount()AbstractCellPopulation< DIM >
GetCellPropertyRegistry()AbstractCellPopulation< DIM >
GetCellsUsingLocationIndex(unsigned index)AbstractCellPopulation< DIM >
GetCellUsingLocationIndex(unsigned index)AbstractCellPopulation< DIM >
GetCentroidOfCellPopulation()AbstractCellPopulation< DIM >
GetElement(unsigned elementIndex)PottsBasedCellPopulation< DIM >
GetElementCorrespondingToCell(CellPtr pCell)PottsBasedCellPopulation< DIM >
GetElementTessellation()PottsBasedCellPopulation< DIM >
GetIdentifier() const Identifiable
GetIterateRandomlyOverUpdateRuleCollection()AbstractOnLatticeCellPopulation< DIM >
GetLocationIndexUsingCell(CellPtr pCell)AbstractCellPopulation< DIM >
GetLocationOfCellCentre(CellPtr pCell)PottsBasedCellPopulation< DIM > [virtual]
GetMutableMesh()PottsBasedCellPopulation< DIM >
GetNeighbouringNodeIndices(unsigned index)PottsBasedCellPopulation< DIM > [virtual]
GetNode(unsigned index)PottsBasedCellPopulation< DIM > [virtual]
GetNumElements()PottsBasedCellPopulation< DIM >
GetNumNodes()PottsBasedCellPopulation< DIM > [virtual]
GetNumRealCells()AbstractCellPopulation< DIM >
GetNumSweepsPerTimestep()PottsBasedCellPopulation< DIM >
GetOutputCellAges()AbstractCellPopulation< DIM >
GetOutputCellAncestors()AbstractCellPopulation< DIM >
GetOutputCellCyclePhases()AbstractCellPopulation< DIM >
GetOutputCellIdData()AbstractCellPopulation< DIM >
GetOutputCellMutationStates()AbstractCellPopulation< DIM >
GetOutputCellProliferativeTypes()AbstractCellPopulation< DIM >
GetOutputCellVariables()AbstractCellPopulation< DIM >
GetOutputCellVolumes()AbstractCellPopulation< DIM >
GetSizeOfCellPopulation()AbstractCellPopulation< DIM >
GetTemperature()PottsBasedCellPopulation< DIM >
GetUpdateNodesInRandomOrder()AbstractOnLatticeCellPopulation< DIM >
GetVolumeOfCell(CellPtr pCell)PottsBasedCellPopulation< DIM > [virtual]
GetWidth(const unsigned &rDimension)PottsBasedCellPopulation< DIM > [virtual]
InitialiseCells()AbstractCellPopulation< DIM >
IsCellAssociatedWithADeletedLocation(CellPtr pCell)PottsBasedCellPopulation< DIM > [virtual]
IsCellAttachedToLocationIndex(unsigned index)AbstractCellPopulation< DIM >
mCellCyclePhaseCountAbstractCellPopulation< DIM > [protected]
mCellLocationMapAbstractCellPopulation< DIM > [protected]
mCellProliferativeTypeCountAbstractCellPopulation< DIM > [protected]
mCellsAbstractCellPopulation< DIM > [protected]
mCentroidAbstractCellPopulation< DIM > [protected]
mDeleteMeshAbstractOnLatticeCellPopulation< DIM > [protected]
mDirPathAbstractCellPopulation< DIM > [protected]
mIterateRandomlyOverUpdateRuleCollectionAbstractOnLatticeCellPopulation< DIM > [protected]
mLocationCellMapAbstractCellPopulation< DIM > [protected]
mNumSweepsPerTimestepPottsBasedCellPopulation< DIM > [private]
mOutputCellAgesAbstractCellPopulation< DIM > [protected]
mOutputCellAncestorsAbstractCellPopulation< DIM > [protected]
mOutputCellCyclePhasesAbstractCellPopulation< DIM > [protected]
mOutputCellIdDataAbstractCellPopulation< DIM > [protected]
mOutputCellMutationStatesAbstractCellPopulation< DIM > [protected]
mOutputCellProliferativeTypesAbstractCellPopulation< DIM > [protected]
mOutputCellVariablesAbstractCellPopulation< DIM > [protected]
mOutputCellVolumesAbstractCellPopulation< DIM > [protected]
MoveCellInLocationMap(CellPtr pCell, unsigned old_index, unsigned new_index)AbstractCellPopulation< DIM >
mpCellAgesFileAbstractCellPopulation< DIM > [protected]
mpCellCyclePhasesFileAbstractCellPopulation< DIM > [protected]
mpCellIdFileAbstractCellPopulation< DIM > [protected]
mpCellMutationStatesFileAbstractCellPopulation< DIM > [protected]
mpCellProliferativeTypesFileAbstractCellPopulation< DIM > [protected]
mpCellPropertyRegistryAbstractCellPopulation< DIM > [protected]
mpCellVariablesFileAbstractCellPopulation< DIM > [protected]
mpCellVolumesFileAbstractCellPopulation< DIM > [protected]
mpElementTessellationPottsBasedCellPopulation< DIM > [private]
mpMutableMeshPottsBasedCellPopulation< DIM > [private]
mpPottsMeshPottsBasedCellPopulation< DIM > [private]
mpVizBoundaryNodesFileAbstractCellPopulation< DIM > [protected]
mpVizCellAncestorsFileAbstractCellPopulation< DIM > [protected]
mpVizCellProliferativePhasesFileAbstractCellPopulation< DIM > [protected]
mpVizCellProliferativeTypesFileAbstractCellPopulation< DIM > [protected]
mpVizElementsFilePottsBasedCellPopulation< DIM > [private]
mpVizNodesFileAbstractCellPopulation< DIM > [protected]
mpVtkMetaFileAbstractCellPopulation< DIM > [protected]
mrMeshAbstractCellPopulation< DIM > [protected]
mTemperaturePottsBasedCellPopulation< DIM > [private]
mUpdateNodesInRandomOrderAbstractOnLatticeCellPopulation< DIM > [protected]
mUpdateRuleCollectionPottsBasedCellPopulation< DIM > [private]
OutputCellPopulationInfo(out_stream &rParamsFile)AbstractCellPopulation< DIM >
OutputCellPopulationParameters(out_stream &rParamsFile)PottsBasedCellPopulation< DIM > [virtual]
PottsBasedCellPopulation(PottsMesh< DIM > &rMesh, std::vector< CellPtr > &rCells, bool deleteMesh=false, bool validate=true, const std::vector< unsigned > locationIndices=std::vector< unsigned >())PottsBasedCellPopulation< DIM >
PottsBasedCellPopulation(PottsMesh< DIM > &rMesh)PottsBasedCellPopulation< DIM >
RemoveAllUpdateRules()PottsBasedCellPopulation< DIM >
RemoveCellUsingLocationIndex(unsigned index, CellPtr pCell)AbstractCellPopulation< DIM > [virtual]
RemoveDeadCells()PottsBasedCellPopulation< DIM > [virtual]
rGetCellCyclePhaseCount() constAbstractCellPopulation< DIM >
rGetCellProliferativeTypeCount() constAbstractCellPopulation< DIM >
rGetCells()AbstractCellPopulation< DIM >
rGetMesh()PottsBasedCellPopulation< DIM >
rGetMesh() const PottsBasedCellPopulation< DIM >
rGetUpdateRuleCollection() const PottsBasedCellPopulation< DIM >
serialize(Archive &archive, const unsigned int version)PottsBasedCellPopulation< DIM > [inline, private]
SetCellAncestorsToLocationIndices()AbstractCellPopulation< DIM >
SetCellUsingLocationIndex(unsigned index, CellPtr pCell)AbstractCellPopulation< DIM >
SetDataOnAllCells(const std::string &dataName, double dataValue)AbstractCellPopulation< DIM >
SetDefaultMutationStateOrdering()AbstractCellPopulation< DIM >
SetIterateRandomlyOverUpdateRuleCollection(bool iterateRandomly)AbstractOnLatticeCellPopulation< DIM >
SetNode(unsigned index, ChastePoint< DIM > &rNewLocation)AbstractOnLatticeCellPopulation< DIM >
AbstractCellPopulation< DIM >::SetNode(unsigned nodeIndex, ChastePoint< ELEMENT_DIM > &rNewLocation)=0AbstractCellPopulation< DIM > [pure virtual]
SetNumSweepsPerTimestep(unsigned numSweepsPerTimestep)PottsBasedCellPopulation< DIM >
SetOutputCellAges(bool outputCellAges)AbstractCellPopulation< DIM >
SetOutputCellAncestors(bool outputCellAncestors)AbstractCellPopulation< DIM >
SetOutputCellCyclePhases(bool outputCellCyclePhases)AbstractCellPopulation< DIM >
SetOutputCellIdData(bool outputCellIdData)AbstractCellPopulation< DIM >
SetOutputCellMutationStates(bool outputCellMutationStates)AbstractCellPopulation< DIM >
SetOutputCellProliferativeTypes(bool outputCellProliferativeTypes)AbstractCellPopulation< DIM >
SetOutputCellVariables(bool outputCellVariables)AbstractCellPopulation< DIM >
SetOutputCellVolumes(bool outputCellVolumes)AbstractCellPopulation< DIM >
SetTemperature(double temperature)PottsBasedCellPopulation< DIM >
SetUpdateNodesInRandomOrder(bool updateNodesInRandomOrder)AbstractOnLatticeCellPopulation< DIM >
TestPottsBasedCellPopulation (defined in PottsBasedCellPopulation< DIM >)PottsBasedCellPopulation< DIM > [friend]
Update(bool hasHadBirthsOrDeaths=true)PottsBasedCellPopulation< DIM > [virtual]
UpdateCellLocations(double dt)PottsBasedCellPopulation< DIM > [virtual]
Validate()PottsBasedCellPopulation< DIM > [private, virtual]
WriteCellIdDataToFile()AbstractCellPopulation< DIM >
WriteCellResultsToFiles(std::vector< unsigned > &rCellProliferativeTypeCounter, std::vector< unsigned > &rCellCyclePhaseCounter)AbstractCellPopulation< DIM >
WriteCellVolumeResultsToFile()PottsBasedCellPopulation< DIM > [virtual]
WriteResultsToFiles()PottsBasedCellPopulation< DIM > [virtual]
WriteTimeAndNodeResultsToFiles()AbstractCellPopulation< DIM > [virtual]
WriteVtkResultsToFile()PottsBasedCellPopulation< DIM > [private, virtual]
~AbstractCellPopulation()AbstractCellPopulation< DIM > [virtual]
~AbstractOnLatticeCellPopulation()AbstractOnLatticeCellPopulation< DIM > [virtual]
~Identifiable()Identifiable [virtual]
~PottsBasedCellPopulation()PottsBasedCellPopulation< DIM > [virtual]