, including all inherited members.
| AbstractCellPopulation(AbstractMesh< ELEMENT_DIM, SPACE_DIM > &rMesh) | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | [protected] |
| AbstractCellPopulation(AbstractMesh< ELEMENT_DIM, SPACE_DIM > &rMesh, std::vector< CellPtr > &rCells, const std::vector< unsigned > locationIndices=std::vector< unsigned >()) | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | |
| AbstractOffLatticeCellPopulation(AbstractMesh< ELEMENT_DIM, ELEMENT_DIM > &rMesh) | AbstractOffLatticeCellPopulation< DIM > | [protected] |
| AbstractOffLatticeCellPopulation(AbstractMesh< ELEMENT_DIM, ELEMENT_DIM > &rMesh, std::vector< CellPtr > &rCells, const std::vector< unsigned > locationIndices=std::vector< unsigned >()) | AbstractOffLatticeCellPopulation< DIM > | |
| AddCell(CellPtr pNewCell, const c_vector< double, DIM > &rCellDivisionVector, CellPtr pParentCell=CellPtr()) | VertexBasedCellPopulation< DIM > | |
| AbstractOffLatticeCellPopulation< DIM >::AddCell(CellPtr pNewCell, const c_vector< double, SPACE_DIM > &rCellDivisionVector, CellPtr pParentCell=CellPtr())=0 | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | [pure virtual] |
| AddCellUsingLocationIndex(unsigned index, CellPtr pCell) | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | [virtual] |
| AddNode(Node< DIM > *pNewNode) | VertexBasedCellPopulation< DIM > | |
| AbstractOffLatticeCellPopulation< DIM >::AddNode(Node< ELEMENT_DIM > *pNewNode)=0 | AbstractOffLatticeCellPopulation< DIM > | [pure virtual] |
| Begin() | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | |
| boost::serialization::access class | VertexBasedCellPopulation< DIM > | [friend] |
| CloseOutputFiles() | VertexBasedCellPopulation< DIM > | [virtual] |
| CreateOutputFiles(const std::string &rDirectory, bool cleanOutputDirectory) | VertexBasedCellPopulation< DIM > | [virtual] |
| End() | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | |
| GenerateCellResults(CellPtr pCell, std::vector< unsigned > &rCellProliferativeTypeCounter, std::vector< unsigned > &rCellCyclePhaseCounter) | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | [virtual] |
| GenerateCellResultsAndWriteToFiles() | VertexBasedCellPopulation< DIM > | [virtual] |
| GetAbsoluteMovementThreshold() | AbstractOffLatticeCellPopulation< DIM > | |
| GetCellAncestors() | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | |
| GetCellMutationStateCount() | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | |
| GetCellPropertyRegistry() | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | |
| GetCellsUsingLocationIndex(unsigned index) | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | |
| GetCellUsingLocationIndex(unsigned index) | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | |
| GetCentroidOfCellPopulation() | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | |
| GetDampingConstant(unsigned nodeIndex) | VertexBasedCellPopulation< DIM > | [virtual] |
| GetDampingConstantMutant() | AbstractOffLatticeCellPopulation< DIM > | |
| GetDampingConstantNormal() | AbstractOffLatticeCellPopulation< DIM > | |
| GetElement(unsigned elementIndex) | VertexBasedCellPopulation< DIM > | |
| GetElementCorrespondingToCell(CellPtr pCell) | VertexBasedCellPopulation< DIM > | |
| GetIdentifier() const | Identifiable | |
| GetLocationIndexUsingCell(CellPtr pCell) | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | |
| GetLocationOfCellCentre(CellPtr pCell) | VertexBasedCellPopulation< DIM > | [virtual] |
| GetNeighbouringNodeIndices(unsigned index) | VertexBasedCellPopulation< DIM > | [virtual] |
| GetNode(unsigned index) | VertexBasedCellPopulation< DIM > | [virtual] |
| GetNumElements() | VertexBasedCellPopulation< DIM > | |
| GetNumNodes() | VertexBasedCellPopulation< DIM > | [virtual] |
| GetNumRealCells() | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | |
| GetOutputCellAges() | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | |
| GetOutputCellAncestors() | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | |
| GetOutputCellCyclePhases() | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | |
| GetOutputCellIdData() | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | |
| GetOutputCellMutationStates() | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | |
| GetOutputCellProliferativeTypes() | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | |
| GetOutputCellVariables() | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | |
| GetOutputCellVolumes() | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | |
| GetSizeOfCellPopulation() | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | |
| GetVolumeOfCell(CellPtr pCell) | VertexBasedCellPopulation< DIM > | [virtual] |
| GetWidth(const unsigned &rDimension) | VertexBasedCellPopulation< DIM > | [virtual] |
| InitialiseCells() | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | |
| IsCellAssociatedWithADeletedLocation(CellPtr pCell) | VertexBasedCellPopulation< DIM > | [virtual] |
| IsCellAttachedToLocationIndex(unsigned index) | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | |
| mAbsoluteMovementThreshold | AbstractOffLatticeCellPopulation< DIM > | [protected] |
| mCellCyclePhaseCount | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | [protected] |
| mCellLocationMap | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | [protected] |
| mCellProliferativeTypeCount | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | [protected] |
| mCells | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | [protected] |
| mCentroid | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | [protected] |
| mDampingConstantMutant | AbstractOffLatticeCellPopulation< DIM > | [protected] |
| mDampingConstantNormal | AbstractOffLatticeCellPopulation< DIM > | [protected] |
| mDeleteMesh | VertexBasedCellPopulation< DIM > | [private] |
| mDirPath | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | [protected] |
| mLocationCellMap | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | [protected] |
| mOutputCellAges | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | [protected] |
| mOutputCellAncestors | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | [protected] |
| mOutputCellCyclePhases | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | [protected] |
| mOutputCellIdData | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | [protected] |
| mOutputCellMutationStates | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | [protected] |
| mOutputCellProliferativeTypes | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | [protected] |
| mOutputCellVariables | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | [protected] |
| mOutputCellVolumes | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | [protected] |
| MoveCellInLocationMap(CellPtr pCell, unsigned old_index, unsigned new_index) | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | |
| mpCellAgesFile | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | [protected] |
| mpCellCyclePhasesFile | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | [protected] |
| mpCellIdFile | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | [protected] |
| mpCellMutationStatesFile | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | [protected] |
| mpCellProliferativeTypesFile | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | [protected] |
| mpCellPropertyRegistry | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | [protected] |
| mpCellVariablesFile | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | [protected] |
| mpCellVolumesFile | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | [protected] |
| mpMutableVertexMesh | VertexBasedCellPopulation< DIM > | [private] |
| mpT1SwapLocationsFile | VertexBasedCellPopulation< DIM > | [private] |
| mpT3SwapLocationsFile | VertexBasedCellPopulation< DIM > | [private] |
| mpVizBoundaryNodesFile | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | [protected] |
| mpVizCellAncestorsFile | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | [protected] |
| mpVizCellProliferativePhasesFile | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | [protected] |
| mpVizCellProliferativeTypesFile | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | [protected] |
| mpVizElementsFile | VertexBasedCellPopulation< DIM > | [private] |
| mpVizNodesFile | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | [protected] |
| mpVtkMetaFile | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | [protected] |
| mrMesh | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | [protected] |
| OutputCellPopulationInfo(out_stream &rParamsFile) | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | |
| OutputCellPopulationParameters(out_stream &rParamsFile) | VertexBasedCellPopulation< DIM > | [virtual] |
| RemoveCellUsingLocationIndex(unsigned index, CellPtr pCell) | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | [virtual] |
| RemoveDeadCells() | VertexBasedCellPopulation< DIM > | [virtual] |
| rGetCellCyclePhaseCount() const | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | |
| rGetCellProliferativeTypeCount() const | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | |
| rGetCells() | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | |
| rGetMesh() | VertexBasedCellPopulation< DIM > | |
| rGetMesh() const | VertexBasedCellPopulation< DIM > | |
| serialize(Archive &archive, const unsigned int version) | VertexBasedCellPopulation< DIM > | [inline, private] |
| SetAbsoluteMovementThreshold(double absoluteMovementThreshold) | AbstractOffLatticeCellPopulation< DIM > | |
| SetCellAncestorsToLocationIndices() | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | |
| SetCellUsingLocationIndex(unsigned index, CellPtr pCell) | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | |
| SetDampingConstantMutant(double dampingConstantMutant) | AbstractOffLatticeCellPopulation< DIM > | |
| SetDampingConstantNormal(double dampingConstantNormal) | AbstractOffLatticeCellPopulation< DIM > | |
| SetDataOnAllCells(const std::string &dataName, double dataValue) | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | |
| SetDefaultMutationStateOrdering() | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | |
| SetNode(unsigned index, ChastePoint< DIM > &rNewLocation) | VertexBasedCellPopulation< DIM > | |
| AbstractOffLatticeCellPopulation< DIM >::SetNode(unsigned nodeIndex, ChastePoint< ELEMENT_DIM > &rNewLocation)=0 | AbstractOffLatticeCellPopulation< DIM > | [pure virtual] |
| AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM >::SetNode(unsigned nodeIndex, ChastePoint< SPACE_DIM > &rNewLocation)=0 | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | [pure virtual] |
| SetOutputCellAges(bool outputCellAges) | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | |
| SetOutputCellAncestors(bool outputCellAncestors) | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | |
| SetOutputCellCyclePhases(bool outputCellCyclePhases) | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | |
| SetOutputCellIdData(bool outputCellIdData) | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | |
| SetOutputCellMutationStates(bool outputCellMutationStates) | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | |
| SetOutputCellProliferativeTypes(bool outputCellProliferativeTypes) | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | |
| SetOutputCellVariables(bool outputCellVariables) | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | |
| SetOutputCellVolumes(bool outputCellVolumes) | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | |
| Update(bool hasHadBirthsOrDeaths=true) | VertexBasedCellPopulation< DIM > | [virtual] |
| UpdateNodeLocations(const std::vector< c_vector< double, DIM > > &rNodeForces, double dt) | VertexBasedCellPopulation< DIM > | |
| AbstractOffLatticeCellPopulation< DIM >::UpdateNodeLocations(const std::vector< c_vector< double, ELEMENT_DIM > > &rNodeForces, double dt)=0 | AbstractOffLatticeCellPopulation< DIM > | [pure virtual] |
| Validate() | VertexBasedCellPopulation< DIM > | [private, virtual] |
| VertexBasedCellPopulation(MutableVertexMesh< DIM, DIM > &rMesh, std::vector< CellPtr > &rCells, bool deleteMesh=false, bool validate=true, const std::vector< unsigned > locationIndices=std::vector< unsigned >()) | VertexBasedCellPopulation< DIM > | |
| VertexBasedCellPopulation(MutableVertexMesh< DIM, DIM > &rMesh) | VertexBasedCellPopulation< DIM > | |
| WriteCellIdDataToFile() | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | |
| WriteCellResultsToFiles(std::vector< unsigned > &rCellProliferativeTypeCounter, std::vector< unsigned > &rCellCyclePhaseCounter) | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | |
| WriteCellVolumeResultsToFile() | VertexBasedCellPopulation< DIM > | [virtual] |
| WriteResultsToFiles() | VertexBasedCellPopulation< DIM > | [virtual] |
| WriteTimeAndNodeResultsToFiles() | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | [virtual] |
| WriteVtkResultsToFile() | VertexBasedCellPopulation< DIM > | [private, virtual] |
| ~AbstractCellPopulation() | AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | [virtual] |
| ~Identifiable() | Identifiable | [virtual] |
| ~VertexBasedCellPopulation() | VertexBasedCellPopulation< DIM > | [virtual] |
1.7.4