, including all inherited members.
| AbstractOdeSystem(unsigned numberOfStateVariables) | AbstractOdeSystem | |
| AbstractParameterisedSystem(unsigned numberOfStateVariables) | AbstractParameterisedSystem< std::vector< double > > | |
| AbstractUntemplatedParameterisedSystem(unsigned numberOfStateVariables) | AbstractUntemplatedParameterisedSystem | |
| boost::serialization::access (defined in WntCellCycleOdeSystem) | WntCellCycleOdeSystem | [friend] |
| CalculateRootFunction(double time, const std::vector< double > &rY) | WntCellCycleOdeSystem | [virtual] |
| CalculateStoppingEvent(double time, const std::vector< double > &rY) | WntCellCycleOdeSystem | [virtual] |
| CheckParametersOnLoad(const std::vector< double > &rParameters, const std::vector< std::string > &rParameterNames) | AbstractParameterisedSystem< std::vector< double > > | [protected] |
| ComputeDerivedQuantities(double time, const std::vector< double > &rState) | AbstractParameterisedSystem< std::vector< double > > | [virtual] |
| ComputeDerivedQuantitiesFromCurrentState(double time) | AbstractParameterisedSystem< std::vector< double > > | |
| DumpState(const std::string &rMessage) | AbstractParameterisedSystem< std::vector< double > > | [protected] |
| DumpState(const std::string &rMessage, std::vector< double >Y) | AbstractParameterisedSystem< std::vector< double > > | [protected] |
| EvaluateYDerivatives(double time, const std::vector< double > &rY, std::vector< double > &rDY) | WntCellCycleOdeSystem | [virtual] |
| GetAnyVariable(unsigned index, double time=0.0, std::vector< double > *pDerivedQuantities=NULL) | AbstractParameterisedSystem< std::vector< double > > | |
| GetAnyVariable(const std::string &rName, double time=0.0, std::vector< double > *pDerivedQuantities=NULL) | AbstractParameterisedSystem< std::vector< double > > | |
| GetAnyVariableIndex(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| GetAnyVariableUnits(unsigned index) const | AbstractUntemplatedParameterisedSystem | |
| GetAnyVariableUnits(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| GetAttribute(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| GetDerivedQuantityIndex(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| GetDerivedQuantityUnits(unsigned index) const | AbstractUntemplatedParameterisedSystem | |
| GetInitialConditions() const | AbstractParameterisedSystem< std::vector< double > > | |
| GetMutationState() const | WntCellCycleOdeSystem | |
| GetNumberOfAttributes() const | AbstractUntemplatedParameterisedSystem | |
| GetNumberOfDerivedQuantities() const | AbstractUntemplatedParameterisedSystem | |
| GetNumberOfParameters() const | AbstractUntemplatedParameterisedSystem | |
| GetNumberOfStateVariables() const | AbstractUntemplatedParameterisedSystem | |
| GetParameter(unsigned index) const | AbstractParameterisedSystem< std::vector< double > > | |
| GetParameter(const std::string &rName) const | AbstractParameterisedSystem< std::vector< double > > | |
| GetParameterIndex(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| GetParameterUnits(unsigned index) const | AbstractUntemplatedParameterisedSystem | |
| GetStateVariable(unsigned index) const | AbstractParameterisedSystem< std::vector< double > > | |
| GetStateVariable(const std::string &rName) const | AbstractParameterisedSystem< std::vector< double > > | |
| GetStateVariableIndex(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| GetStateVariables() | AbstractParameterisedSystem< std::vector< double > > | |
| GetStateVariableUnits(unsigned index) const | AbstractUntemplatedParameterisedSystem | |
| GetSystemInformation() const | AbstractUntemplatedParameterisedSystem | |
| GetSystemName() const | AbstractUntemplatedParameterisedSystem | |
| GetUseAnalyticJacobian() | AbstractOdeSystem | |
| GetWntLevel() const | WntCellCycleOdeSystem | |
| HasAnyVariable(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| HasAttribute(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| HasDerivedQuantity(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| HasParameter(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| HasStateVariable(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| Init() | WntCellCycleOdeSystem | |
| ma2d | WntCellCycleOdeSystem | [private] |
| ma3d | WntCellCycleOdeSystem | [private] |
| ma4d | WntCellCycleOdeSystem | [private] |
| ma5d | WntCellCycleOdeSystem | [private] |
| mad | WntCellCycleOdeSystem | [private] |
| mJ11d | WntCellCycleOdeSystem | [private] |
| mJ12d | WntCellCycleOdeSystem | [private] |
| mJ13d | WntCellCycleOdeSystem | [private] |
| mJ61d | WntCellCycleOdeSystem | [private] |
| mJ62d | WntCellCycleOdeSystem | [private] |
| mJ63d | WntCellCycleOdeSystem | [private] |
| mk16d | WntCellCycleOdeSystem | [private] |
| mk23d | WntCellCycleOdeSystem | [private] |
| mk2d | WntCellCycleOdeSystem | [private] |
| mk34d | WntCellCycleOdeSystem | [private] |
| mk3d | WntCellCycleOdeSystem | [private] |
| mk43d | WntCellCycleOdeSystem | [private] |
| mk61d | WntCellCycleOdeSystem | [private] |
| mKm1d | WntCellCycleOdeSystem | [private] |
| mkpd | WntCellCycleOdeSystem | [private] |
| mNumberOfStateVariables | AbstractUntemplatedParameterisedSystem | [protected] |
| mParameters | AbstractParameterisedSystem< std::vector< double > > | [protected] |
| mphi_i | WntCellCycleOdeSystem | [private] |
| mphi_j | WntCellCycleOdeSystem | [private] |
| mphi_p | WntCellCycleOdeSystem | [private] |
| mphi_r | WntCellCycleOdeSystem | [private] |
| mPhiE2F1 | WntCellCycleOdeSystem | [private] |
| mpMutationState | WntCellCycleOdeSystem | [private] |
| mpSystemInfo | AbstractUntemplatedParameterisedSystem | [protected] |
| mStateVariables | AbstractParameterisedSystem< std::vector< double > > | [protected] |
| mUseAnalyticJacobian | AbstractOdeSystem | [protected] |
| mWntLevel | WntCellCycleOdeSystem | [private] |
| ResetToInitialConditions() | AbstractParameterisedSystem< std::vector< double > > | |
| rGetConstStateVariables() const | AbstractOdeSystem | |
| rGetDerivedQuantityNames() const | AbstractUntemplatedParameterisedSystem | |
| rGetDerivedQuantityUnits() const | AbstractUntemplatedParameterisedSystem | |
| rGetParameterNames() const | AbstractUntemplatedParameterisedSystem | |
| rGetParameterUnits() const | AbstractUntemplatedParameterisedSystem | |
| rGetStateVariableNames() const | AbstractUntemplatedParameterisedSystem | |
| rGetStateVariables() | AbstractParameterisedSystem< std::vector< double > > | |
| rGetStateVariableUnits() const | AbstractUntemplatedParameterisedSystem | |
| serialize(Archive &archive, const unsigned int version) | WntCellCycleOdeSystem | [inline, private] |
| SetAnyVariable(unsigned index, double value) | AbstractParameterisedSystem< std::vector< double > > | |
| SetAnyVariable(const std::string &rName, double value) | AbstractParameterisedSystem< std::vector< double > > | |
| SetDefaultInitialCondition(unsigned index, double initialCondition) | AbstractParameterisedSystem< std::vector< double > > | |
| SetDefaultInitialConditions(const std::vector< double > &rInitialConditions) | AbstractParameterisedSystem< std::vector< double > > | |
| SetMutationState(boost::shared_ptr< AbstractCellMutationState > pMutationState) | WntCellCycleOdeSystem | |
| SetParameter(const std::string &rName, double value) | AbstractParameterisedSystem< std::vector< double > > | |
| SetParameter(unsigned index, double value) | AbstractParameterisedSystem< std::vector< double > > | |
| SetStateVariable(unsigned index, double newValue) | AbstractParameterisedSystem< std::vector< double > > | |
| SetStateVariable(const std::string &rName, double newValue) | AbstractParameterisedSystem< std::vector< double > > | |
| SetStateVariables(const std::vector< double > &rStateVariables) | AbstractParameterisedSystem< std::vector< double > > | |
| VerifyStateVariables() | AbstractParameterisedSystem< std::vector< double > > | [inline, virtual] |
| WntCellCycleOdeSystem(double wntLevel=0.0, boost::shared_ptr< AbstractCellMutationState > pMutationState=boost::shared_ptr< AbstractCellMutationState >(), std::vector< double > stateVariables=std::vector< double >()) | WntCellCycleOdeSystem | |
| ~AbstractOdeSystem() | AbstractOdeSystem | [virtual] |
| ~AbstractUntemplatedParameterisedSystem() | AbstractUntemplatedParameterisedSystem | [virtual] |
| ~WntCellCycleOdeSystem() | WntCellCycleOdeSystem | |
1.7.4