CellMutationStatesCountWriter.cpp

/*

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*/

#include "CellMutationStatesCountWriter.hpp"
#include "AbstractCellPopulation.hpp"
#include "MeshBasedCellPopulation.hpp"
#include "CaBasedCellPopulation.hpp"
#include "NodeBasedCellPopulation.hpp"
#include "PottsBasedCellPopulation.hpp"
#include "VertexBasedCellPopulation.hpp"

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
CellMutationStatesCountWriter<ELEMENT_DIM, SPACE_DIM>::CellMutationStatesCountWriter()
    : AbstractCellPopulationCountWriter<ELEMENT_DIM, SPACE_DIM>("cellmutationstates.dat")
{
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
void CellMutationStatesCountWriter<ELEMENT_DIM, SPACE_DIM>::WriteHeader(AbstractCellPopulation<ELEMENT_DIM, SPACE_DIM>* pCellPopulation)
{
    if (PetscTools::AmMaster())
    {
        pCellPopulation->SetDefaultCellMutationStateAndProliferativeTypeOrdering();

        *this->mpOutStream << "Time\t ";

        const std::vector<boost::shared_ptr<AbstractCellProperty> >& r_cell_properties =
            pCellPopulation->GetCellPropertyRegistry()->rGetAllCellProperties();

        for (unsigned i=0; i<r_cell_properties.size(); i++)
        {
            if (r_cell_properties[i]->IsSubType<AbstractCellMutationState>())
            {
                *this->mpOutStream << r_cell_properties[i]->GetIdentifier() << "\t ";
            }
        }
        this->WriteNewline();
    }
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
void CellMutationStatesCountWriter<ELEMENT_DIM, SPACE_DIM>::VisitAnyPopulation(AbstractCellPopulation<SPACE_DIM, SPACE_DIM>* pCellPopulation)
{
    std::vector<unsigned> mutation_state_count = pCellPopulation->GetCellMutationStateCount();

    if (PetscTools::AmMaster())
    {
        for (unsigned i=0; i<mutation_state_count.size(); i++)
        {
            *this->mpOutStream << mutation_state_count[i] << "\t";
        }
    }
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
void CellMutationStatesCountWriter<ELEMENT_DIM, SPACE_DIM>::Visit(MeshBasedCellPopulation<ELEMENT_DIM, SPACE_DIM>* pCellPopulation)
{
    std::vector<unsigned> mutation_state_count = pCellPopulation->GetCellMutationStateCount();

    if (PetscTools::AmMaster())
    {
        for (unsigned i=0; i<mutation_state_count.size(); i++)
        {
            *this->mpOutStream << mutation_state_count[i] << "\t";
        }
    }
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
void CellMutationStatesCountWriter<ELEMENT_DIM, SPACE_DIM>::Visit(CaBasedCellPopulation<SPACE_DIM>* pCellPopulation)
{
    VisitAnyPopulation(pCellPopulation);
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
void CellMutationStatesCountWriter<ELEMENT_DIM, SPACE_DIM>::Visit(NodeBasedCellPopulation<SPACE_DIM>* pCellPopulation)
{
    VisitAnyPopulation(pCellPopulation);
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
void CellMutationStatesCountWriter<ELEMENT_DIM, SPACE_DIM>::Visit(PottsBasedCellPopulation<SPACE_DIM>* pCellPopulation)
{
    VisitAnyPopulation(pCellPopulation);
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
void CellMutationStatesCountWriter<ELEMENT_DIM, SPACE_DIM>::Visit(VertexBasedCellPopulation<SPACE_DIM>* pCellPopulation)
{
    VisitAnyPopulation(pCellPopulation);
}

// Explicit instantiation
template class CellMutationStatesCountWriter<1,1>;
template class CellMutationStatesCountWriter<1,2>;
template class CellMutationStatesCountWriter<2,2>;
template class CellMutationStatesCountWriter<1,3>;
template class CellMutationStatesCountWriter<2,3>;
template class CellMutationStatesCountWriter<3,3>;

#include "SerializationExportWrapperForCpp.hpp"
// Declare identifier for the serializer
EXPORT_TEMPLATE_CLASS_ALL_DIMS(CellMutationStatesCountWriter)