#include <CellMutationStatesCountWriter.hpp>
Inherits AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM >.
Public Member Functions | |
CellMutationStatesCountWriter () | |
virtual void | WriteHeader (AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation) |
void | VisitAnyPopulation (AbstractCellPopulation< SPACE_DIM, SPACE_DIM > *pCellPopulation) |
virtual void | Visit (MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation) |
virtual void | Visit (CaBasedCellPopulation< SPACE_DIM > *pCellPopulation) |
virtual void | Visit (NodeBasedCellPopulation< SPACE_DIM > *pCellPopulation) |
virtual void | Visit (PottsBasedCellPopulation< SPACE_DIM > *pCellPopulation) |
virtual void | Visit (VertexBasedCellPopulation< SPACE_DIM > *pCellPopulation) |
Private Member Functions | |
template<class Archive > | |
void | serialize (Archive &archive, const unsigned int version) |
Friends | |
class | boost::serialization::access |
A class written using the visitor pattern for writing cell mutations states from a cell population to file.
Definition at line 45 of file CellMutationStatesCountWriter.hpp.
CellMutationStatesCountWriter< ELEMENT_DIM, SPACE_DIM >::CellMutationStatesCountWriter | ( | ) | [inline] |
Default constructor.
Definition at line 45 of file CellMutationStatesCountWriter.cpp.
void CellMutationStatesCountWriter< ELEMENT_DIM, SPACE_DIM >::serialize | ( | Archive & | archive, | |
const unsigned int | version | |||
) | [inline, private] |
Serialize the object and its member variables.
archive | the archive | |
version | the current version of this class |
Reimplemented from AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 57 of file CellMutationStatesCountWriter.hpp.
void CellMutationStatesCountWriter< ELEMENT_DIM, SPACE_DIM >::Visit | ( | VertexBasedCellPopulation< SPACE_DIM > * | pCellPopulation | ) | [inline, virtual] |
Visit the population and write the number of cells in the population that have each mutation state.
Outputs a line of tab-separated values of the form: [num mutation state 0] [num mutation state 1] [num mutation state 2] ...
where [num mutation state 0] denotes the number of cells in the population that have the mutation state with index 0 in the registry of cell properties, and so on. These counts are computed through the cell population method GetCellMutationStateCount(). The ordering of mutation states is usually specified by the cell population method SetDefaultCellMutationStateAndProliferativeTypeOrdering().
This line is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.
pCellPopulation | a pointer to the VertexBasedCellPopulation to visit. |
Implements AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 120 of file CellMutationStatesCountWriter.cpp.
References CellMutationStatesCountWriter< ELEMENT_DIM, SPACE_DIM >::VisitAnyPopulation().
void CellMutationStatesCountWriter< ELEMENT_DIM, SPACE_DIM >::Visit | ( | PottsBasedCellPopulation< SPACE_DIM > * | pCellPopulation | ) | [inline, virtual] |
Visit the population and write the number of cells in the population that have each mutation state.
Outputs a line of tab-separated values of the form: [num mutation state 0] [num mutation state 1] [num mutation state 2] ...
where [num mutation state 0] denotes the number of cells in the population that have the mutation state with index 0 in the registry of cell properties, and so on. These counts are computed through the cell population method GetCellMutationStateCount(). The ordering of mutation states is usually specified by the cell population method SetDefaultCellMutationStateAndProliferativeTypeOrdering().
This line is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.
pCellPopulation | a pointer to the PottsBasedCellPopulation to visit. |
Implements AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 114 of file CellMutationStatesCountWriter.cpp.
References CellMutationStatesCountWriter< ELEMENT_DIM, SPACE_DIM >::VisitAnyPopulation().
void CellMutationStatesCountWriter< ELEMENT_DIM, SPACE_DIM >::Visit | ( | NodeBasedCellPopulation< SPACE_DIM > * | pCellPopulation | ) | [inline, virtual] |
Visit the population and write the number of cells in the population that have each mutation state.
Outputs a line of tab-separated values of the form: [num mutation state 0] [num mutation state 1] [num mutation state 2] ...
where [num mutation state 0] denotes the number of cells in the population that have the mutation state with index 0 in the registry of cell properties, and so on. These counts are computed through the cell population method GetCellMutationStateCount(). The ordering of mutation states is usually specified by the cell population method SetDefaultCellMutationStateAndProliferativeTypeOrdering().
This line is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.
pCellPopulation | a pointer to the NodeBasedCellPopulation to visit. |
Implements AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 108 of file CellMutationStatesCountWriter.cpp.
References CellMutationStatesCountWriter< ELEMENT_DIM, SPACE_DIM >::VisitAnyPopulation().
void CellMutationStatesCountWriter< ELEMENT_DIM, SPACE_DIM >::Visit | ( | CaBasedCellPopulation< SPACE_DIM > * | pCellPopulation | ) | [inline, virtual] |
Visit the population and write the number of cells in the population that have each mutation state.
Outputs a line of tab-separated values of the form: [num mutation state 0] [num mutation state 1] [num mutation state 2] ...
where [num mutation state 0] denotes the number of cells in the population that have the mutation state with index 0 in the registry of cell properties, and so on. These counts are computed through the cell population method GetCellMutationStateCount(). The ordering of mutation states is usually specified by the cell population method SetDefaultCellMutationStateAndProliferativeTypeOrdering().
This line is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.
pCellPopulation | a pointer to the CaBasedCellPopulation to visit. |
Implements AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 102 of file CellMutationStatesCountWriter.cpp.
References CellMutationStatesCountWriter< ELEMENT_DIM, SPACE_DIM >::VisitAnyPopulation().
void CellMutationStatesCountWriter< ELEMENT_DIM, SPACE_DIM >::Visit | ( | MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM > * | pCellPopulation | ) | [inline, virtual] |
Visit the population and write the number of cells in the population that have each mutation state.
Outputs a line of tab-separated values of the form: [num mutation state 0] [num mutation state 1] [num mutation state 2] ...
where [num mutation state 0] denotes the number of cells in the population that have the mutation state with index 0 in the registry of cell properties, and so on. These counts are computed through the cell population method GetCellMutationStateCount(). The ordering of mutation states is usually specified by the cell population method SetDefaultCellMutationStateAndProliferativeTypeOrdering().
This line is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.
pCellPopulation | a pointer to the MeshBasedCellPopulation to visit. |
Implements AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 88 of file CellMutationStatesCountWriter.cpp.
References PetscTools::AmMaster(), AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::GetCellMutationStateCount(), and AbstractCellBasedWriter< ELEMENT_DIM, SPACE_DIM >::mpOutStream.
void CellMutationStatesCountWriter< ELEMENT_DIM, SPACE_DIM >::VisitAnyPopulation | ( | AbstractCellPopulation< SPACE_DIM, SPACE_DIM > * | pCellPopulation | ) | [inline] |
A general method for writing to any population.
pCellPopulation | the population to write |
Definition at line 74 of file CellMutationStatesCountWriter.cpp.
References PetscTools::AmMaster(), AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::GetCellMutationStateCount(), and AbstractCellBasedWriter< ELEMENT_DIM, SPACE_DIM >::mpOutStream.
Referenced by CellMutationStatesCountWriter< ELEMENT_DIM, SPACE_DIM >::Visit().
void CellMutationStatesCountWriter< ELEMENT_DIM, SPACE_DIM >::WriteHeader | ( | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > * | pCellPopulation | ) | [inline, virtual] |
Overridden WriteHeader() method.
Write the header to file.
pCellPopulation | a pointer to the population to be written. |
Reimplemented from AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 51 of file CellMutationStatesCountWriter.cpp.
References PetscTools::AmMaster(), AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::GetCellPropertyRegistry(), AbstractCellBasedWriter< ELEMENT_DIM, SPACE_DIM >::mpOutStream, AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::SetDefaultCellMutationStateAndProliferativeTypeOrdering(), and AbstractCellBasedWriter< ELEMENT_DIM, SPACE_DIM >::WriteNewline().
friend class boost::serialization::access [friend] |
Needed for serialization.
Reimplemented from AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 49 of file CellMutationStatesCountWriter.hpp.