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| ApcOneHitCellMutationState | CryptStatistics | LinearBasisFunction | QuadraticMesh |
| AbstractAlgebraicContractionModel | ApcTwoHitCellMutationState | CuboidMeshConstructor | LinearBasisFunction< 0 > | QuadraticMeshHelper |
| AbstractAssemblerSolverHybrid | ApoptoticCellKiller | CvodeAdaptor | LinearParabolicPdeSystemWithCoupledOdeSystemSolver | QuadraturePointsGroup |
| AbstractBackwardEulerCardiacCell | ApoptoticCellProperty | CvodeData_ | LinearSpringWithVariableSpringConstantsForce |
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| AbstractBackwardEulerCardiacCell< 0u > | ArchiveLocationInfo | Cylindrical2dMesh | LinearSystem | RadialSloughingCellKiller |
| AbstractBidomainSolver | ArchiveOpener | Cylindrical2dNodesOnlyMesh | LogFile | RampedQuarterStimulusCellFactory |
| AbstractBoundaryCondition | AveragedSourcePde | Cylindrical2dVertexMesh | LuoRudySpiralWaveCellFactory | RandomCellKiller |
| AbstractBoundaryConditionsContainer | AxisymmetricConductivityTensors | CylindricalHoneycombMeshGenerator |
| RandomDirectionVertexBasedDivisionRule |
| AbstractCachedMeshReader |
| CylindricalHoneycombVertexMeshGenerator | MassMatrixAssembler | RandomNumberGenerator |
| AbstractCardiacCell | BackwardEulerIvpOdeSolver |
| MechanicsEventHandler | RegularStimulus |
| AbstractCardiacCellFactory | badsubseg | DataAtQuadraturePoint_ | MemfemMeshReader | RegularStimulusZeroNetCharge |
| AbstractCardiacCellInterface | badtriang | DataWriterVariable | memorypool | RelativeTo |
| AbstractCardiacCellWithModifiers | BathCellFactory | DefaultCellProliferativeType | mesh | ReplicatableVector |
| AbstractCardiacFeVolumeIntegralAssembler | behavior | DeltaNotchCellCycleModel | MeshalyzerMeshWriter | RepulsionForce |
| AbstractCardiacMechanicsSolver | BetaCateninOneHitCellMutationState | DeltaNotchOdeSystem | MeshBasedCellPopulation | RungeKutta2IvpOdeSolver |
| AbstractCardiacMechanicsSolverInterface | BidomainAssembler | DeltaNotchTrackingModifier | MeshBasedCellPopulationWithGhostNodes | RungeKutta4IvpOdeSolver |
| AbstractCardiacProblem | BidomainCorrectionTermAssembler | DiagonalVertexBasedDivisionRule | MeshEventHandler | RungeKuttaFehlbergIvpOdeSolver |
| AbstractCardiacTissue | BidomainMassMatrixAssembler | DifferentialAdhesionPottsUpdateRule | MeshPottsWriterIterators |
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| AbstractCaUpdateRule | BidomainNeumannSurfaceTermAssembler | DifferentiatedCellProliferativeType | MeshWriterIterators | S1S2Stimulus |
| AbstractCellBasedSimulation | BidomainProblem | DiffusionCaUpdateRule | Mirams2010WntOdeSystem | SchmidCostaExponentialLaw2d |
| AbstractCellBasedSimulationModifier | BidomainSolver | DiffusionForce | MixedDimensionMesh | SerializableSingleton |
| AbstractCellBasedTestSuite | BidomainTissue | DiscreteSystemForceCalculator | MockEulerIvpOdeSolver | ShortAxisVertexBasedDivisionRule |
| AbstractCellBasedWithTimingsTestSuite | BidomainWithBathAssembler | DistanceMapCalculator | MonodomainAssembler | SimpleDataWriter |
| AbstractCellBasedWriter | BidomainWithBathProblem | DistributedBoxCollection | MonodomainCorrectionTermAssembler | SimpleLinearEllipticSolver |
| AbstractCellCycleModel | BoundaryConditionsContainer | DistributedQuadraticMesh | MonodomainProblem | SimpleLinearParabolicSolver |
| AbstractCellCycleModelOdeSolver | BoundaryElement | DistributedTetrahedralMesh | MonodomainSolver | SimpleNewtonNonlinearSolver |
| AbstractCellKiller | BoundaryNodeWriter | DistributedTetrahedralMeshPartitionType | MonodomainStiffnessMatrixAssembler | SimpleNonlinearEllipticSolver |
| AbstractCellMutationState | Box | DistributedVector | MonodomainTissue | SimpleOxygenBasedCellCycleModel |
| AbstractCellPopulation | BoxCollection | DistributedVectorException | MooneyRivlinMaterialLaw | SimplePetscNonlinearSolver |
| AbstractCellPopulationBoundaryCondition | BuskeAdhesiveForce | DistributedVectorFactory | MultiStimulus | SimpleStimulus |
| AbstractCellPopulationCountWriter | BuskeCompressionForce | DummyModifier | MutableElement | SimpleTargetAreaModifier |
| AbstractCellPopulationWriter | BuskeElasticForce | DynamicCellModelLoader | MutableElement< 1, SPACE_DIM > | SimpleUniformSourcePde |
| AbstractCellProliferativeType |
| DynamicModelLoaderRegistry | MutableMesh | SimpleWntCellCycleModel |
| AbstractCellProperty | CaBasedCellPopulation |
| MutableVertexMesh | SimulationTime |
| AbstractCellWriter | CARDIAC_CELL | TetrahedralMesh::EdgeIterator |
| SingleOdeWntCellCycleModel |
| AbstractCentreBasedCellPopulation | CardiacElectroMechanicsProblem | ELASTICITY_SOLVER | NagaiHondaDifferentialAdhesionForce | SingleTraceOutputModifier |
| AbstractChasteRegion | CardiacElectroMechProbRegularGeom | Electrodes | NagaiHondaForce | SloughingCellKiller |
| AbstractCompressibleMaterialLaw | CardiacNewtonSolver | ElectrodesStimulusFactory | Nash2004ContractionModel | SolidMechanicsProblemDefinition |
| AbstractConductivityModifier | CardiacSimulation | ElectroMechanicsProblemDefinition | NashHunterPoleZeroLaw | SpaceConvergenceTester |
| AbstractConductivityTensors | CardiacSimulationArchiver | Element | NaturalNeumannSurfaceTermAssembler | SphereGeometryBoundaryCondition |
| AbstractContinuumMechanicsAssembler | Cell | ElementAndWeights | NhsContractionModel | splaynode |
| AbstractContinuumMechanicsSolver | CellAgesWriter | ElementData | NhsModelWithBackwardSolver | MeshBasedCellPopulation::SpringIterator |
| AbstractContractionCellFactory | CellAncestor | AbstractTetrahedralMesh::ElementIterator | Node | SteadyStateRestitutionStimulus |
| AbstractContractionModel | CellAncestorWriter | AbstractMeshReader::ElementIterator | NodeAttributes | SteadyStateRunner |
| AbstractConvergenceTester | CellBasedEventHandler | enable_shared_from_this (boost) | NodeBasedCellPopulation | StemCellProliferativeType |
| AbstractCorrectionTermAssembler | CellBasedPdeHandler | EulerIvpOdeSolver | NodeBasedCellPopulationWithBuskeUpdate | StiffnessMatrixAssembler |
| AbstractCryptStatistics | CellBasedPdeHandlerOnCuboid | event | NodeBasedCellPopulationWithParticles | StimulusBoundaryCondition |
| AbstractCvodeCell | CellBasedPdeSolver | AbstractLookupTableCollection::EventHandler | AbstractMeshReader::NodeIterator | StochasticDurationCellCycleModel |
| AbstractCvodeSystem | CellBasedSimulationArchiver | Exception | AbstractMesh::NodeIterator | StochasticDurationGenerationBasedCellCycleModel |
| AbstractDataReader | CellBetaCateninWriter | ExecutableSupport | NodeLocationWriter | StochasticOxygenBasedCellCycleModel |
| AbstractDataWriter | CellCycleModelOdeHandler | ExplicitCardiacMechanicsSolver | NodeMap | StochasticWntCellCycleModel |
| AbstractDynamicallyLoadableEntity | CellCycleModelOdeSolver | ExponentiallyDistributedStochasticDurationGenerationBasedCellCycleModel | NodePartitioner | StokesFlowAssembler |
| AbstractDynamicLinearPdeSolver | CellCycleModelOdeSolver< CELL_CYCLE_MODEL, BackwardEulerIvpOdeSolver > | ExponentialMaterialLaw | NodesOnlyMesh | StokesFlowPreconditionerAssembler |
| AbstractElement | CellCycleModelProteinConcentrationsWriter | ExtendedBidomainAssembler | NodeVelocityWriter | StokesFlowProblemDefinition |
| AbstractExtendedBidomainSolver | CellData | ExtendedBidomainMassMatrixAssembler | NonCachedTetrahedralMesh | StokesFlowSolver |
| AbstractFeAssemblerCommon | CellId | ExtendedBidomainNeumannSurfaceTermAssembler | noncopyable (boost) | StreeterFibreGenerator |
| AbstractFeAssemblerInterface | CellIdWriter | ExtendedBidomainProblem | NonlinearElasticityTools | StressPerElementWriter |
| AbstractFeCableIntegralAssembler | CellLabel | ExtendedBidomainSolver | NonPhysiologicalContractionModel | DistributedVector::Stripe |
| AbstractFeSurfaceIntegralAssembler | CellLabelWriter | ExtendedBidomainTissue | normal_distribution_v156 (boost::random) | SurfaceAreaConstraintPottsUpdateRule |
| AbstractFeVolumeIntegralAssembler | CellLocationIndexWriter |
| normal_table (boost::random::detail) |
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| AbstractFileComparison | CellMLLoader | FactorModifier | null_deleter | T2SwapCellKiller |
| AbstractForce | CellMLToSharedLibraryConverter | FakeBathCell | NumericFileComparison | TargetedCellKiller |
| AbstractFunctionalCalculator | CellMutationStatesCountWriter | FakeBathContractionModel |
| CxxTest::TestSuite |
| AbstractGeneralizedRushLarsenCardiacCell | CellMutationStatesWriter | FarhadifarForce | ObjectCommunicator | TetrahedralMesh |
| AbstractHdf5Access | CellPopulationAreaWriter | FarhadifarTypeModifier | OdeConvergenceTester | TimeModifier |
| AbstractHdf5Converter | CellPopulationElementWriter | FemlabMeshReader | OdeLinearSystemSolver | Timer |
| AbstractIncompressibleMaterialLaw | CellProliferativePhasesCountWriter | FibreConverter | OdePdeConvergenceTester | TimeStepper |
| AbstractIsotropicCompressibleMaterialLaw | CellProliferativePhasesWriter | FibreReader | OdeSolution | Toroidal2dVertexMesh |
| AbstractIsotropicIncompressibleMaterialLaw | CellProliferativeTypesCountWriter | FibreWriter | OdeSystemForCoupledHeatEquation | ToroidalHoneycombVertexMeshGenerator |
| AbstractIvpOdeSolver | CellProliferativeTypesWriter | FileComparison | OdeSystemForCoupledHeatEquationWithSource | TransitCellProliferativeType |
| AbstractLinearEllipticPde | CellProperties | FileFinder | OdeSystemInformation | TrianglesMeshReader |
| AbstractLinearParabolicPde | CellPropertyCollection | XmlTools::Finalizer | OffLatticeSimulation | TrianglesMeshWriter |
| AbstractLinearParabolicPdeSystemForCoupledOdeSystem | CellPropertyRegistry | FineCoarseMeshPair | OnLatticeSimulation | TysonNovak2001OdeSystem |
| AbstractLinearPdeSolver | CellRadiusWriter | FitzHughNagumo1961OdeSystem | OperatorSplittingMonodomainSolver | TysonNovakCellCycleModel |
| AbstractLookupTableCollection | CellsGenerator | FixedDurationGenerationBasedCellCycleModel | OrthotropicConductivityTensors |
|
| AbstractMaterialLaw | CellVolumesWriter | FixedModifier | osub | unit_normal_distribution (boost::random::detail) |
| AbstractMesh | CellwiseDataGradient | flipstacker | otri |
|
| AbstractMeshReader | CellwiseOdeSystemInformation | FourthOrderTensor | OutputDirectoryFifoQueue | VanLeeuwen2009WntSwatCellCycleModelHypothesisOne |
| AbstractMeshWriter | CellwiseSourcePde | FunctionalBoundaryCondition | OutputFileHandler | VanLeeuwen2009WntSwatCellCycleModelHypothesisTwo |
| AbstractModifier | ChasteBuildInfo |
|
| VanLeeuwen2009WntSwatCellCycleOdeSystem |
| AbstractNonlinearAssemblerSolverHybrid | ChasteCuboid | GammaDistributedStochasticDurationCellCycleModel | pack< void(T)> | CombinedOdeSystem::VariableParameterMap |
| AbstractNonlinearElasticitySolver | ChasteEllipsoid | GaussianQuadratureRule | PapillaryFibreCalculator | version< AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > > (boost::serialization) |
| AbstractNonlinearEllipticPde | ChasteNodesList | GeneralisedLinearSpringForce | ParallelCellsGenerator | version< AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM > > (boost::serialization) |
| AbstractNonlinearSolver | ChastePoint | GeneralPlaneStimulusCellFactory | ParallelColumnDataWriter | version< AbstractChasteRegion< SPACE_DIM > > (boost::serialization) |
| AbstractOdeBasedCellCycleModel | ChastePoint< 0 > | GenericEventHandler | normal_distribution_v156::param_type (boost::random) | version< AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > > (boost::serialization) |
| AbstractOdeBasedContractionModel | ChastePosixPathFixer | CxxTest::GlobalFixture | PCBlockDiagonal | VertexBasedCellPopulation |
| AbstractOdeSystem | ChemotacticForce | GmshMeshReader | PCBlockDiagonal::PCBlockDiagonalContext | VertexCryptBoundaryForce |
| AbstractOdeSystemForCoupledPdeSystem | ChemotaxisPottsUpdateRule | GmshTypes | PCLDUFactorisation | VertexElement |
| AbstractOdeSystemInformation | DistributedVector::Chunk | GRL1IvpOdeSolver | PCLDUFactorisation::PCLDUFactorisationContext | VertexElement< 1, SPACE_DIM > |
| AbstractOdeSystemWithAnalyticJacobian | Citations | GRL2IvpOdeSolver | PCTwoLevelsBlockDiagonal | VertexElementData |
| AbstractOffLatticeCellPopulation | CmguiDeformedSolutionsWriter |
| PCTwoLevelsBlockDiagonal::PCTwoLevelsBlockDiagonalContext | VertexMesh::VertexElementIterator |
| AbstractOneStepIvpOdeSolver | CmguiMeshWriter | Hdf5DataReader | PdeAndBoundaryConditions | VertexElementMap |
| AbstractOnLatticeCellPopulation | CML_noble_varghese_kohl_noble_1998_basic_with_sac | Hdf5DataWriter | PdeConvergenceTester | VertexMesh |
| AbstractOutputModifier | ColumnDataReader | Hdf5ToCmguiConverter | PdeSimulationTime | VertexMeshReader |
| AbstractParameterisedSystem | ColumnDataWriter | Hdf5ToMeshalyzerConverter | PetscMatTools | VertexMeshWriter |
| AbstractPerElementWriter | CombinedOdeSystem | Hdf5ToTxtConverter | PetscSetup | VertexT1SwapLocationsWriter |
| AbstractPottsUpdateRule | CombinedOdeSystemInformation | Hdf5ToVtkConverter | PetscSetupUtils | VertexT2SwapLocationsWriter |
| AbstractPurkinjeCellFactory | CommandLineArguments | Hdf5ToXdmfConverter | PetscTools | VertexT3SwapLocationsWriter |
| AbstractRushLarsenCardiacCell | CommandLineArgumentsMocker | HeartConfig | PetscVecTools | VoltageInterpolaterOntoMechanicsMesh |
| AbstractSimpleCellCycleModel | CompareDoubles | HeartConfigRelatedCellFactory | PlaneBasedCellKiller | VolumeConstraintPottsUpdateRule |
| AbstractSimpleGenerationBasedCellCycleModel | CompressibleExponentialLaw | HeartEventHandler | PlaneBoundaryCondition | VolumeDependentAveragedSourcePde |
| AbstractStaticLinearPdeSolver | CompressibleMooneyRivlinMaterialLaw | HeartFileFinder | PlaneStimulusCellFactory | VolumeTrackingModifier |
| AbstractSteadyStateRunner | CompressibleNonlinearElasticitySolver | HeartGeometryInformation | PoleZeroMaterialLaw | VoronoiDataWriter |
| AbstractStimulusFactory | ConstantActiveTension | HeartRegionCode | PolynomialMaterialLaw3d | VtkMeshReader |
| AbstractStimulusFunction | ConstBoundaryCondition | HeterotypicBoundaryLengthWriter | PostProcessingWriter | VtkMeshWriter |
| AbstractTargetAreaModifier | ContactInhibitionCellCycleModel | HeunIvpOdeSolver | PottsBasedCellPopulation | VtkNonlinearElasticitySolutionWriter |
| AbstractTetrahedralElement | Node::ContainingBoundaryElementIterator | HoneycombMeshGenerator | PottsElement |
|
| AbstractTetrahedralElement< 0, SPACE_DIM > | Node::ContainingElementIterator | HoneycombVertexMeshGenerator | PottsElementData | Warnings |
| AbstractTetrahedralMesh | ContinuumMechanicsNeumannBcsAssembler |
| PottsMesh::PottsElementIterator | WelikyOsterForce |
| AbstractTetrahedralMeshWriter | ContinuumMechanicsProblemDefinition | Identifiable | PottsMesh | WildTypeCellMutationState |
| AbstractTimeAdaptivityController | ContractionModelInputParameters_ | ImplicitCardiacMechanicsSolver | PottsMeshGenerator | WntCellCycleModel |
| AbstractTwoBodyInteractionForce | CorriasBuistICCModified | IncompressibleNonlinearElasticitySolver | PottsMeshReader | WntCellCycleOdeSystem |
| AbstractUntemplatedCardiacProblem | CorriasBuistSMCModified | CombinedOdeSystemInformation::InstancePointers | PottsMeshWriter | WntConcentration |
| AbstractUntemplatedConvergenceTester | CreateElectricsProblem | IsolatedLabelledCellKiller | ProcessSpecificArchive |
|
| AbstractUntemplatedParameterisedSystem | CreateElectricsProblem< DIM, 1u > | DistributedVector::Iterator | ProgressReporter | XdmfMeshWriter |
| AbstractVanLeeuwen2009WntSwatCellCycleModel | CreateElectricsProblem< DIM, 2u > | AbstractCellPopulation::Iterator | PropagationPropertiesCalculator | XmlTools |
| AbstractVertexBasedDivisionRule | CryptCellsGenerator | iterator_facade (boost) | PseudoEcgCalculator | XmlTransforms |
| AbstractWntOdeBasedCellCycleModel | CryptProjectionForce |
| PurkinjeVentricularJunctionStimulus |
|
| ActivationOutputModifier | CryptProjectionStatistics | Kerchoffs2003ContractionModel |
| ZeroNetChargeElectrodes |
| AdhesionPottsUpdateRule | CryptSimulation1d |
| QuadraticBasisFunction | ZeroStimulus |
| Alarcon2004OxygenBasedCellCycleModel | CryptSimulation2d | LabelBasedContractionCellFactory | QuadraticBasisFunction< 0 > | ZeroStimulusCellFactory |
| Alarcon2004OxygenBasedCellCycleOdeSystem | CryptSimulationBoundaryCondition | LessThanNode |
