AbstractElement< ELEMENT_DIM, SPACE_DIM > Class Template Reference

#include <AbstractElement.hpp>

Inherited by AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >, MutableElement< ELEMENT_DIM, SPACE_DIM >, and MutableElement< DIM, DIM >.

Collaboration diagram for AbstractElement< ELEMENT_DIM, SPACE_DIM >:
Collaboration graph
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List of all members.

Public Member Functions

 AbstractElement (unsigned index, const std::vector< Node< SPACE_DIM > * > &rNodes)
 AbstractElement (unsigned index=INDEX_IS_NOT_USED)
virtual ~AbstractElement ()
virtual void UpdateNode (const unsigned &rIndex, Node< SPACE_DIM > *pNode)=0
void ReplaceNode (Node< SPACE_DIM > *pOldNode, Node< SPACE_DIM > *pNewNode)
virtual void MarkAsDeleted ()=0
virtual void RegisterWithNodes ()=0
double GetNodeLocation (unsigned localIndex, unsigned dimension) const
c_vector< double, SPACE_DIM > GetNodeLocation (unsigned localIndex) const
unsigned GetNodeGlobalIndex (unsigned localIndex) const
Node< SPACE_DIM > * GetNode (unsigned localIndex) const
unsigned GetNumNodes () const
void AddNode (Node< SPACE_DIM > *pNode)
bool IsDeleted () const
unsigned GetIndex () const
void SetIndex (unsigned index)
bool GetOwnership () const
void SetOwnership (bool ownership)
void Flag ()
void Unflag ()
bool IsFlagged () const
void SetAttribute (double attribute)
double GetAttribute ()
unsigned GetUnsignedAttribute ()

Protected Attributes

std::vector< Node< SPACE_DIM > * > mNodes
unsigned mIndex
double mAttribute
bool mIsDeleted
bool mOwnership
bool mFlag

Detailed Description

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
class AbstractElement< ELEMENT_DIM, SPACE_DIM >

An abstract element class for use in finite element meshes.

Definition at line 54 of file AbstractElement.hpp.

Constructor & Destructor Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
AbstractElement< ELEMENT_DIM, SPACE_DIM >::AbstractElement ( unsigned  index,
const std::vector< Node< SPACE_DIM > * > &  rNodes 
) [inline]

Constructor which takes in a vector of nodes.

Parameters:
index the index of the element in the mesh
rNodes the nodes owned by the element

Definition at line 48 of file AbstractElement.cpp.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
AbstractElement< ELEMENT_DIM, SPACE_DIM >::AbstractElement ( unsigned  index = INDEX_IS_NOT_USED  )  [inline]

Default constructor, which doesn't add any nodes: they must be added later.

Parameters:
index the index of the element in the mesh (defaults to INDEX_IS_NOT_USED)

Definition at line 63 of file AbstractElement.cpp.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
virtual AbstractElement< ELEMENT_DIM, SPACE_DIM >::~AbstractElement (  )  [inline, virtual]

Virtual destructor, since this class has virtual methods. Does nothing special.

Definition at line 100 of file AbstractElement.hpp.

Member Function Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
void AbstractElement< ELEMENT_DIM, SPACE_DIM >::AddNode ( Node< SPACE_DIM > *  pNode  )  [inline]

Add a node to this element.

Parameters:
pNode pointer to the new node

Definition at line 127 of file AbstractElement.cpp.

References AbstractElement< ELEMENT_DIM, SPACE_DIM >::mNodes.

Referenced by QuadraticMeshHelper< DIM >::AddNodeToBoundaryElement().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
void AbstractElement< ELEMENT_DIM, SPACE_DIM >::Flag (  )  [inline]

Mark the element as flagged.

Definition at line 163 of file AbstractElement.cpp.

References AbstractElement< ELEMENT_DIM, SPACE_DIM >::mFlag.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
double AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetAttribute (  )  [inline]
Returns:
the element's attribute value

Definition at line 187 of file AbstractElement.cpp.

References AbstractElement< ELEMENT_DIM, SPACE_DIM >::mAttribute.

Referenced by AbstractPurkinjeCellFactory< ELEMENT_DIM, SPACE_DIM >::CreateJunction(), AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >::GetNextCableElement(), AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >::GetNextElement(), and AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetUnsignedAttribute().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
unsigned AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetIndex (  )  const [inline]
Returns:
the index of this element

Definition at line 139 of file AbstractElement.cpp.

References AbstractElement< ELEMENT_DIM, SPACE_DIM >::mIndex.

Referenced by AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >::AbstractCorrectionTermAssembler(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::AddElement(), MutableMesh< ELEMENT_DIM, SPACE_DIM >::AddElement(), PottsMesh< DIM >::AddElement(), NagaiHondaForce< DIM >::AddForceContribution(), FarhadifarForce< DIM >::AddForceContribution(), ContinuumMechanicsNeumannBcsAssembler< DIM >::AssembleOnBoundaryElement(), AbstractNonlinearElasticitySolver< DIM >::AssembleOnBoundaryElement(), AbstractNonlinearElasticitySolver< DIM >::AssembleOnBoundaryElementForPressureOnDeformedBc(), AbstractFeVolumeIntegralAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >::AssembleOnElement(), IncompressibleNonlinearElasticitySolver< DIM >::AssembleOnElement(), CompressibleNonlinearElasticitySolver< DIM >::AssembleOnElement(), AbstractContinuumMechanicsAssembler< DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX >::AssembleOnElement(), AbstractFeSurfaceIntegralAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::AssembleOnSurfaceElement(), MutableMesh< ELEMENT_DIM, SPACE_DIM >::CheckIsVoronoi(), ElectrodesStimulusFactory< DIM >::ComputeElectrodeTotalFlux(), AveragedSourcePde< DIM >::ComputeLinearInUCoeffInSourceTerm(), MonodomainStiffnessMatrixAssembler< ELEMENT_DIM, SPACE_DIM >::ComputeMatrixTerm(), ExtendedBidomainAssembler< ELEMENT_DIM, SPACE_DIM >::ComputeMatrixTerm(), BidomainAssembler< ELEMENT_DIM, SPACE_DIM >::ComputeMatrixTerm(), MutableMesh< ELEMENT_DIM, SPACE_DIM >::DeleteBoundaryNodeAt(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::DivideElementAlongGivenAxis(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::DivideElementAlongShortAxis(), AbstractContinuumMechanicsAssembler< DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX >::DoAssemble(), AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >::ElementAssemblyCriterion(), AbstractNonlinearElasticitySolver< DIM >::GetElementCentroidStrain(), AbstractCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >::Initialise(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::MutableVertexMesh(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::PerformIntersectionSwap(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::PerformT2Swap(), PottsMesh< DIM >::PottsMesh(), Cylindrical2dMesh::ReconstructCylindricalMesh(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::VertexMesh(), StreeterFibreGenerator< SPACE_DIM >::Visit(), and StressPerElementWriter< DIM >::Visit().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
Node< SPACE_DIM > * AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetNode ( unsigned  localIndex  )  const [inline]

Get the node with a given local index in this element.

Parameters:
localIndex local index of the node in this element
Returns:
a pointer to the node.

Definition at line 114 of file AbstractElement.cpp.

References AbstractElement< ELEMENT_DIM, SPACE_DIM >::mNodes.

Referenced by VertexElement< ELEMENT_DIM, SPACE_DIM >::AddFace(), NagaiHondaForce< DIM >::AddForceContribution(), FarhadifarForce< DIM >::AddForceContribution(), BoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::AddNeumannBoundaryCondition(), QuadraticMeshHelper< DIM >::AddNodeToBoundaryElement(), BidomainProblem< DIM >::AnalyseMeshForBath(), AbstractNonlinearElasticitySolver< DIM >::AssembleOnBoundaryElementForPressureOnDeformedBc(), AbstractFeCableIntegralAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >::AssembleOnCableElement(), AbstractFeVolumeIntegralAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >::AssembleOnElement(), AbstractContinuumMechanicsAssembler< DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX >::AssembleOnElement(), AbstractFeSurfaceIntegralAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::AssembleOnSurfaceElement(), AbstractFunctionalCalculator< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::CalculateOnElement(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::CalculateUnitNormalToFaceWithArea(), MutableMesh< ELEMENT_DIM, SPACE_DIM >::CheckIsVoronoi(), MixedDimensionMesh< ELEMENT_DIM, SPACE_DIM >::ConstructFromMeshReader(), MutableMesh< ELEMENT_DIM, SPACE_DIM >::DeleteBoundaryNodeAt(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::DivideElement(), PottsMesh< DIM >::DivideElement(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::DivideElementAlongGivenAxis(), CellBasedPdeHandler< DIM >::FindCoarseElementContainingCell(), StreeterFibreGenerator< SPACE_DIM >::GetAveragedThicknessLocalNode(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetNeighbouringElementIndices(), PottsMesh< DIM >::GetNeighbouringElementIndices(), PottsMesh< DIM >::GetSurfaceAreaOfElement(), MutableElement< 1, SPACE_DIM >::IsElementOnBoundary(), MutableElement< ELEMENT_DIM, SPACE_DIM >::IsElementOnBoundary(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::MutableVertexMesh(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::PerformT2Swap(), PottsMesh< DIM >::PottsMesh(), Cylindrical2dMesh::ReMesh(), FineCoarseMeshPair< DIM >::SetUpBoxes(), VertexElement< ELEMENT_DIM, SPACE_DIM >::VertexElement(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::VertexMesh(), StreeterFibreGenerator< SPACE_DIM >::Visit(), and DistanceMapCalculator< ELEMENT_DIM, SPACE_DIM >::WorkOnLocalQueue().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
unsigned AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetNodeGlobalIndex ( unsigned  localIndex  )  const [inline]

Given the local index of a node owned by this element, return the global index of the node in the mesh.

Parameters:
localIndex the node's local index in this element
Returns:
the global index

Definition at line 107 of file AbstractElement.cpp.

References AbstractElement< ELEMENT_DIM, SPACE_DIM >::mNodes.

Referenced by AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >::AbstractCorrectionTermAssembler(), QuadraticMeshHelper< DIM >::AddExtraBoundaryNodes(), VertexElement< ELEMENT_DIM, SPACE_DIM >::AddFace(), QuadraticMeshHelper< DIM >::AddNodesToBoundaryElements(), AbstractNonlinearElasticitySolver< DIM >::AssembleOnBoundaryElement(), AbstractNonlinearElasticitySolver< DIM >::AssembleOnBoundaryElementForPressureOnDeformedBc(), AbstractFeCableIntegralAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >::AssembleOnCableElement(), AbstractFeVolumeIntegralAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >::AssembleOnElement(), IncompressibleNonlinearElasticitySolver< DIM >::AssembleOnElement(), CompressibleNonlinearElasticitySolver< DIM >::AssembleOnElement(), IncompressibleNonlinearElasticitySolver< DIM >::AssembleSystem(), CompressibleNonlinearElasticitySolver< DIM >::AssembleSystem(), AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::CalculateMaximumNodeConnectivityPerProcess(), AbstractFunctionalCalculator< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::CalculateOnElement(), MutableMesh< ELEMENT_DIM, SPACE_DIM >::CheckIsVoronoi(), AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::CheckOutwardNormals(), AbstractCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >::ComputeDeformationGradientAndStretchInEachElement(), MonodomainCorrectionTermAssembler< ELEM_DIM, SPACE_DIM >::ComputeVectorTerm(), BidomainCorrectionTermAssembler< ELEM_DIM, SPACE_DIM >::ComputeVectorTerm(), CellBasedPdeHandler< DIM >::ConstructBoundaryConditionsContainer(), AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::ConstructFromMesh(), Cylindrical2dMesh::CorrectNonPeriodicMesh(), MutableMesh< ELEMENT_DIM, SPACE_DIM >::DeleteNode(), AbstractContinuumMechanicsAssembler< DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX >::DoAssemble(), AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >::ElementAssemblyCriterion(), AbstractNonlinearElasticitySolver< DIM >::GetElementCentroidStrain(), MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >::GetNeighbouringNodeIndices(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetNeighbouringNodeNotAlsoInElement(), AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >::GetNextCableElement(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetNextEdgeGradientOfElementAtNode(), AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >::GetNextElement(), MutableElement< 1, SPACE_DIM >::GetNodeLocalIndex(), MutableElement< ELEMENT_DIM, SPACE_DIM >::GetNodeLocalIndex(), CellBasedPdeHandler< DIM >::GetPdeSolutionAtPoint(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetPreviousEdgeGradientOfElementAtNode(), AbstractTetrahedralElement< 0, SPACE_DIM >::GetStiffnessMatrixGlobalIndices(), AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >::GetStiffnessMatrixGlobalIndices(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetSurfaceAreaOfElement(), VertexBasedCellPopulation< DIM >::GetTetrahedralMeshUsingVertexMesh(), QuadraticMeshHelper< DIM >::HelperMethod1(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::IdentifySwapType(), TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::EdgeIterator::operator++(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::PerformIntersectionSwap(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::PerformT2Swap(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::PerformT3Swap(), Cylindrical2dMesh::ReconstructCylindricalMesh(), AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::SetElementOwnerships(), CellwiseDataGradient< DIM >::SetupGradients(), CardiacElectroMechanicsProblem< DIM, ELEC_PROB_DIM >::Solve(), CellBasedPdeHandler< DIM >::SolvePdeAndWriteResultsToFile(), MutableMesh< ELEMENT_DIM, SPACE_DIM >::SplitEdge(), Cylindrical2dMesh::UseTheseElementsToDecideMeshing(), CellPopulationElementWriter< ELEMENT_DIM, SPACE_DIM >::Visit(), and VoltageInterpolaterOntoMechanicsMesh< DIM >::VoltageInterpolaterOntoMechanicsMesh().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
c_vector< double, SPACE_DIM > AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetNodeLocation ( unsigned  localIndex  )  const [inline]
Returns:
the location in space of one of the nodes in this element.
Parameters:
localIndex the index of the node to query, in [0,N) where N is the number of nodes in this element.

Definition at line 100 of file AbstractElement.cpp.

References AbstractElement< ELEMENT_DIM, SPACE_DIM >::mNodes.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
double AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetNodeLocation ( unsigned  localIndex,
unsigned  dimension 
) const [inline]
Returns:
a single component of the location in space of one of the nodes in this element.
Parameters:
localIndex the index of the node to query, in [0,N) where N is the number of nodes in this element.
dimension the spatial dimension to query.

Definition at line 87 of file AbstractElement.cpp.

References AbstractElement< ELEMENT_DIM, SPACE_DIM >::mNodes.

Referenced by Element< ELEMENT_DIM, SPACE_DIM >::CalculateCircumsphere(), Element< ELEMENT_DIM, SPACE_DIM >::CalculateMinMaxEdgeLengths(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::CalculateMomentsOfElement(), Element< ELEMENT_DIM, SPACE_DIM >::CalculateXi(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::DivideElementAlongGivenAxis(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::ElementIncludesPoint(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetAreaGradientOfElementAtNode(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetCentroidOfElement(), PottsMesh< DIM >::GetCentroidOfElement(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetLocalIndexForElementEdgeClosestToPoint(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetNextEdgeGradientOfElementAtNode(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetPreviousEdgeGradientOfElementAtNode(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetVolumeOfElement(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::PerformT3Swap(), and AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >::RefreshJacobian().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
unsigned AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetNumNodes (  )  const [inline]
Returns:
the number of nodes owned by this element.

Definition at line 121 of file AbstractElement.cpp.

References AbstractElement< ELEMENT_DIM, SPACE_DIM >::mNodes.

Referenced by AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >::AbstractCorrectionTermAssembler(), VertexElement< ELEMENT_DIM, SPACE_DIM >::AddFace(), NagaiHondaForce< DIM >::AddForceContribution(), FarhadifarForce< DIM >::AddForceContribution(), BidomainProblem< DIM >::AnalyseMeshForBath(), AbstractNonlinearElasticitySolver< DIM >::AssembleOnBoundaryElementForPressureOnDeformedBc(), AbstractFeCableIntegralAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >::AssembleOnCableElement(), AbstractFeVolumeIntegralAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >::AssembleOnElement(), AbstractFeSurfaceIntegralAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::AssembleOnSurfaceElement(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::CalculateMomentsOfElement(), AbstractFunctionalCalculator< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::CalculateOnElement(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::CalculateUnitNormalToFaceWithArea(), MutableMesh< ELEMENT_DIM, SPACE_DIM >::CheckIsVoronoi(), ElectrodesStimulusFactory< DIM >::ComputeElectrodeTotalFlux(), AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::ConstructFromMesh(), MixedDimensionMesh< ELEMENT_DIM, SPACE_DIM >::ConstructFromMeshReader(), MutableMesh< ELEMENT_DIM, SPACE_DIM >::DeleteBoundaryNodeAt(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::DivideEdge(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::DivideElement(), PottsMesh< DIM >::DivideElement(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::DivideElementAlongGivenAxis(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::ElementIncludesPoint(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetAreaGradientOfElementAtNode(), PottsElement< DIM >::GetAspectRatio(), StreeterFibreGenerator< SPACE_DIM >::GetAveragedThicknessLocalNode(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetCentroidOfElement(), PottsMesh< DIM >::GetCentroidOfElement(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetLocalIndexForElementEdgeClosestToPoint(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetNeighbouringElementIndices(), PottsMesh< DIM >::GetNeighbouringElementIndices(), MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >::GetNeighbouringNodeIndices(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetNeighbouringNodeNotAlsoInElement(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetNextEdgeGradientOfElementAtNode(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetPreviousEdgeGradientOfElementAtNode(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetSurfaceAreaOfElement(), PottsMesh< DIM >::GetSurfaceAreaOfElement(), VertexBasedCellPopulation< DIM >::GetTetrahedralMeshUsingVertexMesh(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetVolumeOfElement(), PottsMesh< DIM >::GetVolumeOfElement(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::IdentifySwapType(), MutableElement< 1, SPACE_DIM >::MarkAsDeleted(), MutableElement< ELEMENT_DIM, SPACE_DIM >::MarkAsDeleted(), Element< ELEMENT_DIM, SPACE_DIM >::MarkAsDeleted(), BoundaryElement< ELEMENT_DIM, SPACE_DIM >::MarkAsDeleted(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::MutableVertexMesh(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::PerformIntersectionSwap(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::PerformT2Swap(), MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::PerformT3Swap(), PottsMesh< DIM >::PottsMesh(), MutableElement< 1, SPACE_DIM >::ResetIndex(), MutableElement< ELEMENT_DIM, SPACE_DIM >::ResetIndex(), Element< ELEMENT_DIM, SPACE_DIM >::ResetIndex(), BoundaryElement< ELEMENT_DIM, SPACE_DIM >::ResetIndex(), AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::SetElementOwnerships(), CardiacElectroMechanicsProblem< DIM, ELEC_PROB_DIM >::Solve(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::VertexMesh(), CellPopulationElementWriter< ELEMENT_DIM, SPACE_DIM >::Visit(), VoltageInterpolaterOntoMechanicsMesh< DIM >::VoltageInterpolaterOntoMechanicsMesh(), and DistanceMapCalculator< ELEMENT_DIM, SPACE_DIM >::WorkOnLocalQueue().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
bool AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetOwnership (  )  const [inline]
Returns:
whether the current process owns this element.

Definition at line 151 of file AbstractElement.cpp.

References AbstractElement< ELEMENT_DIM, SPACE_DIM >::mOwnership.

Referenced by AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >::AbstractCorrectionTermAssembler(), IncompressibleNonlinearElasticitySolver< DIM >::AssembleSystem(), CompressibleNonlinearElasticitySolver< DIM >::AssembleSystem(), AbstractFeVolumeIntegralAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >::DoAssemble(), AbstractFeCableIntegralAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >::DoAssemble(), AbstractContinuumMechanicsAssembler< DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX >::DoAssemble(), and AbstractCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >::Initialise().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
unsigned AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetUnsignedAttribute (  )  [inline]

This method converts the attribute (stored as a double) to an unsigned, and throws an exception if this is not sensible.

Returns:
an unsigned attribute value.

Definition at line 193 of file AbstractElement.cpp.

References EXCEPTION, AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetAttribute(), and CompareDoubles::WithinAnyTolerance().

Referenced by AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >::AbstractCorrectionTermAssembler(), BidomainProblem< DIM >::AnalyseMeshForBath(), ExtendedBidomainMassMatrixAssembler< DIM >::ComputeMatrixTerm(), BidomainWithBathAssembler< ELEMENT_DIM, SPACE_DIM >::ComputeMatrixTerm(), BidomainMassMatrixAssembler< DIM >::ComputeMatrixTerm(), and PseudoEcgCalculator< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::ShouldSkipThisElement().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
bool AbstractElement< ELEMENT_DIM, SPACE_DIM >::IsDeleted (  )  const [inline]

Get whether the element is marked as deleted.

Returns:
mIsDeleted

Definition at line 133 of file AbstractElement.cpp.

References AbstractElement< ELEMENT_DIM, SPACE_DIM >::mIsDeleted.

Referenced by AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::ConstructFromMesh(), AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >::GetNextCableElement(), AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >::GetNextElement(), Cylindrical2dMesh::ReconstructCylindricalMesh(), and Cylindrical2dMesh::ReMesh().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
bool AbstractElement< ELEMENT_DIM, SPACE_DIM >::IsFlagged (  )  const [inline]
Returns:
whether the element is flagged.

Definition at line 175 of file AbstractElement.cpp.

References AbstractElement< ELEMENT_DIM, SPACE_DIM >::mFlag.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
virtual void AbstractElement< ELEMENT_DIM, SPACE_DIM >::MarkAsDeleted (  )  [pure virtual]

Mark the element as having been removed from the mesh. Also notify nodes in the element that it has been removed.

Implemented in BoundaryElement< ELEMENT_DIM, SPACE_DIM >, Element< ELEMENT_DIM, SPACE_DIM >, MutableElement< ELEMENT_DIM, SPACE_DIM >, MutableElement< 1, SPACE_DIM >, and MutableElement< DIM, DIM >.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
virtual void AbstractElement< ELEMENT_DIM, SPACE_DIM >::RegisterWithNodes (  )  [pure virtual]

Inform all nodes forming this element that they are in this element.

Implemented in BoundaryElement< ELEMENT_DIM, SPACE_DIM >, Element< ELEMENT_DIM, SPACE_DIM >, MutableElement< ELEMENT_DIM, SPACE_DIM >, MutableElement< 1, SPACE_DIM >, and MutableElement< DIM, DIM >.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
void AbstractElement< ELEMENT_DIM, SPACE_DIM >::ReplaceNode ( Node< SPACE_DIM > *  pOldNode,
Node< SPACE_DIM > *  pNewNode 
) [inline]

Replace one of the nodes in this element with another.

Parameters:
pOldNode pointer to the current node
pNewNode pointer to the replacement node

Definition at line 72 of file AbstractElement.cpp.

References EXCEPTION, AbstractElement< ELEMENT_DIM, SPACE_DIM >::mNodes, and AbstractElement< ELEMENT_DIM, SPACE_DIM >::UpdateNode().

Referenced by MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >::PerformT2Swap(), Cylindrical2dMesh::ReconstructCylindricalMesh(), and MutableMesh< ELEMENT_DIM, SPACE_DIM >::SplitEdge().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
void AbstractElement< ELEMENT_DIM, SPACE_DIM >::SetAttribute ( double  attribute  )  [inline]

Set an attribute (a value associated with the element)

Parameters:
attribute the value of an attribute

Definition at line 181 of file AbstractElement.cpp.

References AbstractElement< ELEMENT_DIM, SPACE_DIM >::mAttribute.

Referenced by TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::ConstructFromMeshReader(), MixedDimensionMesh< ELEMENT_DIM, SPACE_DIM >::ConstructFromMeshReader(), DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::ConstructFromMeshReader(), and PottsMesh< DIM >::ConstructFromMeshReader().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
void AbstractElement< ELEMENT_DIM, SPACE_DIM >::SetIndex ( unsigned  index  )  [inline]

Set the index of this element in the mesh.

Parameters:
index the new index

Definition at line 145 of file AbstractElement.cpp.

References AbstractElement< ELEMENT_DIM, SPACE_DIM >::mIndex.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
void AbstractElement< ELEMENT_DIM, SPACE_DIM >::SetOwnership ( bool  ownership  )  [inline]

Set whether the current process owns this element.

Parameters:
ownership whether the current process now owns this element

Definition at line 157 of file AbstractElement.cpp.

References AbstractElement< ELEMENT_DIM, SPACE_DIM >::mOwnership.

Referenced by AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::SetElementOwnerships().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
void AbstractElement< ELEMENT_DIM, SPACE_DIM >::Unflag (  )  [inline]

Mark the element as not flagged.

Definition at line 169 of file AbstractElement.cpp.

References AbstractElement< ELEMENT_DIM, SPACE_DIM >::mFlag.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
virtual void AbstractElement< ELEMENT_DIM, SPACE_DIM >::UpdateNode ( const unsigned &  rIndex,
Node< SPACE_DIM > *  pNode 
) [pure virtual]

Update node at the given index.

Parameters:
rIndex is an local index to which node to change
pNode is a pointer to the replacement node

Implemented in BoundaryElement< ELEMENT_DIM, SPACE_DIM >, Element< ELEMENT_DIM, SPACE_DIM >, MutableElement< ELEMENT_DIM, SPACE_DIM >, MutableElement< 1, SPACE_DIM >, and MutableElement< DIM, DIM >.

Referenced by AbstractElement< ELEMENT_DIM, SPACE_DIM >::ReplaceNode().

Member Data Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
double AbstractElement< ELEMENT_DIM, SPACE_DIM >::mAttribute [protected]

An attribute (a value associated with the element)

Definition at line 65 of file AbstractElement.hpp.

Referenced by AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetAttribute(), and AbstractElement< ELEMENT_DIM, SPACE_DIM >::SetAttribute().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
bool AbstractElement< ELEMENT_DIM, SPACE_DIM >::mFlag [protected]

A flag for the use of higher level algorithms.

Definition at line 77 of file AbstractElement.hpp.

Referenced by AbstractElement< ELEMENT_DIM, SPACE_DIM >::Flag(), AbstractElement< ELEMENT_DIM, SPACE_DIM >::IsFlagged(), and AbstractElement< ELEMENT_DIM, SPACE_DIM >::Unflag().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
unsigned AbstractElement< ELEMENT_DIM, SPACE_DIM >::mIndex [protected]

The index of this element within the mesh

Definition at line 62 of file AbstractElement.hpp.

Referenced by MutableElement< 1, SPACE_DIM >::AddNode(), MutableElement< ELEMENT_DIM, SPACE_DIM >::AddNode(), PottsElement< DIM >::AddNode(), AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >::CalculateJacobian(), MutableElement< 1, SPACE_DIM >::DeleteNode(), MutableElement< ELEMENT_DIM, SPACE_DIM >::DeleteNode(), Element< ELEMENT_DIM, SPACE_DIM >::Element(), AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetIndex(), MutableElement< 1, SPACE_DIM >::MarkAsDeleted(), MutableElement< ELEMENT_DIM, SPACE_DIM >::MarkAsDeleted(), Element< ELEMENT_DIM, SPACE_DIM >::MarkAsDeleted(), BoundaryElement< ELEMENT_DIM, SPACE_DIM >::MarkAsDeleted(), MutableElement< 1, SPACE_DIM >::RegisterWithNodes(), MutableElement< ELEMENT_DIM, SPACE_DIM >::RegisterWithNodes(), Element< ELEMENT_DIM, SPACE_DIM >::RegisterWithNodes(), BoundaryElement< ELEMENT_DIM, SPACE_DIM >::RegisterWithNodes(), MutableElement< 1, SPACE_DIM >::ResetIndex(), MutableElement< ELEMENT_DIM, SPACE_DIM >::ResetIndex(), Element< ELEMENT_DIM, SPACE_DIM >::ResetIndex(), BoundaryElement< ELEMENT_DIM, SPACE_DIM >::ResetIndex(), AbstractElement< ELEMENT_DIM, SPACE_DIM >::SetIndex(), MutableElement< 1, SPACE_DIM >::UpdateNode(), MutableElement< ELEMENT_DIM, SPACE_DIM >::UpdateNode(), Element< ELEMENT_DIM, SPACE_DIM >::UpdateNode(), and BoundaryElement< ELEMENT_DIM, SPACE_DIM >::UpdateNode().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
bool AbstractElement< ELEMENT_DIM, SPACE_DIM >::mIsDeleted [protected]

Whether this element has been deleted, and hence whether its location in the mesh can be re-used.

Definition at line 71 of file AbstractElement.hpp.

Referenced by AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >::GetVolume(), AbstractElement< ELEMENT_DIM, SPACE_DIM >::IsDeleted(), MutableElement< 1, SPACE_DIM >::MarkAsDeleted(), MutableElement< ELEMENT_DIM, SPACE_DIM >::MarkAsDeleted(), Element< ELEMENT_DIM, SPACE_DIM >::MarkAsDeleted(), BoundaryElement< ELEMENT_DIM, SPACE_DIM >::MarkAsDeleted(), and AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >::RefreshJacobian().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
std::vector<Node<SPACE_DIM>*> AbstractElement< ELEMENT_DIM, SPACE_DIM >::mNodes [protected]

The nodes forming this element.

Definition at line 59 of file AbstractElement.hpp.

Referenced by AbstractTetrahedralElement< 0, SPACE_DIM >::AbstractTetrahedralElement(), AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >::AbstractTetrahedralElement(), MutableElement< 1, SPACE_DIM >::AddNode(), MutableElement< ELEMENT_DIM, SPACE_DIM >::AddNode(), AbstractElement< ELEMENT_DIM, SPACE_DIM >::AddNode(), PottsElement< DIM >::AddNode(), BoundaryElement< ELEMENT_DIM, SPACE_DIM >::BoundaryElement(), AbstractTetrahedralElement< 0, SPACE_DIM >::CalculateCentroid(), AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >::CalculateCentroid(), MutableElement< 1, SPACE_DIM >::DeleteNode(), MutableElement< ELEMENT_DIM, SPACE_DIM >::DeleteNode(), PottsElement< DIM >::GetAspectRatio(), AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetNode(), AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetNodeGlobalIndex(), MutableElement< 1, SPACE_DIM >::GetNodeLocalIndex(), MutableElement< ELEMENT_DIM, SPACE_DIM >::GetNodeLocalIndex(), AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetNodeLocation(), AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetNumNodes(), MutableElement< 1, SPACE_DIM >::IsElementOnBoundary(), MutableElement< ELEMENT_DIM, SPACE_DIM >::IsElementOnBoundary(), MutableElement< 1, SPACE_DIM >::MarkAsDeleted(), MutableElement< ELEMENT_DIM, SPACE_DIM >::MarkAsDeleted(), Element< ELEMENT_DIM, SPACE_DIM >::MarkAsDeleted(), BoundaryElement< ELEMENT_DIM, SPACE_DIM >::MarkAsDeleted(), MutableElement< 1, SPACE_DIM >::MutableElement(), MutableElement< 1, SPACE_DIM >::RegisterWithNodes(), MutableElement< ELEMENT_DIM, SPACE_DIM >::RegisterWithNodes(), Element< ELEMENT_DIM, SPACE_DIM >::RegisterWithNodes(), BoundaryElement< ELEMENT_DIM, SPACE_DIM >::RegisterWithNodes(), AbstractElement< ELEMENT_DIM, SPACE_DIM >::ReplaceNode(), MutableElement< 1, SPACE_DIM >::ResetIndex(), MutableElement< ELEMENT_DIM, SPACE_DIM >::ResetIndex(), Element< ELEMENT_DIM, SPACE_DIM >::ResetIndex(), BoundaryElement< ELEMENT_DIM, SPACE_DIM >::ResetIndex(), MutableElement< 1, SPACE_DIM >::UpdateNode(), MutableElement< ELEMENT_DIM, SPACE_DIM >::UpdateNode(), Element< ELEMENT_DIM, SPACE_DIM >::UpdateNode(), BoundaryElement< ELEMENT_DIM, SPACE_DIM >::UpdateNode(), and VertexElement< ELEMENT_DIM, SPACE_DIM >::VertexElement().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
bool AbstractElement< ELEMENT_DIM, SPACE_DIM >::mOwnership [protected]

Whether the current process owns this element.

Definition at line 74 of file AbstractElement.hpp.

Referenced by AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetOwnership(), and AbstractElement< ELEMENT_DIM, SPACE_DIM >::SetOwnership().

The documentation for this class was generated from the following files:
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