CellCycleModelProteinConcentrationsWriter< ELEMENT_DIM, SPACE_DIM > Class Template Reference

#include <CellCycleModelProteinConcentrationsWriter.hpp>

Inherits AbstractCellWriter< ELEMENT_DIM, SPACE_DIM >.

Collaboration diagram for CellCycleModelProteinConcentrationsWriter< ELEMENT_DIM, SPACE_DIM >:

[legend]

List of all members.

Public Member Functions
	CellCycleModelProteinConcentrationsWriter ()
double	GetCellDataForVtkOutput (CellPtr pCell, AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation)
virtual void	VisitCell (CellPtr pCell, AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation)
Private Member Functions
template<class Archive >
void	serialize (Archive &archive, const unsigned int version)
Friends
class	boost::serialization::access

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Detailed Description

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
class CellCycleModelProteinConcentrationsWriter< ELEMENT_DIM, SPACE_DIM >

A class written using the visitor pattern for writing cell-cycle model protein concentrations to file.

Definition at line 47 of file CellCycleModelProteinConcentrationsWriter.hpp.

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Constructor & Destructor Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

CellCycleModelProteinConcentrationsWriter< ELEMENT_DIM, SPACE_DIM >::CellCycleModelProteinConcentrationsWriter

(

)

[inline]

Default constructor.

Definition at line 41 of file CellCycleModelProteinConcentrationsWriter.cpp.

References AbstractCellWriter< ELEMENT_DIM, SPACE_DIM >::mVtkCellDataName.

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Member Function Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

double CellCycleModelProteinConcentrationsWriter< ELEMENT_DIM, SPACE_DIM >::GetCellDataForVtkOutput	(	CellPtr	pCell,
		AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *	pCellPopulation
	)			[inline, virtual]

Overridden GetCellDataForVtkOutput() method.

Get a double associated with a cell. This method reduces duplication of code between the methods VisitCell() and AddVtkData().

Parameters:

	pCell	a cell
	pCellPopulation	a pointer to the cell population owning the cell

Returns:

data associated with the cell

Implements AbstractCellWriter< ELEMENT_DIM, SPACE_DIM >.

Definition at line 48 of file CellCycleModelProteinConcentrationsWriter.cpp.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

template<class Archive >

void CellCycleModelProteinConcentrationsWriter< ELEMENT_DIM, SPACE_DIM >::serialize	(	Archive &	archive,
		const unsigned int	version
	)			[inline, private]

Serialize the object and its member variables.

Parameters:

	archive	the archive
	version	the current version of this class

Reimplemented from AbstractCellWriter< ELEMENT_DIM, SPACE_DIM >.

Definition at line 59 of file CellCycleModelProteinConcentrationsWriter.hpp.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

void CellCycleModelProteinConcentrationsWriter< ELEMENT_DIM, SPACE_DIM >::VisitCell	(	CellPtr	pCell,
		AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *	pCellPopulation
	)			[inline, virtual]

Overridden VisitCell() method.

Visit a cell and write the protein concentrations associated with its cell-cycle model, if its cell-cycle model is a subclass of AbstractOdeBasedCellCycleModel.

Outputs a line of space-separated values of the form: ...[location index] [protein 1 conc] [protein 2 conc] ... [protein n conc] ...

This is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.

Note that the "protein concentrations" refer to the solution of the ODE system that is present in the cell-cycle model. If the cell-cycle model does not inherit from AbstractOdeBasedCellCycleModel, then an exception is thrown.

Parameters:

	pCell	a pointer to a cell
	pCellPopulation	a pointer to the cell population owning the cell

Implements AbstractCellWriter< ELEMENT_DIM, SPACE_DIM >.

Definition at line 60 of file CellCycleModelProteinConcentrationsWriter.cpp.

References EXCEPTION, AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::GetLocationIndexUsingCell(), AbstractOdeBasedCellCycleModel::GetProteinConcentrations(), and AbstractCellBasedWriter< ELEMENT_DIM, SPACE_DIM >::mpOutStream.

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Friends And Related Function Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

friend class boost::serialization::access [friend]

Needed for serialization.

Reimplemented from AbstractCellWriter< ELEMENT_DIM, SPACE_DIM >.

Definition at line 51 of file CellCycleModelProteinConcentrationsWriter.hpp.

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The documentation for this class was generated from the following files:

• cell_based/src/population/writers/cell_writers/CellCycleModelProteinConcentrationsWriter.hpp
• cell_based/src/population/writers/cell_writers/CellCycleModelProteinConcentrationsWriter.cpp