AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM > Class Template Reference

#include <AbstractCorrectionTermAssembler.hpp>

Inherits AbstractCardiacFeVolumeIntegralAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM, true, false, CARDIAC >.

Collaboration diagram for AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >:
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List of all members.

Public Member Functions

 AbstractCorrectionTermAssembler (AbstractTetrahedralMesh< ELEM_DIM, SPACE_DIM > *pMesh, AbstractCardiacTissue< ELEM_DIM, SPACE_DIM > *pTissue)

Protected Member Functions

void ResetInterpolatedQuantities (void)
void IncrementInterpolatedQuantities (double phiI, const Node< SPACE_DIM > *pNode)
bool ElementAssemblyCriterion (Element< ELEM_DIM, SPACE_DIM > &rElement)

Protected Attributes

double mIionicInterp
std::vector< double > mStateVariablesAtQuadPoint
std::vector< bool > mElementsCanDoSvi

Detailed Description

template<unsigned ELEM_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>
class AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >

A parent class for MonodomainCorrectionTermAssembler and BidomainCorrectionTermAssembler, used for state variable interpolation (SVI).

Definition at line 49 of file AbstractCorrectionTermAssembler.hpp.

Constructor & Destructor Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>
AbstractCorrectionTermAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::AbstractCorrectionTermAssembler ( AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *  pMesh,
AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM > *  pTissue 
) [inline]

Constructor.

Parameters:
pMesh pointer to the mesh
pTissue pointer to the cardiac tissue

Definition at line 40 of file AbstractCorrectionTermAssembler.cpp.

References AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::GetElementIteratorBegin(), AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::GetElementIteratorEnd(), AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetIndex(), AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetNodeGlobalIndex(), AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::GetNumElements(), AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetNumNodes(), AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetOwnership(), AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetUnsignedAttribute(), HeartRegionCode::IsRegionBath(), AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >::mElementsCanDoSvi, and AbstractCardiacFeVolumeIntegralAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM, true, false, CARDIAC >::mpCardiacTissue.

Member Function Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>
bool AbstractCorrectionTermAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::ElementAssemblyCriterion ( Element< ELEMENT_DIM, SPACE_DIM > &  rElement  )  [inline, protected, virtual]
Returns:
true if we should assemble the correction term for this element. Checks if there is a sufficiently steep ionic current gradient to make the expense worthwhile, by checking if the maximum difference between nodal ionic currents is greater than 1 uA/cm^2^.
Parameters:
rElement the element to test

Reimplemented from AbstractFeVolumeIntegralAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >.

Definition at line 112 of file AbstractCorrectionTermAssembler.cpp.

References AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetIndex(), AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetNodeGlobalIndex(), AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >::mElementsCanDoSvi, AbstractCardiacFeVolumeIntegralAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM, true, false, CARDIAC >::mpCardiacTissue, and AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >::mStateVariablesAtQuadPoint.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>
void AbstractCorrectionTermAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::IncrementInterpolatedQuantities ( double  phiI,
const Node< SPACE_DIM > *  pNode 
) [inline, protected, virtual]

Interpolates state variables and ionic current.

Parameters:
phiI 
pNode 

Reimplemented from AbstractFeAssemblerCommon< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >.

Definition at line 95 of file AbstractCorrectionTermAssembler.cpp.

References Node< SPACE_DIM >::GetIndex(), AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >::mIionicInterp, AbstractCardiacFeVolumeIntegralAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM, true, false, CARDIAC >::mpCardiacTissue, and AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >::mStateVariablesAtQuadPoint.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>
void AbstractCorrectionTermAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::ResetInterpolatedQuantities ( void   )  [inline, protected, virtual]

Resets interpolated state variables and ionic current.

Reimplemented from AbstractFeAssemblerCommon< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >.

Definition at line 84 of file AbstractCorrectionTermAssembler.cpp.

References AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >::mIionicInterp, and AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >::mStateVariablesAtQuadPoint.

Member Data Documentation

template<unsigned ELEM_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>
std::vector<bool> AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >::mElementsCanDoSvi [protected]

Vector of bools, one bool per element, representing whether each element can do SVI. If the element has different cell models at each node, or has been designated a bath element, then it cannot do SVI.

Definition at line 70 of file AbstractCorrectionTermAssembler.hpp.

Referenced by AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >::AbstractCorrectionTermAssembler(), and AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >::ElementAssemblyCriterion().

template<unsigned ELEM_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>
double AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >::mIionicInterp [protected]

Ionic current to be interpolated from cache

Definition at line 54 of file AbstractCorrectionTermAssembler.hpp.

Referenced by AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >::IncrementInterpolatedQuantities(), and AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >::ResetInterpolatedQuantities().

template<unsigned ELEM_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>
std::vector<double> AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >::mStateVariablesAtQuadPoint [protected]

State variables interpolated onto quadrature point

Definition at line 57 of file AbstractCorrectionTermAssembler.hpp.

Referenced by AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >::ElementAssemblyCriterion(), AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >::IncrementInterpolatedQuantities(), and AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >::ResetInterpolatedQuantities().

The documentation for this class was generated from the following files:
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