CellProliferativeTypesCountWriter< ELEMENT_DIM, SPACE_DIM > Class Template Reference
#include <CellProliferativeTypesCountWriter.hpp>
Inherits AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM >.
Public Member Functions | |
| CellProliferativeTypesCountWriter () | |
| void | VisitAnyPopulation (AbstractCellPopulation< SPACE_DIM, SPACE_DIM > *pCellPopulation) |
| virtual void | Visit (MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation) |
| virtual void | Visit (CaBasedCellPopulation< SPACE_DIM > *pCellPopulation) |
| virtual void | Visit (NodeBasedCellPopulation< SPACE_DIM > *pCellPopulation) |
| virtual void | Visit (PottsBasedCellPopulation< SPACE_DIM > *pCellPopulation) |
| virtual void | Visit (VertexBasedCellPopulation< SPACE_DIM > *pCellPopulation) |
Private Member Functions | |
| template<class Archive > | |
| void | serialize (Archive &archive, const unsigned int version) |
Friends | |
| class | boost::serialization::access |
Detailed Description
template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
class CellProliferativeTypesCountWriter< ELEMENT_DIM, SPACE_DIM >
A class written using the visitor pattern for writing the number of cells of each proliferative type to file.
Definition at line 45 of file CellProliferativeTypesCountWriter.hpp.
Constructor & Destructor Documentation
| CellProliferativeTypesCountWriter< ELEMENT_DIM, SPACE_DIM >::CellProliferativeTypesCountWriter | ( | ) | [inline] |
Default constructor.
Definition at line 45 of file CellProliferativeTypesCountWriter.cpp.
Member Function Documentation
| void CellProliferativeTypesCountWriter< ELEMENT_DIM, SPACE_DIM >::serialize | ( | Archive & | archive, | |
| const unsigned int | version | |||
| ) | [inline, private] |
Serialize the object and its member variables.
- Parameters:
-
archive the archive version the current version of this class
Reimplemented from AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 57 of file CellProliferativeTypesCountWriter.hpp.
| void CellProliferativeTypesCountWriter< ELEMENT_DIM, SPACE_DIM >::Visit | ( | VertexBasedCellPopulation< SPACE_DIM > * | pCellPopulation | ) | [inline, virtual] |
Visit the population and write the number of cells in the population that have each proliferative type.
Outputs a line of tab-separated values of the form: [num stem] [num transit] [num differentiated] [num default]
where [num stem] denotes the number of cells in the population that have a StemCellProliferativeType, and so on. These counts are computed through the cell population method GetCellProliferativeTypeCount().
This line is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.
- Parameters:
-
pCellPopulation a pointer to the VertexBasedCellPopulation to visit.
Implements AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 96 of file CellProliferativeTypesCountWriter.cpp.
References CellProliferativeTypesCountWriter< ELEMENT_DIM, SPACE_DIM >::VisitAnyPopulation().
| void CellProliferativeTypesCountWriter< ELEMENT_DIM, SPACE_DIM >::Visit | ( | PottsBasedCellPopulation< SPACE_DIM > * | pCellPopulation | ) | [inline, virtual] |
Visit the population and write the number of cells in the population that have each proliferative type.
Outputs a line of tab-separated values of the form: [num stem] [num transit] [num differentiated] [num default]
where [num stem] denotes the number of cells in the population that have a StemCellProliferativeType, and so on. These counts are computed through the cell population method GetCellProliferativeTypeCount().
This line is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.
- Parameters:
-
pCellPopulation a pointer to the PottsBasedCellPopulation to visit.
Implements AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 90 of file CellProliferativeTypesCountWriter.cpp.
References CellProliferativeTypesCountWriter< ELEMENT_DIM, SPACE_DIM >::VisitAnyPopulation().
| void CellProliferativeTypesCountWriter< ELEMENT_DIM, SPACE_DIM >::Visit | ( | NodeBasedCellPopulation< SPACE_DIM > * | pCellPopulation | ) | [inline, virtual] |
Visit the population and write the number of cells in the population that have each proliferative type.
Outputs a line of tab-separated values of the form: [num stem] [num transit] [num differentiated] [num default]
where [num stem] denotes the number of cells in the population that have a StemCellProliferativeType, and so on. These counts are computed through the cell population method GetCellProliferativeTypeCount().
This line is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.
- Parameters:
-
pCellPopulation a pointer to the NodeBasedCellPopulation to visit.
Implements AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 84 of file CellProliferativeTypesCountWriter.cpp.
References CellProliferativeTypesCountWriter< ELEMENT_DIM, SPACE_DIM >::VisitAnyPopulation().
| void CellProliferativeTypesCountWriter< ELEMENT_DIM, SPACE_DIM >::Visit | ( | CaBasedCellPopulation< SPACE_DIM > * | pCellPopulation | ) | [inline, virtual] |
Visit the population and write the number of cells in the population that have each proliferative type.
Outputs a line of tab-separated values of the form: [num stem] [num transit] [num differentiated] [num default]
where [num stem] denotes the number of cells in the population that have a StemCellProliferativeType, and so on. These counts are computed through the cell population method GetCellProliferativeTypeCount().
This line is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.
- Parameters:
-
pCellPopulation a pointer to the CaBasedCellPopulation to visit.
Implements AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 78 of file CellProliferativeTypesCountWriter.cpp.
References CellProliferativeTypesCountWriter< ELEMENT_DIM, SPACE_DIM >::VisitAnyPopulation().
| void CellProliferativeTypesCountWriter< ELEMENT_DIM, SPACE_DIM >::Visit | ( | MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM > * | pCellPopulation | ) | [inline, virtual] |
Visit the population and write the number of cells in the population that have each proliferative type.
Outputs a line of tab-separated values of the form: [num stem] [num transit] [num differentiated] [num default]
where [num stem] denotes the number of cells in the population that have a StemCellProliferativeType, and so on. These counts are computed through the cell population method GetCellProliferativeTypeCount().
This line is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.
- Parameters:
-
pCellPopulation a pointer to the MeshBasedCellPopulation to visit.
Implements AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 65 of file CellProliferativeTypesCountWriter.cpp.
References PetscTools::AmMaster(), AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::GetCellProliferativeTypeCount(), and AbstractCellBasedWriter< ELEMENT_DIM, SPACE_DIM >::mpOutStream.
| void CellProliferativeTypesCountWriter< ELEMENT_DIM, SPACE_DIM >::VisitAnyPopulation | ( | AbstractCellPopulation< SPACE_DIM, SPACE_DIM > * | pCellPopulation | ) | [inline] |
A general method for writing to any population.
- Parameters:
-
pCellPopulation the population to write.
Definition at line 51 of file CellProliferativeTypesCountWriter.cpp.
References PetscTools::AmMaster(), AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::GetCellProliferativeTypeCount(), and AbstractCellBasedWriter< ELEMENT_DIM, SPACE_DIM >::mpOutStream.
Referenced by CellProliferativeTypesCountWriter< ELEMENT_DIM, SPACE_DIM >::Visit().
Friends And Related Function Documentation
friend class boost::serialization::access [friend] |
Needed for serialization.
Reimplemented from AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 49 of file CellProliferativeTypesCountWriter.hpp.
The documentation for this class was generated from the following files:
- cell_based/src/population/writers/population_count_writers/CellProliferativeTypesCountWriter.hpp
- cell_based/src/population/writers/population_count_writers/CellProliferativeTypesCountWriter.cpp
