CellBetaCateninWriter< ELEMENT_DIM, SPACE_DIM > Class Template Reference

#include <CellBetaCateninWriter.hpp>

Inherits AbstractCellWriter< ELEMENT_DIM, SPACE_DIM >.

Collaboration diagram for CellBetaCateninWriter< ELEMENT_DIM, SPACE_DIM >:

Public Member Functions
	CellBetaCateninWriter ()
double	GetCellDataForVtkOutput (CellPtr pCell, AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation)
virtual void	VisitCell (CellPtr pCell, AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation)
Private Member Functions
template<class Archive >
void	serialize (Archive &archive, const unsigned int version)
Friends
class	boost::serialization::access

Detailed Description

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
class CellBetaCateninWriter< ELEMENT_DIM, SPACE_DIM >

A class written using the visitor pattern for writing cell beta catenin levels to file.

Definition at line 46 of file CellBetaCateninWriter.hpp.

Constructor & Destructor Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

CellBetaCateninWriter< ELEMENT_DIM, SPACE_DIM >::CellBetaCateninWriter ( ) [inline]

Default constructor.

Definition at line 40 of file CellBetaCateninWriter.cpp.

References AbstractCellWriter< ELEMENT_DIM, SPACE_DIM >::mVtkCellDataName.

Member Function Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

double CellBetaCateninWriter< ELEMENT_DIM, SPACE_DIM >::GetCellDataForVtkOutput	(	CellPtr	pCell,
		AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *	pCellPopulation
	)			`[inline, virtual]`

Overridden GetCellDataForVtkOutput() method.

Get a double associated with a cell. This method reduces duplication of code between the methods VisitCell() and AddVtkData().

In this overridden method, since we are only able to output one double for each cell, we choose to output the cytoplasmic beta catenin concentration. Thus, at present, the membrane-bound and nuclear beta catenin concentrations cannot be visualized as VTK output. If this were required, it would be straightforward to implement within the current framework, for example by defined two new writer classes.

Parameters:

	pCell	a cell
	pCellPopulation	a pointer to the cell population owning the cell

Returns:: data associated with the cell

Implements AbstractCellWriter< ELEMENT_DIM, SPACE_DIM >.

Definition at line 47 of file CellBetaCateninWriter.cpp.

References AbstractVanLeeuwen2009WntSwatCellCycleModel::GetCytoplasmicBetaCateninLevel().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

template<class Archive >

void CellBetaCateninWriter< ELEMENT_DIM, SPACE_DIM >::serialize	(	Archive &	archive,
		const unsigned int	version
	)			`[inline, private]`

Serialize the object and its member variables.

Parameters:

	archive	the archive
	version	the current version of this class

Reimplemented from AbstractCellWriter< ELEMENT_DIM, SPACE_DIM >.

Definition at line 58 of file CellBetaCateninWriter.hpp.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

void CellBetaCateninWriter< ELEMENT_DIM, SPACE_DIM >::VisitCell	(	CellPtr	pCell,
		AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *	pCellPopulation
	)			`[inline, virtual]`