AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM > Class Template Reference

#include <AbstractMeshWriter.hpp>

Inherited by AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >, and VertexMeshWriter< ELEMENT_DIM, SPACE_DIM >.

Collaboration diagram for AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >:
Collaboration graph
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List of all members.

Public Member Functions

 AbstractMeshWriter (const std::string &rDirectory, const std::string &rBaseName, const bool clearOutputDir=true)
virtual ~AbstractMeshWriter ()
std::string GetOutputDirectory ()
virtual unsigned GetNumNodes ()
unsigned GetNumElements ()
unsigned GetNumBoundaryFaces ()
unsigned GetNumCableElements ()
virtual std::vector< double > GetNextNode ()
virtual ElementData GetNextElement ()
virtual ElementData GetNextBoundaryElement ()
virtual ElementData GetNextCableElement ()
virtual void WriteFiles ()=0
void WriteFilesUsingMeshReader (AbstractMeshReader< ELEMENT_DIM, SPACE_DIM > &rMeshReader)

Protected Attributes

OutputFileHandler * mpOutputFileHandler
std::string mBaseName
AbstractMeshReader
< ELEMENT_DIM, SPACE_DIM > * 		mpMeshReader
unsigned mNumNodes
unsigned mNumElements
unsigned mNumBoundaryElements
unsigned mNumCableElements

Detailed Description

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
class AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >

An abstract mesh writer class.

Definition at line 50 of file AbstractMeshWriter.hpp.

Constructor & Destructor Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >::AbstractMeshWriter ( const std::string &  rDirectory,
const std::string &  rBaseName,
const bool  clearOutputDir = true 
) [inline]

Constructor.

Parameters:
rDirectory the directory in which to write the mesh to file
rBaseName the base name of the files in which to write the mesh data
clearOutputDir whether to clean the directory (defaults to true)

Definition at line 45 of file AbstractMeshWriter.cpp.

References AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >::mpOutputFileHandler.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >::~AbstractMeshWriter (  )  [inline, virtual]

Destructor.

Definition at line 55 of file AbstractMeshWriter.cpp.

References AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >::mpOutputFileHandler.

Member Function Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
ElementData AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >::GetNextBoundaryElement (  )  [inline, virtual]
Returns:
the data (indices/attributes) of the next face to be written to file

Reimplemented in AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >.

Definition at line 106 of file AbstractMeshWriter.cpp.

References AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >::mpMeshReader.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
ElementData AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >::GetNextCableElement (  )  [inline, virtual]
Returns:
the data (indices/attributes) of the next cable element to be written to file

Reimplemented in AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >.

Definition at line 113 of file AbstractMeshWriter.cpp.

References AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >::mpMeshReader.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
ElementData AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >::GetNextElement (  )  [inline, virtual]
Returns:
the data (indices/attributes) of the next element to be written to file

Reimplemented in VertexMeshWriter< ELEMENT_DIM, SPACE_DIM >, AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >, and PottsMeshWriter< SPACE_DIM >.

Definition at line 99 of file AbstractMeshWriter.cpp.

References AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >::mpMeshReader.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
std::vector< double > AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >::GetNextNode (  )  [inline, virtual]
Returns:
the coordinates of the next node to be written to file

Reimplemented in VertexMeshWriter< ELEMENT_DIM, SPACE_DIM >, AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >, and PottsMeshWriter< SPACE_DIM >.

Definition at line 92 of file AbstractMeshWriter.cpp.

References AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >::mpMeshReader.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
unsigned AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >::GetNumBoundaryFaces (  )  [inline]
Returns:
the number of boundary elements in the mesh.

Definition at line 79 of file AbstractMeshWriter.cpp.

References AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >::mNumBoundaryElements.

Referenced by MeshalyzerMeshWriter< ELEMENT_DIM, SPACE_DIM >::CreateFilesWithHeaders(), VtkMeshWriter< ELEMENT_DIM, SPACE_DIM >::MakeVtkMesh(), TrianglesMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteFacesAsEdges(), TrianglesMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteFiles(), and MeshalyzerMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteFiles().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
unsigned AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >::GetNumCableElements (  )  [inline]
Returns:
the number of cable elements in the mesh.

Definition at line 85 of file AbstractMeshWriter.cpp.

References AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >::mNumCableElements.

Referenced by VtkMeshWriter< ELEMENT_DIM, SPACE_DIM >::AugmentCellData(), VtkMeshWriter< ELEMENT_DIM, SPACE_DIM >::MakeVtkMesh(), and TrianglesMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteFiles().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
unsigned AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >::GetNumElements (  )  [inline]
Returns:
the number of elements in the mesh.

Definition at line 73 of file AbstractMeshWriter.cpp.

References AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >::mNumElements.

Referenced by VtkMeshWriter< ELEMENT_DIM, SPACE_DIM >::AugmentCellData(), MeshalyzerMeshWriter< ELEMENT_DIM, SPACE_DIM >::CreateFilesWithHeaders(), VtkMeshWriter< ELEMENT_DIM, SPACE_DIM >::MakeVtkMesh(), TrianglesMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteElementsAsFaces(), XdmfMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteFiles(), TrianglesMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteFiles(), MeshalyzerMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteFiles(), CmguiMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteFiles(), and VertexMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteFiles().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
unsigned AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >::GetNumNodes (  )  [inline, virtual]
Returns:
the number of nodes in the mesh.

Reimplemented in CmguiDeformedSolutionsWriter< DIM >.

Definition at line 67 of file AbstractMeshWriter.cpp.

References AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >::mNumNodes.

Referenced by MeshalyzerMeshWriter< ELEMENT_DIM, SPACE_DIM >::CreateFilesWithHeaders(), VtkMeshWriter< ELEMENT_DIM, SPACE_DIM >::MakeVtkMesh(), XdmfMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteFiles(), TrianglesMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteFiles(), MeshalyzerMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteFiles(), CmguiMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteFiles(), VertexMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteFiles(), and AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteFilesUsingMesh().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
std::string AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >::GetOutputDirectory (  )  [inline]
Returns:
the full path to the directory where meshes will be written.

Definition at line 61 of file AbstractMeshWriter.cpp.

References OutputFileHandler::GetOutputDirectoryFullPath(), and AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >::mpOutputFileHandler.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
virtual void AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteFiles (  )  [pure virtual]

Write mesh data to files. This method must be overridden in concrete classes.

Implemented in VertexMeshWriter< ELEMENT_DIM, SPACE_DIM >, CmguiMeshWriter< ELEMENT_DIM, SPACE_DIM >, MeshalyzerMeshWriter< ELEMENT_DIM, SPACE_DIM >, TrianglesMeshWriter< ELEMENT_DIM, SPACE_DIM >, VtkMeshWriter< ELEMENT_DIM, SPACE_DIM >, XdmfMeshWriter< ELEMENT_DIM, SPACE_DIM >, PottsMeshWriter< SPACE_DIM >, and CmguiMeshWriter< DIM, DIM >.

Referenced by AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteFilesUsingMesh(), AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteFilesUsingMeshReader(), and AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteFilesUsingParallelMesh().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
void AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteFilesUsingMeshReader ( AbstractMeshReader< ELEMENT_DIM, SPACE_DIM > &  rMeshReader  )  [inline]

Read in a mesh and write it to file.

Parameters:
rMeshReader the mesh reader

Only triangles mesh readers know about cable elements

Definition at line 121 of file AbstractMeshWriter.cpp.

References PetscTools::AmMaster(), AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >::mNumBoundaryElements, AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >::mNumCableElements, AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >::mNumElements, AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >::mNumNodes, AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >::mpMeshReader, and AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteFiles().

Referenced by Hdf5ToCmguiConverter< ELEMENT_DIM, SPACE_DIM >::Hdf5ToCmguiConverter(), Hdf5ToMeshalyzerConverter< ELEMENT_DIM, SPACE_DIM >::Hdf5ToMeshalyzerConverter(), Hdf5ToVtkConverter< ELEMENT_DIM, SPACE_DIM >::Hdf5ToVtkConverter(), and AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteFilesUsingMeshReaderAndMesh().

Member Data Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
std::string AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >::mBaseName [protected]

Base name for the input files

Definition at line 55 of file AbstractMeshWriter.hpp.

Referenced by CmguiMeshWriter< ELEMENT_DIM, SPACE_DIM >::CmguiMeshWriter(), MeshalyzerMeshWriter< ELEMENT_DIM, SPACE_DIM >::OpenElementFile(), CmguiMeshWriter< ELEMENT_DIM, SPACE_DIM >::OpenElementFiles(), MeshalyzerMeshWriter< ELEMENT_DIM, SPACE_DIM >::OpenFaceFile(), MeshalyzerMeshWriter< ELEMENT_DIM, SPACE_DIM >::OpenNodeFile(), CmguiMeshWriter< ELEMENT_DIM, SPACE_DIM >::OpenNodeFile(), CmguiDeformedSolutionsWriter< DIM >::WriteCmguiScript(), CmguiDeformedSolutionsWriter< DIM >::WriteDeformationPositions(), TrianglesMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteElementsAsFaces(), TrianglesMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteFacesAsEdges(), XdmfMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteFiles(), VtkMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteFiles(), TrianglesMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteFiles(), MeshalyzerMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteFiles(), VertexMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteFiles(), XdmfMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteFilesUsingMesh(), VtkMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteFilesUsingMesh(), CmguiDeformedSolutionsWriter< DIM >::WriteInitialMesh(), MeshalyzerMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteMetaFile(), AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteNclFile(), VertexMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteVtkUsingMesh(), and XdmfMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteXdmfMasterFile().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
unsigned AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >::mNumBoundaryElements [protected]

Total number of boundary elements in mesh/mesh-reader

Definition at line 61 of file AbstractMeshWriter.hpp.

Referenced by AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >::GetNextBoundaryElement(), AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >::GetNextCableElement(), AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >::GetNumBoundaryFaces(), AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteFilesUsingMesh(), AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteFilesUsingMeshReader(), and AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteFilesUsingParallelMesh().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
unsigned AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >::mNumCableElements [protected]

Total number of cable elements in mesh/mesh-reader

Definition at line 62 of file AbstractMeshWriter.hpp.

Referenced by AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >::GetNumCableElements(), AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteFilesUsingMesh(), and AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteFilesUsingMeshReader().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
unsigned AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >::mNumElements [protected]

Total number of elements in mesh/mesh-reader

Definition at line 60 of file AbstractMeshWriter.hpp.

Referenced by AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >::GetNextBoundaryElement(), AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >::GetNextCableElement(), AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >::GetNextElement(), VertexMeshWriter< ELEMENT_DIM, SPACE_DIM >::GetNextElement(), VertexMeshWriter< ELEMENT_DIM, SPACE_DIM >::GetNextElementWithFaces(), AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >::GetNumElements(), AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteFilesUsingMesh(), VertexMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteFilesUsingMesh(), AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteFilesUsingMeshReader(), and AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteFilesUsingParallelMesh().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
unsigned AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >::mNumNodes [protected]

Total number of nodes in mesh/mesh-reader

Definition at line 59 of file AbstractMeshWriter.hpp.

Referenced by AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >::GetNextBoundaryElement(), AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >::GetNextCableElement(), AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >::GetNextElement(), VertexMeshWriter< ELEMENT_DIM, SPACE_DIM >::GetNextNode(), AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >::GetNumNodes(), AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteFilesUsingMesh(), VertexMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteFilesUsingMesh(), AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteFilesUsingMeshReader(), and AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteFilesUsingParallelMesh().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
AbstractMeshReader<ELEMENT_DIM,SPACE_DIM>* AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >::mpMeshReader [protected]

Writer by default writes from a reader (for conversion). If this pointer is non-null, data can be copied straight across

Definition at line 57 of file AbstractMeshWriter.hpp.

Referenced by AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >::GetNextBoundaryElement(), AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >::GetNextCableElement(), AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >::GetNextElement(), AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >::GetNextNode(), AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteFilesUsingMesh(), VertexMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteFilesUsingMesh(), and AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteFilesUsingMeshReader().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
OutputFileHandler* AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >::mpOutputFileHandler [protected]

Output file handler

Definition at line 54 of file AbstractMeshWriter.hpp.

Referenced by AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >::AbstractMeshWriter(), VtkMeshWriter< ELEMENT_DIM, SPACE_DIM >::AddProvenance(), AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >::GetOutputDirectory(), MeshalyzerMeshWriter< ELEMENT_DIM, SPACE_DIM >::OpenElementFile(), CmguiMeshWriter< ELEMENT_DIM, SPACE_DIM >::OpenElementFiles(), MeshalyzerMeshWriter< ELEMENT_DIM, SPACE_DIM >::OpenFaceFile(), MeshalyzerMeshWriter< ELEMENT_DIM, SPACE_DIM >::OpenNodeFile(), CmguiMeshWriter< ELEMENT_DIM, SPACE_DIM >::OpenNodeFile(), CmguiDeformedSolutionsWriter< DIM >::WriteCmguiScript(), CmguiDeformedSolutionsWriter< DIM >::WriteDeformationPositions(), TrianglesMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteElementsAsFaces(), TrianglesMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteFacesAsEdges(), XdmfMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteFiles(), VtkMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteFiles(), TrianglesMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteFiles(), VertexMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteFiles(), XdmfMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteFilesUsingMesh(), VtkMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteFilesUsingMesh(), MeshalyzerMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteMetaFile(), AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteNclFile(), VertexMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteVtkUsingMesh(), XdmfMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteXdmfMasterFile(), and AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >::~AbstractMeshWriter().

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