CellProliferativePhasesCountWriter< ELEMENT_DIM, SPACE_DIM > Class Template Reference
#include <CellProliferativePhasesCountWriter.hpp>
Inherits AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM >.
Public Member Functions | |
| CellProliferativePhasesCountWriter () | |
| void | VisitAnyPopulation (AbstractCellPopulation< SPACE_DIM, SPACE_DIM > *pCellPopulation) |
| virtual void | Visit (MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation) |
| virtual void | Visit (CaBasedCellPopulation< SPACE_DIM > *pCellPopulation) |
| virtual void | Visit (NodeBasedCellPopulation< SPACE_DIM > *pCellPopulation) |
| virtual void | Visit (PottsBasedCellPopulation< SPACE_DIM > *pCellPopulation) |
| virtual void | Visit (VertexBasedCellPopulation< SPACE_DIM > *pCellPopulation) |
Private Member Functions | |
| template<class Archive > | |
| void | serialize (Archive &archive, const unsigned int version) |
Friends | |
| class | boost::serialization::access |
Detailed Description
template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
class CellProliferativePhasesCountWriter< ELEMENT_DIM, SPACE_DIM >
A class written using the visitor pattern for writing the number of cells in each proliferative phase to file.
Definition at line 45 of file CellProliferativePhasesCountWriter.hpp.
Constructor & Destructor Documentation
| CellProliferativePhasesCountWriter< ELEMENT_DIM, SPACE_DIM >::CellProliferativePhasesCountWriter | ( | ) | [inline] |
Default constructor.
Definition at line 45 of file CellProliferativePhasesCountWriter.cpp.
Member Function Documentation
| void CellProliferativePhasesCountWriter< ELEMENT_DIM, SPACE_DIM >::serialize | ( | Archive & | archive, | |
| const unsigned int | version | |||
| ) | [inline, private] |
Serialize the object and its member variables.
- Parameters:
-
archive the archive version the current version of this class
Reimplemented from AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 57 of file CellProliferativePhasesCountWriter.hpp.
| void CellProliferativePhasesCountWriter< ELEMENT_DIM, SPACE_DIM >::Visit | ( | VertexBasedCellPopulation< SPACE_DIM > * | pCellPopulation | ) | [inline, virtual] |
Visit the population and write the number of cells in the population that have each proliferative phase.
Outputs a line of tab-separated values of the form: [num G0 phase] [num G1 phase] [num S phase] [num G2 phase] [num M phase]
where [num G0 phase] denotes the number of cells in the population that are in G0 phase, and so on. These counts are computed through the cell population method GetCellCyclePhaseCount().
This line is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.
- Parameters:
-
pCellPopulation a pointer to the VertexBasedCellPopulation to visit.
Implements AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 97 of file CellProliferativePhasesCountWriter.cpp.
References CellProliferativePhasesCountWriter< ELEMENT_DIM, SPACE_DIM >::VisitAnyPopulation().
| void CellProliferativePhasesCountWriter< ELEMENT_DIM, SPACE_DIM >::Visit | ( | PottsBasedCellPopulation< SPACE_DIM > * | pCellPopulation | ) | [inline, virtual] |
Visit the population and write the number of cells in the population that have each proliferative phase.
Outputs a line of tab-separated values of the form: [num G0 phase] [num G1 phase] [num S phase] [num G2 phase] [num M phase]
where [num G0 phase] denotes the number of cells in the population that are in G0 phase, and so on. These counts are computed through the cell population method GetCellCyclePhaseCount().
This line is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.
- Parameters:
-
pCellPopulation a pointer to the PottsBasedCellPopulation to visit.
Implements AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 91 of file CellProliferativePhasesCountWriter.cpp.
References CellProliferativePhasesCountWriter< ELEMENT_DIM, SPACE_DIM >::VisitAnyPopulation().
| void CellProliferativePhasesCountWriter< ELEMENT_DIM, SPACE_DIM >::Visit | ( | NodeBasedCellPopulation< SPACE_DIM > * | pCellPopulation | ) | [inline, virtual] |
Visit the population and write the number of cells in the population that have each proliferative phase.
Outputs a line of tab-separated values of the form: [num G0 phase] [num G1 phase] [num S phase] [num G2 phase] [num M phase]
where [num G0 phase] denotes the number of cells in the population that are in G0 phase, and so on. These counts are computed through the cell population method GetCellCyclePhaseCount().
This line is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.
- Parameters:
-
pCellPopulation a pointer to the NodeBasedCellPopulation to visit.
Implements AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 85 of file CellProliferativePhasesCountWriter.cpp.
References CellProliferativePhasesCountWriter< ELEMENT_DIM, SPACE_DIM >::VisitAnyPopulation().
| void CellProliferativePhasesCountWriter< ELEMENT_DIM, SPACE_DIM >::Visit | ( | CaBasedCellPopulation< SPACE_DIM > * | pCellPopulation | ) | [inline, virtual] |
Visit the population and write the number of cells in the population that have each proliferative phase.
Outputs a line of tab-separated values of the form: [num G0 phase] [num G1 phase] [num S phase] [num G2 phase] [num M phase]
where [num G0 phase] denotes the number of cells in the population that are in G0 phase, and so on. These counts are computed through the cell population method GetCellCyclePhaseCount().
This line is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.
- Parameters:
-
pCellPopulation a pointer to the CaBasedCellPopulation to visit.
Implements AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 79 of file CellProliferativePhasesCountWriter.cpp.
References CellProliferativePhasesCountWriter< ELEMENT_DIM, SPACE_DIM >::VisitAnyPopulation().
| void CellProliferativePhasesCountWriter< ELEMENT_DIM, SPACE_DIM >::Visit | ( | MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM > * | pCellPopulation | ) | [inline, virtual] |
Visit the population and write the number of cells in the population that have each proliferative phase.
Outputs a line of tab-separated values of the form: [num G0 phase] [num G1 phase] [num S phase] [num G2 phase] [num M phase]
where [num G0 phase] denotes the number of cells in the population that are in G0 phase, and so on. These counts are computed through the cell population method GetCellCyclePhaseCount().
This line is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.
- Parameters:
-
pCellPopulation a pointer to the MeshBasedCellPopulation to visit.
Implements AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 65 of file CellProliferativePhasesCountWriter.cpp.
References PetscTools::AmMaster(), AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::GetCellCyclePhaseCount(), and AbstractCellBasedWriter< ELEMENT_DIM, SPACE_DIM >::mpOutStream.
| void CellProliferativePhasesCountWriter< ELEMENT_DIM, SPACE_DIM >::VisitAnyPopulation | ( | AbstractCellPopulation< SPACE_DIM, SPACE_DIM > * | pCellPopulation | ) | [inline] |
Visit the population and write the number of cells in the population that have each proliferative phase.
Outputs a line of tab-separated values of the form: [num G0 phase] [num G1 phase] [num S phase] [num G2 phase] [num M phase]
where [num G0 phase] denotes the number of cells in the population that are in G0 phase, and so on. These counts are computed through the cell population method GetCellCyclePhaseCount().
This line is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.
- Parameters:
-
pCellPopulation the population to write.
Definition at line 51 of file CellProliferativePhasesCountWriter.cpp.
References PetscTools::AmMaster(), AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::GetCellCyclePhaseCount(), and AbstractCellBasedWriter< ELEMENT_DIM, SPACE_DIM >::mpOutStream.
Referenced by CellProliferativePhasesCountWriter< ELEMENT_DIM, SPACE_DIM >::Visit().
Friends And Related Function Documentation
friend class boost::serialization::access [friend] |
Needed for serialization.
Reimplemented from AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 49 of file CellProliferativePhasesCountWriter.hpp.
The documentation for this class was generated from the following files:
- cell_based/src/population/writers/population_count_writers/CellProliferativePhasesCountWriter.hpp
- cell_based/src/population/writers/population_count_writers/CellProliferativePhasesCountWriter.cpp
