CellProliferativePhasesCountWriter.cpp

00001 /*
00002 
00003 Copyright (c) 2005-2015, University of Oxford.
00004 All rights reserved.
00005 
00006 University of Oxford means the Chancellor, Masters and Scholars of the
00007 University of Oxford, having an administrative office at Wellington
00008 Square, Oxford OX1 2JD, UK.
00009 
00010 This file is part of Chaste.
00011 
00012 Redistribution and use in source and binary forms, with or without
00013 modification, are permitted provided that the following conditions are met:
00014  * Redistributions of source code must retain the above copyright notice,
00015    this list of conditions and the following disclaimer.
00016  * Redistributions in binary form must reproduce the above copyright notice,
00017    this list of conditions and the following disclaimer in the documentation
00018    and/or other materials provided with the distribution.
00019  * Neither the name of the University of Oxford nor the names of its
00020    contributors may be used to endorse or promote products derived from this
00021    software without specific prior written permission.
00022 
00023 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
00024 AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
00025 IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
00026 ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
00027 LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
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00029 GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
00030 HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
00031 LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT
00032 OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
00033 
00034 */
00035 
00036 #include "CellProliferativePhasesCountWriter.hpp"
00037 #include "AbstractCellPopulation.hpp"
00038 #include "MeshBasedCellPopulation.hpp"
00039 #include "CaBasedCellPopulation.hpp"
00040 #include "NodeBasedCellPopulation.hpp"
00041 #include "PottsBasedCellPopulation.hpp"
00042 #include "VertexBasedCellPopulation.hpp"
00043 
00044 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
00045 CellProliferativePhasesCountWriter<ELEMENT_DIM, SPACE_DIM>::CellProliferativePhasesCountWriter()
00046     : AbstractCellPopulationCountWriter<ELEMENT_DIM, SPACE_DIM>("cellcyclephases.dat")
00047 {
00048 }
00049 
00050 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
00051 void CellProliferativePhasesCountWriter<ELEMENT_DIM, SPACE_DIM>::VisitAnyPopulation(AbstractCellPopulation<SPACE_DIM, SPACE_DIM>* pCellPopulation)
00052 {
00053 
00054     std::vector<unsigned> cell_cycle_phase_count = pCellPopulation->GetCellCyclePhaseCount();
00055     if (PetscTools::AmMaster())
00056     {
00057         for (unsigned i=0; i < cell_cycle_phase_count.size(); i++)
00058         {
00059             *this->mpOutStream << cell_cycle_phase_count[i] << "\t";
00060         }
00061     }
00062 }
00063 
00064 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
00065 void CellProliferativePhasesCountWriter<ELEMENT_DIM, SPACE_DIM>::Visit(MeshBasedCellPopulation<ELEMENT_DIM, SPACE_DIM>* pCellPopulation)
00066 {
00067     std::vector<unsigned> cell_cycle_phase_count = pCellPopulation->GetCellCyclePhaseCount();
00068 
00069     if (PetscTools::AmMaster())
00070     {
00071         for (unsigned i=0; i < cell_cycle_phase_count.size(); i++)
00072         {
00073             *this->mpOutStream << cell_cycle_phase_count[i] << "\t";
00074         }
00075     }
00076 }
00077 
00078 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
00079 void CellProliferativePhasesCountWriter<ELEMENT_DIM, SPACE_DIM>::Visit(CaBasedCellPopulation<SPACE_DIM>* pCellPopulation)
00080 {
00081     VisitAnyPopulation(pCellPopulation);
00082 }
00083 
00084 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
00085 void CellProliferativePhasesCountWriter<ELEMENT_DIM, SPACE_DIM>::Visit(NodeBasedCellPopulation<SPACE_DIM>* pCellPopulation)
00086 {
00087     VisitAnyPopulation(pCellPopulation);
00088 }
00089 
00090 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
00091 void CellProliferativePhasesCountWriter<ELEMENT_DIM, SPACE_DIM>::Visit(PottsBasedCellPopulation<SPACE_DIM>* pCellPopulation)
00092 {
00093     VisitAnyPopulation(pCellPopulation);
00094 }
00095 
00096 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
00097 void CellProliferativePhasesCountWriter<ELEMENT_DIM, SPACE_DIM>::Visit(VertexBasedCellPopulation<SPACE_DIM>* pCellPopulation)
00098 {
00099     VisitAnyPopulation(pCellPopulation);
00100 }
00101 
00102 // Explicit instantiation
00103 template class CellProliferativePhasesCountWriter<1,1>;
00104 template class CellProliferativePhasesCountWriter<1,2>;
00105 template class CellProliferativePhasesCountWriter<2,2>;
00106 template class CellProliferativePhasesCountWriter<1,3>;
00107 template class CellProliferativePhasesCountWriter<2,3>;
00108 template class CellProliferativePhasesCountWriter<3,3>;
00109 
00110 #include "SerializationExportWrapperForCpp.hpp"
00111 // Declare identifier for the serializer
00112 EXPORT_TEMPLATE_CLASS_ALL_DIMS(CellProliferativePhasesCountWriter)