AbstractCellCycleModel() | AbstractCellCycleModel | |
AbstractSimpleCellCycleModel() | AbstractSimpleCellCycleModel | |
AbstractSimpleGenerationBasedCellCycleModel() | AbstractSimpleGenerationBasedCellCycleModel | |
AdjustOdeParameters(double currentTime) | CellCycleModelOdeHandler | [protected, virtual] |
boost::serialization::access class | DeltaNotchCellCycleModel | [friend] |
CanCellTerminallyDifferentiate() | AbstractCellCycleModel | [virtual] |
CellCycleModelOdeHandler(double lastTime=SimulationTime::Instance()->GetTime(), boost::shared_ptr< AbstractCellCycleModelOdeSolver > pOdeSolver=boost::shared_ptr< AbstractCellCycleModelOdeSolver >()) | CellCycleModelOdeHandler | |
CreateCellCycleModel() | DeltaNotchCellCycleModel | [virtual] |
DeltaNotchCellCycleModel(boost::shared_ptr< AbstractCellCycleModelOdeSolver > pOdeSolver=boost::shared_ptr< AbstractCellCycleModelOdeSolver >()) | DeltaNotchCellCycleModel | |
GetAge() | AbstractCellCycleModel | |
GetAverageStemCellCycleTime() | AbstractCellCycleModel | [virtual] |
GetAverageTransitCellCycleTime() | AbstractCellCycleModel | [virtual] |
GetBirthTime() const | AbstractCellCycleModel | |
GetCell() | AbstractCellCycleModel | |
GetCurrentCellCyclePhase() | AbstractCellCycleModel | |
GetDelta() | DeltaNotchCellCycleModel | |
GetDimension() | AbstractCellCycleModel | |
GetDt() | CellCycleModelOdeHandler | |
GetG1Duration() | AbstractCellCycleModel | [virtual] |
GetG2Duration() | AbstractCellCycleModel | [virtual] |
GetGeneration() const | AbstractSimpleGenerationBasedCellCycleModel | |
GetIdentifier() const | Identifiable | |
GetMaxTransitGenerations() const | AbstractSimpleGenerationBasedCellCycleModel | |
GetMDuration() | AbstractCellCycleModel | [virtual] |
GetMeanNeighbouringDelta() | DeltaNotchCellCycleModel | |
GetMinimumGapDuration() | AbstractCellCycleModel | |
GetNotch() | DeltaNotchCellCycleModel | |
GetOdeSolver() const | CellCycleModelOdeHandler | |
GetOdeSystem() const | CellCycleModelOdeHandler | |
GetSDuration() | AbstractCellCycleModel | [virtual] |
GetSG2MDuration() | AbstractCellCycleModel | |
GetStemCellG1Duration() | AbstractCellCycleModel | |
GetTransitCellG1Duration() | AbstractCellCycleModel | |
Initialise() | DeltaNotchCellCycleModel | [virtual] |
InitialiseDaughterCell() | AbstractSimpleGenerationBasedCellCycleModel | [virtual] |
mBirthTime | AbstractCellCycleModel | [protected] |
mCurrentCellCyclePhase | AbstractCellCycleModel | [protected] |
mDimension | AbstractCellCycleModel | [protected] |
mDt | CellCycleModelOdeHandler | [protected] |
mG1Duration | AbstractCellCycleModel | [protected] |
mG2Duration | AbstractCellCycleModel | [protected] |
mGeneration | AbstractSimpleGenerationBasedCellCycleModel | [protected] |
mInitialConditions | DeltaNotchCellCycleModel | [private] |
mLastTime | CellCycleModelOdeHandler | [protected] |
mMaxTransitGenerations | AbstractSimpleGenerationBasedCellCycleModel | [protected] |
mMDuration | AbstractCellCycleModel | [protected] |
mMinimumGapDuration | AbstractCellCycleModel | [protected] |
mpCell | AbstractCellCycleModel | [protected] |
mpOdeSolver | CellCycleModelOdeHandler | [protected] |
mpOdeSystem | CellCycleModelOdeHandler | [protected] |
mReadyToDivide | AbstractCellCycleModel | [protected] |
mSDuration | AbstractCellCycleModel | [protected] |
mStemCellG1Duration | AbstractCellCycleModel | [protected] |
mTransitCellG1Duration | AbstractCellCycleModel | [protected] |
OutputCellCycleModelInfo(out_stream &rParamsFile) | AbstractCellCycleModel | |
OutputCellCycleModelParameters(out_stream &rParamsFile) | DeltaNotchCellCycleModel | [virtual] |
ReadyToDivide() | AbstractCellCycleModel | [virtual] |
ResetForDivision() | AbstractSimpleGenerationBasedCellCycleModel | [virtual] |
serialize(Archive &archive, const unsigned int version) | DeltaNotchCellCycleModel | [inline, private] |
SetBirthTime(double birthTime) | AbstractCellCycleModel | [virtual] |
SetCell(CellPtr pCell) | AbstractCellCycleModel | |
SetDimension(unsigned dimension) | AbstractCellCycleModel | |
SetDt(double timeStep) | CellCycleModelOdeHandler | |
SetG1Duration() | StochasticDurationGenerationBasedCellCycleModel | [protected, virtual] |
SetG2Duration(double g2Duration) | AbstractCellCycleModel | |
SetGeneration(unsigned generation) | AbstractSimpleGenerationBasedCellCycleModel | |
SetInitialConditions(std::vector< double > initialConditions) | DeltaNotchCellCycleModel | |
SetLastTime(double lastTime) | CellCycleModelOdeHandler | |
SetMaxTransitGenerations(unsigned maxTransitGenerations) | AbstractSimpleGenerationBasedCellCycleModel | |
SetMDuration(double mDuration) | AbstractCellCycleModel | |
SetMinimumGapDuration(double minimumGapDuration) | AbstractCellCycleModel | |
SetOdeSystem(AbstractOdeSystem *pOdeSystem) | CellCycleModelOdeHandler | |
SetSDuration(double sDuration) | AbstractCellCycleModel | |
SetStateVariables(const std::vector< double > &rStateVariables) | CellCycleModelOdeHandler | |
SetStemCellG1Duration(double stemCellG1Duration) | AbstractCellCycleModel | [virtual] |
SetTransitCellG1Duration(double transitCellG1Duration) | AbstractCellCycleModel | [virtual] |
SolveOdeToTime(double currentTime) | CellCycleModelOdeHandler | [protected] |
StochasticDurationGenerationBasedCellCycleModel() | StochasticDurationGenerationBasedCellCycleModel | |
UpdateCellCyclePhase() | DeltaNotchCellCycleModel | [virtual] |
UpdateDeltaNotch() | DeltaNotchCellCycleModel | |
~AbstractCellCycleModel() | AbstractCellCycleModel | [virtual] |
~AbstractSimpleCellCycleModel() | AbstractSimpleCellCycleModel | [virtual] |
~AbstractSimpleGenerationBasedCellCycleModel() | AbstractSimpleGenerationBasedCellCycleModel | [virtual] |
~CellCycleModelOdeHandler() | CellCycleModelOdeHandler | [virtual] |
~Identifiable() | Identifiable | [virtual] |