, including all inherited members.
| AbstractCellPopulation(AbstractMesh< ELEMENT_DIM, SPACE_DIM > &rMesh) | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | [inline, protected] |
| AbstractCellPopulation(AbstractMesh< ELEMENT_DIM, SPACE_DIM > &rMesh, std::vector< CellPtr > &rCells, const std::vector< unsigned > locationIndices=std::vector< unsigned >()) | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | [inline] |
| AbstractCentreBasedCellPopulation(AbstractMesh< ELEMENT_DIM, ELEMENT_DIM > &rMesh) | AbstractCentreBasedCellPopulation< DIM > | [protected] |
| AbstractCentreBasedCellPopulation(AbstractMesh< ELEMENT_DIM, ELEMENT_DIM > &rMesh, std::vector< CellPtr > &rCells, const std::vector< unsigned > locationIndices=std::vector< unsigned >()) | AbstractCentreBasedCellPopulation< DIM > | |
| AbstractOffLatticeCellPopulation(AbstractMesh< ELEMENT_DIM, SPACE_DIM > &rMesh) | AbstractOffLatticeCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | [protected] |
| AbstractOffLatticeCellPopulation(AbstractMesh< ELEMENT_DIM, SPACE_DIM > &rMesh, std::vector< CellPtr > &rCells, const std::vector< unsigned > locationIndices=std::vector< unsigned >()) | AbstractOffLatticeCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | |
| AcceptCellWriter(boost::shared_ptr< AbstractCellWriter< DIM, DIM > > pCellWriter, CellPtr pCell) | NodeBasedCellPopulation< DIM > | [inline, virtual] |
| AbstractCentreBasedCellPopulation< DIM >::AcceptCellWriter(boost::shared_ptr< AbstractCellWriter< ELEMENT_DIM, SPACE_DIM > > pCellWriter, CellPtr pCell)=0 | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | [pure virtual] |
| AcceptPopulationCountWriter(boost::shared_ptr< AbstractCellPopulationCountWriter< DIM, DIM > > pPopulationCountWriter) | NodeBasedCellPopulation< DIM > | [inline, virtual] |
| AbstractCentreBasedCellPopulation< DIM >::AcceptPopulationCountWriter(boost::shared_ptr< AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM > > pPopulationCountWriter)=0 | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | [pure virtual] |
| AcceptPopulationWriter(boost::shared_ptr< AbstractCellPopulationWriter< DIM, DIM > > pPopulationWriter) | NodeBasedCellPopulation< DIM > | [inline, virtual] |
| AbstractCentreBasedCellPopulation< DIM >::AcceptPopulationWriter(boost::shared_ptr< AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM > > pPopulationWriter)=0 | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | [pure virtual] |
| AddCell(CellPtr pNewCell, const c_vector< double, DIM > &rCellDivisionVector, CellPtr pParentCell) | NodeBasedCellPopulationWithParticles< DIM > | [inline, virtual] |
| AbstractCentreBasedCellPopulation< DIM >::AddCell(CellPtr pNewCell, const c_vector< double, ELEMENT_DIM > &rCellDivisionVector, CellPtr pParentCell=CellPtr()) | AbstractCentreBasedCellPopulation< DIM > | |
| AbstractOffLatticeCellPopulation< ELEMENT_DIM, ELEMENT_DIM >::AddCell(CellPtr pNewCell, const c_vector< double, SPACE_DIM > &rCellDivisionVector, CellPtr pParentCell=CellPtr())=0 | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | [pure virtual] |
| AddCellPopulationCountWriter() | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | [inline] |
| AddCellPopulationCountWriter(boost::shared_ptr< AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM > > pCellPopulationCountWriter) | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | [inline] |
| AddCellUsingLocationIndex(unsigned index, CellPtr pCell) | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | [inline, virtual] |
| AddCellWriter() | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | [inline] |
| AddCellWriter(boost::shared_ptr< AbstractCellWriter< ELEMENT_DIM, SPACE_DIM > > pCellWriter) | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | [inline] |
| AbstractCentreBasedCellPopulation< DIM >::AddNode(Node< SPACE_DIM > *pNewNode)=0 | AbstractOffLatticeCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | [pure virtual] |
| AddPopulationWriter() | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | [inline] |
| AddPopulationWriter(boost::shared_ptr< AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM > > pPopulationWriter) | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | [inline] |
| AddReceivedCells() | NodeBasedCellPopulation< DIM > | [inline] |
| Begin() | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | [inline] |
| boost::serialization::access class | NodeBasedCellPopulationWithParticles< DIM > | [friend] |
| Clear() | NodeBasedCellPopulation< DIM > | [inline] |
| CloseWritersFiles() | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | [inline] |
| CreateCellPair(CellPtr pCell1, CellPtr pCell2) | AbstractCentreBasedCellPopulation< DIM > | |
| CreateOrderedPair(unsigned index1, unsigned index2) | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | [inline] |
| End() | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetAbsoluteMovementThreshold() | AbstractOffLatticeCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | |
| GetCellAncestors() | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetCellCyclePhaseCount() | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetCellMutationStateCount() | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetCellNodePair(unsigned nodeIndex) | NodeBasedCellPopulation< DIM > | [inline] |
| GetCellProliferativeTypeCount() | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetCellPropertyRegistry() | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetCellsUsingLocationIndex(unsigned index) | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetCellUsingLocationIndex(unsigned index) | NodeBasedCellPopulation< DIM > | [inline, virtual] |
| GetCentroidOfCellPopulation() | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetDampingConstant(unsigned nodeIndex) | AbstractCentreBasedCellPopulation< DIM > | [virtual] |
| GetDampingConstantMutant() | AbstractOffLatticeCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | |
| GetDampingConstantNormal() | AbstractOffLatticeCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | |
| GetIdentifier() const | Identifiable | |
| GetLocationIndexUsingCell(CellPtr pCell) | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetLocationOfCellCentre(CellPtr pCell) | AbstractCentreBasedCellPopulation< DIM > | [virtual] |
| GetMechanicsCutOffLength() | NodeBasedCellPopulation< DIM > | [inline] |
| GetMeinekeDivisionSeparation() | AbstractCentreBasedCellPopulation< DIM > | |
| GetNeighbouringLocationIndices(CellPtr pCell) | AbstractCentreBasedCellPopulation< DIM > | [virtual] |
| GetNeighbouringNodeIndices(unsigned index) | NodeBasedCellPopulation< DIM > | [inline, virtual] |
| GetNode(unsigned index) | NodeBasedCellPopulation< DIM > | [inline, virtual] |
| GetNodeCorrespondingToCell(CellPtr pCell) | AbstractCentreBasedCellPopulation< DIM > | |
| GetNumAllCells() | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetNumNodes() | NodeBasedCellPopulation< DIM > | [inline, virtual] |
| GetNumRealCells() | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetOutputResultsForChasteVisualizer() | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetParticleIndices() | NodeBasedCellPopulationWithParticles< DIM > | [inline] |
| GetReceivedCells() | NodeBasedCellPopulation< DIM > | [inline] |
| GetSizeOfCellPopulation() | NodeBasedCellPopulation< DIM > | [inline] |
| GetUseVariableRadii() | NodeBasedCellPopulation< DIM > | [inline] |
| GetVolumeOfCell(CellPtr pCell) | NodeBasedCellPopulation< DIM > | [inline, virtual] |
| GetWidth(const unsigned &rDimension) | NodeBasedCellPopulation< DIM > | [inline, virtual] |
| HasWriter() const | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | [inline] |
| InitialiseCells() | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | [inline] |
| IsCellAssociatedWithADeletedLocation(CellPtr pCell) | AbstractCentreBasedCellPopulation< DIM > | [virtual] |
| IsCellAttachedToLocationIndex(unsigned index) | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | [inline] |
| IsGhostNode(unsigned index) | AbstractCentreBasedCellPopulation< DIM > | [virtual] |
| IsMarkedSpring(const std::pair< CellPtr, CellPtr > &rCellPair) | AbstractCentreBasedCellPopulation< DIM > | |
| IsParticle(unsigned index) | NodeBasedCellPopulationWithParticles< DIM > | [inline, virtual] |
| IsRoomToDivide(CellPtr pCell) | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | [inline, virtual] |
| mAbsoluteMovementThreshold | AbstractOffLatticeCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | [protected] |
| MarkSpring(std::pair< CellPtr, CellPtr > &rCellPair) | AbstractCentreBasedCellPopulation< DIM > | |
| mCellLocationMap | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | [protected] |
| mCellPopulationCountWriters | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | [protected] |
| mCellPopulationWriters | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | [protected] |
| mCells | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | [protected] |
| mCellWriters | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | [protected] |
| mCentroid | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | [protected] |
| mDampingConstantMutant | AbstractOffLatticeCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | [protected] |
| mDampingConstantNormal | AbstractOffLatticeCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | [protected] |
| mLocationCellMap | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | [protected] |
| mMarkedSprings | AbstractCentreBasedCellPopulation< DIM > | [protected] |
| mMeinekeDivisionSeparation | AbstractCentreBasedCellPopulation< DIM > | [protected] |
| mOutputResultsForChasteVisualizer | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | [protected] |
| MoveCellInLocationMap(CellPtr pCell, unsigned old_index, unsigned new_index) | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | [inline] |
| mpCellPropertyRegistry | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | [protected] |
| mpNodesOnlyMesh | NodeBasedCellPopulation< DIM > | [protected] |
| mpVtkMetaFile | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | [protected] |
| mrMesh | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | [protected] |
| NodeBasedCellPopulation(NodesOnlyMesh< DIM > &rMesh, std::vector< CellPtr > &rCells, const std::vector< unsigned > locationIndices=std::vector< unsigned >(), bool deleteMesh=false, bool validate=true) | NodeBasedCellPopulation< DIM > | [inline] |
| NodeBasedCellPopulation(NodesOnlyMesh< DIM > &rMesh) | NodeBasedCellPopulation< DIM > | [inline] |
| NodeBasedCellPopulationWithParticles(NodesOnlyMesh< DIM > &rMesh, std::vector< CellPtr > &rCells, const std::vector< unsigned > locationIndices=std::vector< unsigned >(), bool deleteMesh=false) | NodeBasedCellPopulationWithParticles< DIM > | [inline] |
| NodeBasedCellPopulationWithParticles(NodesOnlyMesh< DIM > &rMesh) | NodeBasedCellPopulationWithParticles< DIM > | [inline] |
| NonBlockingSendCellsToNeighbourProcesses() | NodeBasedCellPopulation< DIM > | [inline] |
| OpenWritersFiles(OutputFileHandler &rOutputFileHandler) | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | [inline, virtual] |
| OutputCellPopulationInfo(out_stream &rParamsFile) | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | [inline] |
| OutputCellPopulationParameters(out_stream &rParamsFile) | NodeBasedCellPopulationWithParticles< DIM > | [inline, virtual] |
| RemoveCellUsingLocationIndex(unsigned index, CellPtr pCell) | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | [inline, virtual] |
| RemoveDeadCells() | NodeBasedCellPopulation< DIM > | [inline, virtual] |
| rGetCells() | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | [inline] |
| rGetMesh() | NodeBasedCellPopulation< DIM > | [inline] |
| rGetMesh() const | NodeBasedCellPopulation< DIM > | [inline] |
| rGetNodePairs() | NodeBasedCellPopulation< DIM > | [inline, virtual] |
| SendCellsToNeighbourProcesses() | NodeBasedCellPopulation< DIM > | [inline] |
| serialize(Archive &archive, const unsigned int version) | NodeBasedCellPopulationWithParticles< DIM > | [inline, private] |
| SetAbsoluteMovementThreshold(double absoluteMovementThreshold) | AbstractOffLatticeCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | |
| SetCellAncestorsToLocationIndices() | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | [inline] |
| SetCellUsingLocationIndex(unsigned index, CellPtr pCell) | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | [inline] |
| SetDampingConstantMutant(double dampingConstantMutant) | AbstractOffLatticeCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | |
| SetDampingConstantNormal(double dampingConstantNormal) | AbstractOffLatticeCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | |
| SetDataOnAllCells(const std::string &dataName, double dataValue) | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | [inline] |
| SetDefaultCellMutationStateAndProliferativeTypeOrdering() | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | [inline] |
| SetLoadBalanceFrequency(unsigned loadBalanceFrequency) | NodeBasedCellPopulation< DIM > | [inline] |
| SetLoadBalanceMesh(bool loadBalanceMesh) | NodeBasedCellPopulation< DIM > | [inline] |
| SetMeinekeDivisionSeparation(double divisionSeparation) | AbstractCentreBasedCellPopulation< DIM > | |
| SetNode(unsigned nodeIndex, ChastePoint< DIM > &rNewLocation) | NodeBasedCellPopulation< DIM > | [inline] |
| AbstractCentreBasedCellPopulation< DIM >::SetNode(unsigned nodeIndex, ChastePoint< SPACE_DIM > &rNewLocation)=0 | AbstractOffLatticeCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | [pure virtual] |
| SetOutputResultsForChasteVisualizer(bool outputResultsForChasteVisualizer) | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | [inline] |
| SetParticles(const std::set< unsigned > &rParticleIndices) | NodeBasedCellPopulationWithParticles< DIM > | [inline, private] |
| SetUseVariableRadii(bool useVariableRadii=true) | NodeBasedCellPopulation< DIM > | [inline] |
| TestNodeBasedCellPopulationWithParticles (defined in NodeBasedCellPopulationWithParticles< DIM >) | NodeBasedCellPopulationWithParticles< DIM > | [friend] |
| UnmarkSpring(std::pair< CellPtr, CellPtr > &rCellPair) | AbstractCentreBasedCellPopulation< DIM > | |
| Update(bool hasHadBirthsOrDeaths=true) | NodeBasedCellPopulation< DIM > | [inline, virtual] |
| UpdateCellProcessLocation() | NodeBasedCellPopulation< DIM > | [inline, virtual] |
| UpdateNodeLocations(double dt) | NodeBasedCellPopulationWithParticles< DIM > | [inline, virtual] |
| UpdateParticlePositions(double dt) | NodeBasedCellPopulationWithParticles< DIM > | [inline] |
| UpdateParticlesAfterReMesh(NodeMap &rMap) | NodeBasedCellPopulationWithParticles< DIM > | [inline, virtual] |
| Validate() | NodeBasedCellPopulationWithParticles< DIM > | [inline, protected, virtual] |
| WriteResultsToFiles(const std::string &rDirectory) | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | [inline, virtual] |
| WriteVtkResultsToFile(const std::string &rDirectory) | NodeBasedCellPopulationWithParticles< DIM > | [inline, virtual] |
| ~AbstractCellPopulation() | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | [inline, virtual] |
| ~Identifiable() | Identifiable | [virtual] |
| ~NodeBasedCellPopulation() | NodeBasedCellPopulation< DIM > | [inline, virtual] |
