, including all inherited members.
AbstractCellBasedSimulation(AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > &rCellPopulation, bool deleteCellPopulationInDestructor=false, bool initialiseCells=true) | AbstractCellBasedSimulation< DIM > | |
AddCaUpdateRule(boost::shared_ptr< AbstractCaUpdateRule< DIM > > pUpdateRule) | OnLatticeSimulation< DIM > | [inline] |
AddCellKiller(boost::shared_ptr< AbstractCellKiller< ELEMENT_DIM > > pCellKiller) | AbstractCellBasedSimulation< DIM > | |
AddPottsUpdateRule(boost::shared_ptr< AbstractPottsUpdateRule< DIM > > pUpdateRule) | OnLatticeSimulation< DIM > | [inline] |
AddSimulationModifier(boost::shared_ptr< AbstractCellBasedSimulationModifier< ELEMENT_DIM, ELEMENT_DIM > > pSimulationModifier) | AbstractCellBasedSimulation< DIM > | |
boost::serialization::access class | OnLatticeSimulation< DIM > | [friend] |
CalculateCellDivisionVector(CellPtr pParentCell) | OnLatticeSimulation< DIM > | [inline, protected, virtual] |
DoCellBirth() | AbstractCellBasedSimulation< DIM > | [protected, virtual] |
DoCellRemoval() | AbstractCellBasedSimulation< DIM > | [protected] |
GetCellBasedPdeHandler() | AbstractCellBasedSimulation< DIM > | |
GetDt() | AbstractCellBasedSimulation< DIM > | |
GetIdentifier() const | Identifiable | |
GetNodeLocation(const unsigned &rNodeIndex) | AbstractCellBasedSimulation< DIM > | |
GetNumBirths() | AbstractCellBasedSimulation< DIM > | |
GetNumDeaths() | AbstractCellBasedSimulation< DIM > | |
GetOutputCellVelocities() | AbstractCellBasedSimulation< DIM > | |
GetOutputDirectory() | AbstractCellBasedSimulation< DIM > | |
GetOutputDivisionLocations() | AbstractCellBasedSimulation< DIM > | |
GetSimulationModifiers() | AbstractCellBasedSimulation< DIM > | |
GetUpdateCellPopulationRule() | AbstractCellBasedSimulation< DIM > | |
mCellKillers | AbstractCellBasedSimulation< DIM > | [protected] |
mDeleteCellPopulationInDestructor | AbstractCellBasedSimulation< DIM > | [protected] |
mDt | AbstractCellBasedSimulation< DIM > | [protected] |
mEndTime | AbstractCellBasedSimulation< DIM > | [protected] |
mInitialiseCells | AbstractCellBasedSimulation< DIM > | [protected] |
mNoBirth | AbstractCellBasedSimulation< DIM > | [protected] |
mNumBirths | AbstractCellBasedSimulation< DIM > | [protected] |
mNumDeaths | AbstractCellBasedSimulation< DIM > | [protected] |
mOutputCellVelocities | AbstractCellBasedSimulation< DIM > | [protected] |
mOutputDirectory | AbstractCellBasedSimulation< DIM > | [protected] |
mOutputDivisionLocations | AbstractCellBasedSimulation< DIM > | [protected] |
mpCellBasedPdeHandler | AbstractCellBasedSimulation< DIM > | [protected] |
mpCellVelocitiesFile | AbstractCellBasedSimulation< DIM > | [protected] |
mpDivisionLocationFile | AbstractCellBasedSimulation< DIM > | [protected] |
mpVizSetupFile | AbstractCellBasedSimulation< DIM > | [protected] |
mrCellPopulation | AbstractCellBasedSimulation< DIM > | [protected] |
mSamplingTimestepMultiple | AbstractCellBasedSimulation< DIM > | [protected] |
mSimulationModifiers | AbstractCellBasedSimulation< DIM > | [protected] |
mSimulationOutputDirectory | AbstractCellBasedSimulation< DIM > | [protected] |
mUpdateCellPopulation | AbstractCellBasedSimulation< DIM > | [protected] |
OnLatticeSimulation(AbstractCellPopulation< DIM > &rCellPopulation, bool deleteCellPopulationInDestructor=false, bool initialiseCells=true) | OnLatticeSimulation< DIM > | [inline] |
OutputAdditionalSimulationSetup(out_stream &rParamsFile) | OnLatticeSimulation< DIM > | [inline, virtual] |
OutputSimulationParameters(out_stream &rParamsFile) | OnLatticeSimulation< DIM > | [inline, virtual] |
OutputSimulationSetup() | AbstractCellBasedSimulation< DIM > | [protected] |
RemoveAllCaUpdateRules() | OnLatticeSimulation< DIM > | [inline] |
RemoveAllCellKillers() | AbstractCellBasedSimulation< DIM > | |
RemoveAllPottsUpdateRules() | OnLatticeSimulation< DIM > | [inline] |
rGetCellPopulation() | AbstractCellBasedSimulation< DIM > | |
rGetCellPopulation() const | AbstractCellBasedSimulation< DIM > | |
serialize(Archive &archive, const unsigned int version) | OnLatticeSimulation< DIM > | [inline, private] |
SetCellBasedPdeHandler(CellBasedPdeHandler< ELEMENT_DIM > *pCellBasedPdeHandler) | AbstractCellBasedSimulation< DIM > | |
SetDt(double dt) | AbstractCellBasedSimulation< DIM > | |
SetEndTime(double endTime) | AbstractCellBasedSimulation< DIM > | |
SetNoBirth(bool noBirth) | AbstractCellBasedSimulation< DIM > | |
SetOutputCellVelocities(bool outputCellVelocities) | AbstractCellBasedSimulation< DIM > | |
SetOutputDirectory(std::string outputDirectory) | AbstractCellBasedSimulation< DIM > | |
SetOutputDivisionLocations(bool outputDivisionLocations) | AbstractCellBasedSimulation< DIM > | |
SetSamplingTimestepMultiple(unsigned samplingTimestepMultiple) | AbstractCellBasedSimulation< DIM > | |
SetUpdateCellPopulationRule(bool updateCellPopulation) | AbstractCellBasedSimulation< DIM > | |
SetupSolve() | AbstractCellBasedSimulation< DIM > | [inline, protected, virtual] |
Solve() | AbstractCellBasedSimulation< DIM > | |
StoppingEventHasOccurred() | AbstractCellBasedSimulation< DIM > | [protected, virtual] |
UpdateCellLocationsAndTopology() | OnLatticeSimulation< DIM > | [inline, protected, virtual] |
UpdateCellPopulation() | OnLatticeSimulation< DIM > | [inline, protected, virtual] |
WriteVisualizerSetupFile() | OnLatticeSimulation< DIM > | [inline, protected, virtual] |
~AbstractCellBasedSimulation() | AbstractCellBasedSimulation< DIM > | [virtual] |
~Identifiable() | Identifiable | [virtual] |