AbstractCardiacMechanicsSolver.hpp

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*/

#ifndef ABSTRACTCARDIACMECHANICSSOLVER_HPP_
#define ABSTRACTCARDIACMECHANICSSOLVER_HPP_

#include <map>
#include "IncompressibleNonlinearElasticitySolver.hpp"
#include "CompressibleNonlinearElasticitySolver.hpp"
#include "QuadraticBasisFunction.hpp"
#include "LinearBasisFunction.hpp"
#include "AbstractContractionModel.hpp"
#include "FibreReader.hpp"
#include "FineCoarseMeshPair.hpp"
#include "AbstractCardiacMechanicsSolverInterface.hpp"
#include "HeartRegionCodes.hpp"
#include "ElectroMechanicsProblemDefinition.hpp"


typedef struct DataAtQuadraturePoint_
{
    AbstractContractionModel* ContractionModel; 
//    bool Active;/**<whether this quad point is active or not*/
    double Stretch; 
    double StretchLastTimeStep; 
} DataAtQuadraturePoint;


template<class ELASTICITY_SOLVER, unsigned DIM>
class AbstractCardiacMechanicsSolver : public ELASTICITY_SOLVER, public AbstractCardiacMechanicsSolverInterface<DIM>
{
protected:
    static const unsigned NUM_VERTICES_PER_ELEMENT = ELASTICITY_SOLVER::NUM_VERTICES_PER_ELEMENT; 
    std::map<unsigned,DataAtQuadraturePoint> mQuadPointToDataAtQuadPointMap;

    std::map<unsigned,DataAtQuadraturePoint>::iterator mMapIterator;

    FineCoarseMeshPair<DIM>* mpMeshPair;

    unsigned mTotalQuadPoints;

    double mCurrentTime;

    double mNextTime;

    double mOdeTimestep;

    c_matrix<double,DIM,DIM> mConstantFibreSheetDirections;

    std::vector<c_matrix<double,DIM,DIM> >* mpVariableFibreSheetDirections;

    bool mFibreSheetDirectionsDefinedByQuadraturePoint;

    c_vector<double,DIM> mCurrentElementFibreDirection;

    c_vector<double,DIM> mCurrentElementSheetDirection;

    c_vector<double,DIM> mCurrentElementSheetNormalDirection;


    ElectroMechanicsProblemDefinition<DIM>& mrElectroMechanicsProblemDefinition;

    virtual bool IsImplicitSolver()=0;


    void AddActiveStressAndStressDerivative(c_matrix<double,DIM,DIM>& rC,
                                            unsigned elementIndex,
                                            unsigned currentQuadPointGlobalIndex,
                                            c_matrix<double,DIM,DIM>& rT,
                                            FourthOrderTensor<DIM,DIM,DIM,DIM>& rDTdE,
                                            bool addToDTdE);


    void SetupChangeOfBasisMatrix(unsigned elementIndex, unsigned currentQuadPointGlobalIndex);

    void Initialise();

    virtual void GetActiveTensionAndTensionDerivs(double currentFibreStretch,
                                                  unsigned currentQuadPointGlobalIndex,
                                                  bool assembleJacobian,
                                                  double& rActiveTension,
                                                  double& rDerivActiveTensionWrtLambda,
                                                  double& rDerivActiveTensionWrtDLambdaDt)=0;
public:
    AbstractCardiacMechanicsSolver(QuadraticMesh<DIM>& rQuadMesh,
                                   ElectroMechanicsProblemDefinition<DIM>& rProblemDefinition,
                                   std::string outputDirectory);

    virtual ~AbstractCardiacMechanicsSolver();

    void SetFineCoarseMeshPair(FineCoarseMeshPair<DIM>* pMeshPair);

    unsigned GetTotalNumQuadPoints()
    {
        return mTotalQuadPoints;
    }

    virtual GaussianQuadratureRule<DIM>* GetQuadratureRule()
    {
        return this->mpQuadratureRule;
    }

    std::map<unsigned,DataAtQuadraturePoint>& rGetQuadPointToDataAtQuadPointMap()
    {
        return mQuadPointToDataAtQuadPointMap;
    }


    void SetConstantFibreSheetDirections(const c_matrix<double,DIM,DIM>& rFibreSheetMatrix);

    void SetVariableFibreSheetDirections(const FileFinder& rOrthoFile, bool definedPerQuadraturePoint);

    void SetCalciumAndVoltage(std::vector<double>& rCalciumConcentrations,
                              std::vector<double>& rVoltages);

    virtual void Solve(double time, double nextTime, double odeTimestep)=0;



    void ComputeDeformationGradientAndStretchInEachElement(std::vector<c_matrix<double,DIM,DIM> >& rDeformationGradients,
                                                           std::vector<double>& rStretches);
};


#endif /*ABSTRACTCARDIACMECHANICSSOLVER_HPP_*/