CellCycleModelOdeSolver.hpp

/*

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*/

#ifndef CELLCYCLEMODELODESOLVER_HPP_
#define CELLCYCLEMODELODESOLVER_HPP_

#include <boost/utility.hpp>

#include "ChasteSerialization.hpp"

#include "AbstractCellCycleModelOdeSolver.hpp"
#include "BackwardEulerIvpOdeSolver.hpp"
#include "CvodeAdaptor.hpp"

template <class CELL_CYCLE_MODEL, class ODE_SOLVER>
class CellCycleModelOdeSolver : public AbstractCellCycleModelOdeSolver, private boost::noncopyable
{
private:
    static boost::shared_ptr<CellCycleModelOdeSolver<CELL_CYCLE_MODEL, ODE_SOLVER> > mpInstance;

    CellCycleModelOdeSolver();

    friend class boost::serialization::access;
    template<class Archive>
    void serialize(Archive & archive, const unsigned int version)
    {
        archive & boost::serialization::base_object<AbstractCellCycleModelOdeSolver>(*this);
        archive & mpInstance;
    }

public:
    static boost::shared_ptr<CellCycleModelOdeSolver<CELL_CYCLE_MODEL, ODE_SOLVER> > Instance();

    bool IsSetUp();

    void Initialise();

    virtual bool IsAdaptive();
};

template<class CELL_CYCLE_MODEL, class ODE_SOLVER>
boost::shared_ptr<CellCycleModelOdeSolver<CELL_CYCLE_MODEL, ODE_SOLVER> > CellCycleModelOdeSolver<CELL_CYCLE_MODEL, ODE_SOLVER>::mpInstance;


template<class CELL_CYCLE_MODEL, class ODE_SOLVER>
CellCycleModelOdeSolver<CELL_CYCLE_MODEL, ODE_SOLVER>::CellCycleModelOdeSolver()
    : AbstractCellCycleModelOdeSolver()
{
}

template<class CELL_CYCLE_MODEL, class ODE_SOLVER>
boost::shared_ptr<CellCycleModelOdeSolver<CELL_CYCLE_MODEL, ODE_SOLVER> > CellCycleModelOdeSolver<CELL_CYCLE_MODEL, ODE_SOLVER>::Instance()
{
    if (!mpInstance)
    {
        mpInstance.reset(new CellCycleModelOdeSolver<CELL_CYCLE_MODEL, ODE_SOLVER>);
    }
    return mpInstance;
}

template<class CELL_CYCLE_MODEL, class ODE_SOLVER>
bool CellCycleModelOdeSolver<CELL_CYCLE_MODEL, ODE_SOLVER>::IsSetUp()
{
    return mpOdeSolver;
}

template<class CELL_CYCLE_MODEL, class ODE_SOLVER>
void CellCycleModelOdeSolver<CELL_CYCLE_MODEL, ODE_SOLVER>::Initialise()
{
    mpOdeSolver.reset(new ODE_SOLVER);
    // If this is a CVODE solver we need to tell it to reset. Otherwise
    // the fact this is a singleton will lead to all sorts of problems
    // as CVODE will have the internal state for the wrong ODE system!
#ifdef CHASTE_CVODE
    if (boost::dynamic_pointer_cast<CvodeAdaptor>(mpOdeSolver))
    {
        (boost::static_pointer_cast<CvodeAdaptor>(mpOdeSolver))->SetForceReset(true);
    }
#endif //CHASTE_CVODE
}

template<class CELL_CYCLE_MODEL, class ODE_SOLVER>
bool CellCycleModelOdeSolver<CELL_CYCLE_MODEL, ODE_SOLVER>::IsAdaptive()
{
    return AbstractCellCycleModelOdeSolver::IsAdaptive();
}


template<class CELL_CYCLE_MODEL>
class CellCycleModelOdeSolver<CELL_CYCLE_MODEL, BackwardEulerIvpOdeSolver> : public AbstractCellCycleModelOdeSolver, private boost::noncopyable
{
private:
    static boost::shared_ptr<CellCycleModelOdeSolver<CELL_CYCLE_MODEL, BackwardEulerIvpOdeSolver> > mpInstance;

    CellCycleModelOdeSolver();

    friend class boost::serialization::access;
    template<class Archive>
    void serialize(Archive & archive, const unsigned int version)
    {
        archive & boost::serialization::base_object<AbstractCellCycleModelOdeSolver>(*this);
        archive & mpInstance;
    }

public:
    static boost::shared_ptr<CellCycleModelOdeSolver<CELL_CYCLE_MODEL, BackwardEulerIvpOdeSolver> > Instance();

    bool IsSetUp();

    void Initialise();

    void Reset();
};

template<class CELL_CYCLE_MODEL>
boost::shared_ptr<CellCycleModelOdeSolver<CELL_CYCLE_MODEL, BackwardEulerIvpOdeSolver> > CellCycleModelOdeSolver<CELL_CYCLE_MODEL, BackwardEulerIvpOdeSolver>::mpInstance;

template<class CELL_CYCLE_MODEL>
CellCycleModelOdeSolver<CELL_CYCLE_MODEL, BackwardEulerIvpOdeSolver>::CellCycleModelOdeSolver()
    : AbstractCellCycleModelOdeSolver()
{
}

template<class CELL_CYCLE_MODEL>
boost::shared_ptr<CellCycleModelOdeSolver<CELL_CYCLE_MODEL, BackwardEulerIvpOdeSolver> > CellCycleModelOdeSolver<CELL_CYCLE_MODEL, BackwardEulerIvpOdeSolver>::Instance()
{
    if (!mpInstance)
    {
        mpInstance.reset(new CellCycleModelOdeSolver<CELL_CYCLE_MODEL, BackwardEulerIvpOdeSolver>);
    }
    return mpInstance;
}

template<class CELL_CYCLE_MODEL>
bool CellCycleModelOdeSolver<CELL_CYCLE_MODEL, BackwardEulerIvpOdeSolver>::IsSetUp()
{
    return mpOdeSolver && (mSizeOfOdeSystem != UNSIGNED_UNSET);
}

template<class CELL_CYCLE_MODEL>
void CellCycleModelOdeSolver<CELL_CYCLE_MODEL, BackwardEulerIvpOdeSolver>::Initialise()
{
    if (mSizeOfOdeSystem == UNSIGNED_UNSET)
    {
        EXCEPTION("SetSizeOfOdeSystem() must be called before calling Initialise()");
    }
    mpOdeSolver.reset(new BackwardEulerIvpOdeSolver(mSizeOfOdeSystem));
}

template<class CELL_CYCLE_MODEL>
void CellCycleModelOdeSolver<CELL_CYCLE_MODEL, BackwardEulerIvpOdeSolver>::Reset()
{
    mSizeOfOdeSystem = UNSIGNED_UNSET;
    mpOdeSolver.reset();
}

#endif /*CELLCYCLEMODELODESOLVER_HPP_*/