Chaste  Release::3.4
CellLabelWriter.cpp
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35 
36 #include "CellLabelWriter.hpp"
37 #include "AbstractCellPopulation.hpp"
38 #include "CellLabel.hpp"
39 
40 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
42  : AbstractCellWriter<ELEMENT_DIM, SPACE_DIM>("results.vizlabels")
43 {
44  this->mVtkCellDataName = "Cell labels";
45 }
46 
47 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
49 {
50  double label = 0.0;
51  if (pCell->HasCellProperty<CellLabel>())
52  {
53  CellPropertyCollection collection = pCell->rGetCellPropertyCollection().GetProperties<CellLabel>();
54  boost::shared_ptr<CellLabel> p_label = boost::static_pointer_cast<CellLabel>(collection.GetProperty());
55  label = p_label->GetColour();
56  }
57  return label;
58 }
59 
60 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
62 {
63  unsigned label = 0;
64  if (pCell->HasCellProperty<CellLabel>())
65  {
66  CellPropertyCollection collection = pCell->rGetCellPropertyCollection().GetProperties<CellLabel>();
67  boost::shared_ptr<CellLabel> p_label = boost::static_pointer_cast<CellLabel>(collection.GetProperty());
68  label = p_label->GetColour();
69  }
70 
71  *this->mpOutStream << " " << label;
72 
73  unsigned location_index = pCellPopulation->GetLocationIndexUsingCell(pCell);
74  *this->mpOutStream << " " << location_index;
75 
76  c_vector<double, SPACE_DIM> coords = pCellPopulation->GetLocationOfCellCentre(pCell);
77  for (unsigned i=0; i<SPACE_DIM; i++)
78  {
79  *this->mpOutStream << " " << coords[i];
80  }
81 }
82 
83 // Explicit instantiation
84 template class CellLabelWriter<1,1>;
85 template class CellLabelWriter<1,2>;
86 template class CellLabelWriter<2,2>;
87 template class CellLabelWriter<1,3>;
88 template class CellLabelWriter<2,3>;
89 template class CellLabelWriter<3,3>;
90 
92 // Declare identifier for the serializer
unsigned GetLocationIndexUsingCell(CellPtr pCell)
boost::shared_ptr< AbstractCellProperty > GetProperty() const
CellPropertyCollection GetProperties() const
double GetCellDataForVtkOutput(CellPtr pCell, AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation)
#define EXPORT_TEMPLATE_CLASS_ALL_DIMS(CLASS)
virtual c_vector< double, SPACE_DIM > GetLocationOfCellCentre(CellPtr pCell)=0
virtual void VisitCell(CellPtr pCell, AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation)