Chaste  Release::3.4
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CellPropertyCollection Class Reference

#include <CellPropertyCollection.hpp>

+ Collaboration diagram for CellPropertyCollection:

Public Types

typedef CollectionType::iterator Iterator
 

Public Member Functions

 CellPropertyCollection ()
 
void AddProperty (const boost::shared_ptr< AbstractCellProperty > &rProp)
 
CellPropertyRegistry * GetCellPropertyRegistry ()
 
void SetCellPropertyRegistry (CellPropertyRegistry *pRegistry)
 
bool HasProperty (const boost::shared_ptr< AbstractCellProperty > &rProp) const
 
template<typename CLASS >
bool HasProperty () const
 
template<typename BASECLASS >
bool HasPropertyType () const
 
template<typename CLASS >
void RemoveProperty ()
 
void RemoveProperty (const boost::shared_ptr< AbstractCellProperty > &rProp)
 
unsigned GetSize () const
 
Iterator Begin ()
 
Iterator End ()
 
boost::shared_ptr
< AbstractCellProperty > 		GetProperty () const
 
template<typename CLASS >
CellPropertyCollection GetProperties () const
 
template<typename BASECLASS >
CellPropertyCollection GetPropertiesType () const
 

Private Types

typedef std::set
< boost::shared_ptr
< AbstractCellProperty > > 		CollectionType
 
typedef
CollectionType::const_iterator 		ConstIteratorType
 
typedef CollectionType::iterator IteratorType
 

Private Member Functions

template<class Archive >
void serialize (Archive &archive, const unsigned int version)
 

Private Attributes

CollectionType mProperties
 
CellPropertyRegistry * mpCellPropertyRegistry
 

Friends

class boost::serialization::access
 

Detailed Description

Cell property collection class.

Contains methods for accessing and interrogating a set of cell properties.

Definition at line 55 of file CellPropertyCollection.hpp.

Member Typedef Documentation

typedef std::set<boost::shared_ptr<AbstractCellProperty> > CellPropertyCollection::CollectionType
private

The type of container used to store properties

Definition at line 59 of file CellPropertyCollection.hpp.

typedef CollectionType::const_iterator CellPropertyCollection::ConstIteratorType
private

Type of a const iterator over the container

Definition at line 62 of file CellPropertyCollection.hpp.

typedef CollectionType::iterator CellPropertyCollection::Iterator

An iterator type over this collection. Don't rely on the particular implementation of the iterator.

Definition at line 191 of file CellPropertyCollection.hpp.

typedef CollectionType::iterator CellPropertyCollection::IteratorType
private

Type of an iterator over the container

Definition at line 65 of file CellPropertyCollection.hpp.

Constructor & Destructor Documentation

CellPropertyCollection::CellPropertyCollection ( )

Create an empty collection of cell properties.

Definition at line 38 of file CellPropertyCollection.cpp.

Member Function Documentation

void CellPropertyCollection::AddProperty ( const boost::shared_ptr< AbstractCellProperty > &  rProp)

Add a new property to this collection.

Parameters
rPropthe property to add

Definition at line 61 of file CellPropertyCollection.cpp.

References EXCEPTION, HasProperty(), and mProperties.

Referenced by Cell::AddCellProperty(), Cell::Cell(), Cell::Divide(), GetProperties(), and GetPropertiesType().

CellPropertyCollection::Iterator CellPropertyCollection::Begin ( )
Returns
an Iterator to the start of this collection.

Definition at line 93 of file CellPropertyCollection.cpp.

References mProperties.

Referenced by Cell::Cell(), Cell::Kill(), and Cell::RemoveCellProperty().

CellPropertyCollection::Iterator CellPropertyCollection::End ( )
Returns
an Iterator to one past the end of this collection.

Definition at line 98 of file CellPropertyCollection.cpp.

References mProperties.

Referenced by Cell::Cell(), Cell::Kill(), and Cell::RemoveCellProperty().

CellPropertyRegistry * CellPropertyCollection::GetCellPropertyRegistry ( )
Returns
a pointer to the CellPropertyRegistry (as assigned to this cell in the AbstractCellPopulation constructor).

Definition at line 43 of file CellPropertyCollection.cpp.

References CellPropertyRegistry::Instance(), and mpCellPropertyRegistry.

Referenced by Cell::StartApoptosis().

template<typename CLASS >
CellPropertyCollection CellPropertyCollection::GetProperties ( ) const
inline
Returns
a sub-collection containing all our properties that are instances of the given class.

Definition at line 214 of file CellPropertyCollection.hpp.

References AddProperty(), and mProperties.

Referenced by CellLabelWriter< ELEMENT_DIM, SPACE_DIM >::GetCellDataForVtkOutput(), CellMutationStatesWriter< ELEMENT_DIM, SPACE_DIM >::GetCellDataForVtkOutput(), CellProliferativeTypesWriter< ELEMENT_DIM, SPACE_DIM >::GetCellDataForVtkOutput(), CellMutationStatesWriter< ELEMENT_DIM, SPACE_DIM >::VisitCell(), CellLabelWriter< ELEMENT_DIM, SPACE_DIM >::VisitCell(), and CellProliferativeTypesWriter< ELEMENT_DIM, SPACE_DIM >::VisitCell().

template<typename BASECLASS >
CellPropertyCollection CellPropertyCollection::GetPropertiesType ( ) const
inline
Returns
a sub-collection containing all our properties that are instances of the given class or any of its subclasses.

Definition at line 232 of file CellPropertyCollection.hpp.

References AddProperty(), and mProperties.

Referenced by Cell::GetAncestor(), Cell::GetCellData(), Cell::GetCellId(), Cell::GetCellProliferativeType(), Cell::GetCellVecData(), Cell::GetMutationState(), and Cell::SetAncestor().

boost::shared_ptr< AbstractCellProperty > CellPropertyCollection::GetProperty ( ) const
Returns
If this collection contains a single property, then return it. Otherwise, throws an exception.

Definition at line 103 of file CellPropertyCollection.cpp.

References EXCEPTION, GetSize(), and mProperties.

Referenced by Cell::GetAncestor(), Cell::GetCellData(), CellMutationStatesWriter< ELEMENT_DIM, SPACE_DIM >::GetCellDataForVtkOutput(), CellLabelWriter< ELEMENT_DIM, SPACE_DIM >::GetCellDataForVtkOutput(), CellProliferativeTypesWriter< ELEMENT_DIM, SPACE_DIM >::GetCellDataForVtkOutput(), Cell::GetCellId(), Cell::GetCellProliferativeType(), Cell::GetCellVecData(), Cell::GetMutationState(), CellMutationStatesWriter< ELEMENT_DIM, SPACE_DIM >::VisitCell(), CellLabelWriter< ELEMENT_DIM, SPACE_DIM >::VisitCell(), and CellProliferativeTypesWriter< ELEMENT_DIM, SPACE_DIM >::VisitCell().

unsigned CellPropertyCollection::GetSize ( ) const
Returns
the size of this container.

Definition at line 88 of file CellPropertyCollection.cpp.

References mProperties.

Referenced by Cell::GetAncestor(), Cell::GetCellData(), CellMutationStatesWriter< ELEMENT_DIM, SPACE_DIM >::GetCellDataForVtkOutput(), Cell::GetCellId(), Cell::GetCellProliferativeType(), Cell::GetCellVecData(), Cell::GetMutationState(), GetProperty(), Cell::SetAncestor(), and CellMutationStatesWriter< ELEMENT_DIM, SPACE_DIM >::VisitCell().

bool CellPropertyCollection::HasProperty ( const boost::shared_ptr< AbstractCellProperty > &  rProp) const
Returns
whether this collection contains the given property object.
Parameters
rPropthe property to compare against

Definition at line 70 of file CellPropertyCollection.cpp.

References mProperties.

Referenced by Cell::AddCellProperty(), Cell::Cell(), and Cell::HasCellProperty().

template<typename CLASS >
bool CellPropertyCollection::HasProperty ( ) const
inline
Returns
whether the collection contains a property that has the exact type CLASS.

Should be used like bool healthy = collection.HasProperty<WildTypeCellMutationState>();

Definition at line 127 of file CellPropertyCollection.hpp.

References mProperties.

Referenced by AddProperty().

template<typename BASECLASS >
bool CellPropertyCollection::HasPropertyType ( ) const
inline
Returns
whether the collection contains a property that inherits from BASECLASS.

Should be used like collection.HasPropertyType<AbstractCellMutationState>();

Definition at line 146 of file CellPropertyCollection.hpp.

References mProperties.

Referenced by Cell::Cell(), Cell::Divide(), and Cell::HasCellVecData().

template<typename CLASS >
void CellPropertyCollection::RemoveProperty ( )
inline

Remove a single property of the given type.

Definition at line 162 of file CellPropertyCollection.hpp.

References EXCEPTION, and mProperties.

Referenced by Cell::Divide(), MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >::DivideLongSprings(), Cell::RemoveCellProperty(), Cell::SetCellProliferativeType(), and Cell::SetMutationState().

void CellPropertyCollection::RemoveProperty ( const boost::shared_ptr< AbstractCellProperty > &  rProp)

Remove the given property from this collection.

Parameters
rPropthe property to remove

Definition at line 75 of file CellPropertyCollection.cpp.

References EXCEPTION, and mProperties.

template<class Archive >
void CellPropertyCollection::serialize ( Archive &  archive,
const unsigned int  version 
)
inlineprivate

We don't have any member variables yet, but let's make things easy for the future.

Parameters
archivethe archive
versionthe current version of this class

Definition at line 82 of file CellPropertyCollection.hpp.

References mProperties.

void CellPropertyCollection::SetCellPropertyRegistry ( CellPropertyRegistry *  pRegistry)

Set the CellPropertyRegistry for this cell

Parameters
pRegistryThe cell property registry (assigned in the AbstractCellPopulation constructor).

Definition at line 56 of file CellPropertyCollection.cpp.

References mpCellPropertyRegistry.

Friends And Related Function Documentation

friend class boost::serialization::access
friend

Needed for serialization.

Definition at line 74 of file CellPropertyCollection.hpp.

Member Data Documentation

CellPropertyRegistry* CellPropertyCollection::mpCellPropertyRegistry
private

Cell property registry.

Definition at line 71 of file CellPropertyCollection.hpp.

Referenced by GetCellPropertyRegistry(), and SetCellPropertyRegistry().

CollectionType CellPropertyCollection::mProperties
private

The properties stored in this collection.

Definition at line 68 of file CellPropertyCollection.hpp.

Referenced by AddProperty(), Begin(), End(), GetProperties(), GetPropertiesType(), GetProperty(), GetSize(), HasProperty(), HasPropertyType(), RemoveProperty(), and serialize().

The documentation for this class was generated from the following files: