CellMutationStatesWriter.cpp

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#include "CellMutationStatesWriter.hpp"
#include "AbstractCellPopulation.hpp"

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
CellMutationStatesWriter<ELEMENT_DIM, SPACE_DIM>::CellMutationStatesWriter()
    : AbstractCellWriter<ELEMENT_DIM, SPACE_DIM>("results.vizmutationstates")
{
    this->mVtkCellDataName = "Mutation states";
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
double CellMutationStatesWriter<ELEMENT_DIM, SPACE_DIM>::GetCellDataForVtkOutput(CellPtr pCell, AbstractCellPopulation<ELEMENT_DIM, SPACE_DIM>* pCellPopulation)
{
    double mutation_state = pCell->GetMutationState()->GetColour();

    CellPropertyCollection collection = pCell->rGetCellPropertyCollection();
    CellPropertyCollection label_collection = collection.GetProperties<CellLabel>();

    if (label_collection.GetSize() == 1)
    {
        boost::shared_ptr<CellLabel> p_label = boost::static_pointer_cast<CellLabel>(label_collection.GetProperty());
        mutation_state = p_label->GetColour();
    }

    return mutation_state;
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
void CellMutationStatesWriter<ELEMENT_DIM, SPACE_DIM>::VisitCell(CellPtr pCell, AbstractCellPopulation<ELEMENT_DIM, SPACE_DIM>* pCellPopulation)
{
    double mutation_state = pCell->GetMutationState()->GetColour();

    CellPropertyCollection collection = pCell->rGetCellPropertyCollection();
    CellPropertyCollection label_collection = collection.GetProperties<CellLabel>();

    if (label_collection.GetSize() == 1)
    {
        boost::shared_ptr<CellLabel> p_label = boost::static_pointer_cast<CellLabel>(label_collection.GetProperty());
        mutation_state = p_label->GetColour();
    }

    *this->mpOutStream << mutation_state << " ";
}

// Explicit instantiation
template class CellMutationStatesWriter<1,1>;
template class CellMutationStatesWriter<1,2>;
template class CellMutationStatesWriter<2,2>;
template class CellMutationStatesWriter<1,3>;
template class CellMutationStatesWriter<2,3>;
template class CellMutationStatesWriter<3,3>;

#include "SerializationExportWrapperForCpp.hpp"
// Declare identifier for the serializer
EXPORT_TEMPLATE_CLASS_ALL_DIMS(CellMutationStatesWriter)