Chaste  Release::3.4
VertexMeshWriter.hpp
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35 #ifndef VERTEXMESHWRITER_HPP_
36 #define VERTEXMESHWRITER_HPP_
37 
38 // Forward declaration prevents circular include chain
39 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
40 class VertexMesh;
41 
42 #ifdef CHASTE_VTK
43 //Requires "sudo aptitude install libvtk5-dev" or similar
44 #define _BACKWARD_BACKWARD_WARNING_H 1 //Cut out the strstream deprecated warning for now (gcc4.3)
45 #include <vtkDoubleArray.h>
46 #include <vtkCellData.h>
47 #include <vtkPointData.h>
48 #include <vtkConvexPointSet.h>
49 #include <vtkPolygon.h>
50 #include <vtkUnstructuredGrid.h>
51 #include <vtkUnstructuredGridWriter.h>
52 #include <vtkXMLUnstructuredGridWriter.h>
53 #include <vtkDataCompressor.h>
54 #endif //CHASTE_VTK
55 
56 #include "VertexMesh.hpp"
57 #include "AbstractMeshWriter.hpp"
58 #include "NodeMap.hpp"
59 
60 // Forward declaration prevents circular include chain
61 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
62 class VertexMesh;
63 
64 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
65 struct MeshWriterIterators;
66 
70 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
71 class VertexMeshWriter : public AbstractMeshWriter<ELEMENT_DIM, SPACE_DIM>
72 {
73 private:
79 
82 
87 
88 #ifdef CHASTE_VTK
89 //Requires "sudo aptitude install libvtk5-dev" or similar
91  vtkUnstructuredGrid* mpVtkUnstructedMesh;
92 #endif //CHASTE_VTK
93 
94 public:
95 
103  VertexMeshWriter(const std::string& rDirectory,
104  const std::string& rBaseName,
105  const bool clearOutputDir=true);
106 
111 
113 
119 
126  void WriteVtkUsingMesh(VertexMesh<ELEMENT_DIM, SPACE_DIM>& rMesh, std::string stamp="");
127 
135 
142  void AddCellData(std::string dataName, std::vector<double> dataPayload);
143 
150  void AddPointData(std::string dataName, std::vector<double> dataPayload);
151 
155  std::vector<double> GetNextNode();
156 
161 
167 
172  void WriteFiles();
173 };
174 
175 #endif /*VERTEXMESHWRITER_HPP_*/
void AddCellData(std::string dataName, std::vector< double > dataPayload)
unsigned mNodeMapCurrentIndex
MeshWriterIterators< ELEMENT_DIM, SPACE_DIM > * mpIters
void WriteFilesUsingMesh(VertexMesh< ELEMENT_DIM, SPACE_DIM > &rMesh)
vtkUnstructuredGrid * mpVtkUnstructedMesh
VertexMeshWriter(const std::string &rDirectory, const std::string &rBaseName, const bool clearOutputDir=true)
VertexElementData GetNextElementWithFaces()
void WriteVtkUsingMesh(VertexMesh< ELEMENT_DIM, SPACE_DIM > &rMesh, std::string stamp="")
void MakeVtkMesh(VertexMesh< ELEMENT_DIM, SPACE_DIM > &rMesh)
std::vector< double > GetNextNode()
ElementData GetNextElement()
void AddPointData(std::string dataName, std::vector< double > dataPayload)
VertexMesh< ELEMENT_DIM, SPACE_DIM > * mpMesh