AbstractCardiacCellWithModifiers< CARDIAC_CELL > Class Template Reference

#include <AbstractCardiacCellWithModifiers.hpp>

Inheritance diagram for AbstractCardiacCellWithModifiers< CARDIAC_CELL >:

Collaboration diagram for AbstractCardiacCellWithModifiers< CARDIAC_CELL >:

Public Member Functions
	AbstractCardiacCellWithModifiers (boost::shared_ptr< AbstractIvpOdeSolver > pOdeSolver, unsigned numberOfStateVariables, unsigned voltageIndex, boost::shared_ptr< AbstractStimulusFunction > pIntracellularStimulus)
boost::shared_ptr < AbstractModifier >	GetModifier (const std::string &rModifierName)
bool	HasModifier (const std::string &rModifierName) const
void	SetModifier (const std::string &rModifierName, boost::shared_ptr< AbstractModifier > &pNewModifier)

Protected Member Functions
void	AddModifier (std::string modifierName, boost::shared_ptr< AbstractModifier > &pModifier)

Private Member Functions
template<class Archive >
void	save (Archive &archive, const unsigned int version) const
template<class Archive >
void	load (Archive &archive, const unsigned int version)

Private Attributes
std::map< std::string, boost::shared_ptr < AbstractModifier > * >	mModifiersMap

Friends
class	boost::serialization::access

Detailed Description

template<class CARDIAC_CELL>
class AbstractCardiacCellWithModifiers< CARDIAC_CELL >

A base class for cardiac cells that have been altered to include calls to subclasses of AbstractModifier when computing their derivatives.

Definition at line 62 of file AbstractCardiacCellWithModifiers.hpp.

Constructor & Destructor Documentation

template<class CARDIAC_CELL >

AbstractCardiacCellWithModifiers< CARDIAC_CELL >::AbstractCardiacCellWithModifiers	(	boost::shared_ptr< AbstractIvpOdeSolver >	pOdeSolver,
		unsigned	numberOfStateVariables,
		unsigned	voltageIndex,
		boost::shared_ptr< AbstractStimulusFunction >	pIntracellularStimulus
	)

Create a new cardiac cell.

This calls the main CARDIAC_CELL constructor, but also supplies modifiers for working with metadata-enabled CellML files.

Parameters

pOdeSolver	the ODE solver to use when simulating this cell
numberOfStateVariables	the size of the ODE system modelling this cell
voltageIndex	the index of the transmembrane potential within the vector of state variables
pIntracellularStimulus	the intracellular stimulus current

Definition at line 48 of file AbstractCardiacCellWithModifiers.cpp.

References AbstractCardiacCellWithModifiers< CARDIAC_CELL >::mModifiersMap.

Member Function Documentation

template<class CARDIAC_CELL >

void AbstractCardiacCellWithModifiers< CARDIAC_CELL >::AddModifier ( std::string  modifierName, boost::shared_ptr< AbstractModifier > &  pModifier  )

protected

Add a new modifier - should only be called by the subclass constructors. Each modifier pointer is set to a DummyModifier by this method.

Parameters

modifierName	The name which will act as a 'key' for this modifier.
pModifier	The pointer to the modifier in the concrete class.

Definition at line 41 of file AbstractCardiacCellWithModifiers.cpp.

template<class CARDIAC_CELL >

boost::shared_ptr< AbstractModifier > AbstractCardiacCellWithModifiers< CARDIAC_CELL >::GetModifier

(

const std::string &

rModifierName

)

Get access to a modifier

Parameters

rModifierName

The oxmeta name of the modifier to fetch.

Returns

a pointer to the specified modifier

Definition at line 58 of file AbstractCardiacCellWithModifiers.cpp.

References EXCEPTION.

template<class CARDIAC_CELL >

bool AbstractCardiacCellWithModifiers< CARDIAC_CELL >::HasModifier

(

const std::string &

rModifierName

)

const

Check for the presence of a modifier. To avoid the necessity of using try...catch around every call to GetModifier().

Parameters

rModifierName

The oxmeta name of a modifier

Returns

whether or not the cell has one of these modifiers.

Definition at line 68 of file AbstractCardiacCellWithModifiers.cpp.

template<class CARDIAC_CELL >

template<class Archive >

void AbstractCardiacCellWithModifiers< CARDIAC_CELL >::load ( Archive &  archive, const unsigned int  version  )

inlineprivate

Unarchive the member variables.

Parameters

archive
version

Definition at line 99 of file AbstractCardiacCellWithModifiers.hpp.

References AbstractCardiacCellWithModifiers< CARDIAC_CELL >::mModifiersMap, and NEVER_REACHED.

template<class CARDIAC_CELL >

template<class Archive >

void AbstractCardiacCellWithModifiers< CARDIAC_CELL >::save ( Archive &  archive, const unsigned int  version  ) const

inlineprivate

Archive the member variables.

Parameters

archive
version

Definition at line 74 of file AbstractCardiacCellWithModifiers.hpp.

References AbstractCardiacCellWithModifiers< CARDIAC_CELL >::mModifiersMap.

template<class CARDIAC_CELL >

void AbstractCardiacCellWithModifiers< CARDIAC_CELL >::SetModifier	(	const std::string &	rModifierName,
		boost::shared_ptr< AbstractModifier > &	pNewModifier
	)

Set a new modifier

Parameters

rModifierName	The oxmeta name of the modifier to replace.
pNewModifier	The new modifier object to use.

Definition at line 74 of file AbstractCardiacCellWithModifiers.cpp.

References EXCEPTION.

Friends And Related Function Documentation

template<class CARDIAC_CELL >

friend class boost::serialization::access

friend

Needed for serialization.

Definition at line 66 of file AbstractCardiacCellWithModifiers.hpp.

Member Data Documentation

template<class CARDIAC_CELL >

std::map<std::string, boost::shared_ptr<AbstractModifier>* > AbstractCardiacCellWithModifiers< CARDIAC_CELL >::mModifiersMap

private

A map between a string description and the location of the relevant modifier in concrete classes.

Definition at line 132 of file AbstractCardiacCellWithModifiers.hpp.

Referenced by AbstractCardiacCellWithModifiers< CARDIAC_CELL >::AbstractCardiacCellWithModifiers(), AbstractCardiacCellWithModifiers< CARDIAC_CELL >::load(), and AbstractCardiacCellWithModifiers< CARDIAC_CELL >::save().

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The documentation for this class was generated from the following files:

• heart/src/odes/AbstractCardiacCellWithModifiers.hpp
• heart/src/odes/AbstractCardiacCellWithModifiers.cpp