#include <AbstractLinearPdeSolver.hpp>

Inheritance diagram for AbstractLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >:

Collaboration diagram for AbstractLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >:

Public Member Functions
	AbstractLinearPdeSolver (AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *pMesh)

virtual	~AbstractLinearPdeSolver ()

virtual void	InitialiseForSolve (Vec initialSolution=NULL)

virtual void	PrepareForSetupLinearSystem (Vec currentSolution)

virtual void	FinaliseLinearSystem (Vec currentSolution)

virtual void	FollowingSolveLinearSystem (Vec currentSolution)

virtual void	SetupLinearSystem (Vec currentSolution, bool computeMatrix)=0

LinearSystem *	GetLinearSystem ()

Protected Attributes
LinearSystem *	mpLinearSystem

AbstractTetrahedralMesh < ELEMENT_DIM, SPACE_DIM > *	mpMesh

Detailed Description

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>
class AbstractLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >

Simple abstract class containing some common functionality between AbstractStaticLinearPdeSolver and AbstractDynamicLinearPdeSolver.

Definition at line 49 of file AbstractLinearPdeSolver.hpp.

Constructor & Destructor Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>

AbstractLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::AbstractLinearPdeSolver ( AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > * pMesh )

inline

Constructor.

Parameters

pMesh the mesh

Definition at line 66 of file AbstractLinearPdeSolver.hpp.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>

virtual AbstractLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::~AbstractLinearPdeSolver ( )

inlinevirtual

Destructor.

Definition at line 76 of file AbstractLinearPdeSolver.hpp.

References AbstractLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mpLinearSystem.

Member Function Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>

virtual void AbstractLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::FinaliseLinearSystem ( Vec currentSolution )

inlinevirtual

The static and dynamic Solve() implementations both call this immediately after SetupLinearSystem(). It can be overloaded if further work needs to be done.

Parameters

currentSolution The current solution

Reimplemented in AbstractExtendedBidomainSolver< ELEMENT_DIM, SPACE_DIM >, AbstractExtendedBidomainSolver< ELEM_DIM, SPACE_DIM >, AbstractExtendedBidomainSolver< DIM, DIM >, AbstractBidomainSolver< ELEMENT_DIM, SPACE_DIM >, and AbstractBidomainSolver< DIM, DIM >.

Definition at line 112 of file AbstractLinearPdeSolver.hpp.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>

virtual void AbstractLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::FollowingSolveLinearSystem ( Vec currentSolution )

inlinevirtual

The static and dynamic Solve() implementations both call this immediately after the linear solve is carried out (but before the timestep counter is incremented. This can be overloaded if further work on the solution vector needs to be done (for example, in operator splitting of the diffusion and reaction terms in the OperatorSplittingMonodomainSolver.

Parameters

currentSolution The current solution (solution of the linear system solve)

Reimplemented in OperatorSplittingMonodomainSolver< ELEMENT_DIM, SPACE_DIM >.

Definition at line 125 of file AbstractLinearPdeSolver.hpp.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>

LinearSystem* AbstractLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::GetLinearSystem ( )

inline

Returns: a pointer to the linear system.

Definition at line 145 of file AbstractLinearPdeSolver.hpp.

References AbstractLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mpLinearSystem.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>

void AbstractLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::InitialiseForSolve ( Vec initialSolution = NULL )

virtual

Initialise method: sets up the linear system (using the mesh to determine the number of unknowns per row to preallocate) if it is not already set up. Can use an initial solution as PETSc template, or base it on the mesh size.

Parameters

initialSolution Initial solution (defaults to NULL) for PETSc to use as a template.

Reimplemented in LinearParabolicPdeSystemWithCoupledOdeSystemSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >, SimpleLinearEllipticSolver< ELEMENT_DIM, SPACE_DIM >, SimpleLinearEllipticSolver< DIM, DIM >, MonodomainSolver< ELEMENT_DIM, SPACE_DIM >, OperatorSplittingMonodomainSolver< ELEMENT_DIM, SPACE_DIM >, CellBasedPdeSolver< DIM >, BidomainSolver< ELEMENT_DIM, SPACE_DIM >, AbstractExtendedBidomainSolver< ELEMENT_DIM, SPACE_DIM >, AbstractExtendedBidomainSolver< ELEM_DIM, SPACE_DIM >, AbstractExtendedBidomainSolver< DIM, DIM >, ExtendedBidomainSolver< ELEM_DIM, SPACE_DIM >, AbstractBidomainSolver< ELEMENT_DIM, SPACE_DIM >, and AbstractBidomainSolver< DIM, DIM >.

Definition at line 152 of file AbstractLinearPdeSolver.hpp.

References GenericEventHandler< 16, HeartEventHandler >::BeginEvent(), PetscTools::Destroy(), and GenericEventHandler< 16, HeartEventHandler >::EndEvent().

Referenced by AbstractBidomainSolver< ELEMENT_DIM, SPACE_DIM >::InitialiseForSolve(), AbstractExtendedBidomainSolver< ELEMENT_DIM, SPACE_DIM >::InitialiseForSolve(), OperatorSplittingMonodomainSolver< ELEMENT_DIM, SPACE_DIM >::InitialiseForSolve(), MonodomainSolver< ELEMENT_DIM, SPACE_DIM >::InitialiseForSolve(), and SimpleLinearEllipticSolver< ELEMENT_DIM, SPACE_DIM >::InitialiseForSolve().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>

virtual void AbstractLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::PrepareForSetupLinearSystem ( Vec currentSolution )

inlinevirtual

The static and dynamic Solve() implementations both call this before after SetupLinearSystem(). It can be overloaded if needed.

Parameters

currentSolution The current solution

Reimplemented in LinearParabolicPdeSystemWithCoupledOdeSystemSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >, AbstractExtendedBidomainSolver< ELEMENT_DIM, SPACE_DIM >, MonodomainSolver< ELEMENT_DIM, SPACE_DIM >, AbstractExtendedBidomainSolver< ELEM_DIM, SPACE_DIM >, AbstractExtendedBidomainSolver< DIM, DIM >, OperatorSplittingMonodomainSolver< ELEMENT_DIM, SPACE_DIM >, AbstractBidomainSolver< ELEMENT_DIM, SPACE_DIM >, and AbstractBidomainSolver< DIM, DIM >.

Definition at line 101 of file AbstractLinearPdeSolver.hpp.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>

virtual void AbstractLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::SetupLinearSystem	(	Vec	currentSolution,
		bool	computeMatrix
	)

pure virtual

The main Solve() methods in the child classes use this method. The concrete solver classes must implement it, depending on the the choice of numerical approach. The method should completely set up the linear system that has to be solved (that timestep, if dynamic PDEs).

Parameters

currentSolution	The current solution which can be used in setting up the linear system if needed (NULL if there isn't a current solution)
computeMatrix	Whether to compute the LHS matrix of the linear system (mainly for dynamic solves).

Implemented in LinearParabolicPdeSystemWithCoupledOdeSystemSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >, BidomainSolver< ELEMENT_DIM, SPACE_DIM >, MonodomainSolver< ELEMENT_DIM, SPACE_DIM >, SimpleLinearEllipticSolver< ELEMENT_DIM, SPACE_DIM >, SimpleLinearParabolicSolver< ELEMENT_DIM, SPACE_DIM >, SimpleLinearEllipticSolver< DIM, DIM >, OperatorSplittingMonodomainSolver< ELEMENT_DIM, SPACE_DIM >, and ExtendedBidomainSolver< ELEM_DIM, SPACE_DIM >.

Member Data Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>

LinearSystem* AbstractLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mpLinearSystem

protected

The linear system that will be set up and solved as part of the PDE solve.

Definition at line 54 of file AbstractLinearPdeSolver.hpp.

Referenced by AbstractLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::GetLinearSystem(), SimpleLinearParabolicSolver< ELEMENT_DIM, SPACE_DIM >::SetupLinearSystem(), SimpleLinearEllipticSolver< DIM, DIM >::SetupLinearSystem(), and AbstractLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::~AbstractLinearPdeSolver().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>

AbstractTetrahedralMesh<ELEMENT_DIM,SPACE_DIM>* AbstractLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mpMesh

protected

Pointer to the mesh.

Definition at line 57 of file AbstractLinearPdeSolver.hpp.

Referenced by BidomainSolver< ELEMENT_DIM, SPACE_DIM >::BidomainSolver(), ExtendedBidomainSolver< ELEM_DIM, SPACE_DIM >::ExtendedBidomainSolver(), MonodomainSolver< ELEMENT_DIM, SPACE_DIM >::MonodomainSolver(), and OperatorSplittingMonodomainSolver< ELEMENT_DIM, SPACE_DIM >::OperatorSplittingMonodomainSolver().

The documentation for this class was generated from the following file:

pde/src/solver/AbstractLinearPdeSolver.hpp

Public Member Functions

Protected Attributes

Detailed Description

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM> class AbstractLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>
class AbstractLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >