Chaste  Release::3.4
BoundaryNodeWriter< ELEMENT_DIM, SPACE_DIM > Class Template Reference

#include <BoundaryNodeWriter.hpp>

+ Inheritance diagram for BoundaryNodeWriter< ELEMENT_DIM, SPACE_DIM >:
+ Collaboration diagram for BoundaryNodeWriter< ELEMENT_DIM, SPACE_DIM >:

Public Member Functions

 BoundaryNodeWriter ()
 
void VisitAnyPopulation (AbstractCellPopulation< SPACE_DIM, SPACE_DIM > *pCellPopulation)
 
virtual void Visit (MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation)
 
virtual void Visit (CaBasedCellPopulation< SPACE_DIM > *pCellPopulation)
 
virtual void Visit (NodeBasedCellPopulation< SPACE_DIM > *pCellPopulation)
 
virtual void Visit (PottsBasedCellPopulation< SPACE_DIM > *pCellPopulation)
 
virtual void Visit (VertexBasedCellPopulation< SPACE_DIM > *pCellPopulation)
 
- Public Member Functions inherited from AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM >
 AbstractCellPopulationWriter (const std::string &rFileName)
 
virtual void WriteHeader (AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation)
 
- Public Member Functions inherited from AbstractCellBasedWriter< ELEMENT_DIM, SPACE_DIM >
 AbstractCellBasedWriter (const std::string &rFileName)
 
virtual ~AbstractCellBasedWriter ()
 
void CloseFile ()
 
virtual void OpenOutputFile (OutputFileHandler &rOutputFileHandler)
 
void OpenOutputFileForAppend (OutputFileHandler &rOutputFileHandler)
 
virtual void WriteTimeStamp ()
 
virtual void WriteNewline ()
 
void SetFileName (std::string fileName)
 
std::string GetFileName ()
 
- Public Member Functions inherited from Identifiable
virtual ~Identifiable ()
 
std::string GetIdentifier () const
 

Private Member Functions

template<class Archive >
void serialize (Archive &archive, const unsigned int version)
 

Friends

class boost::serialization::access
 

Additional Inherited Members

- Protected Attributes inherited from AbstractCellBasedWriter< ELEMENT_DIM, SPACE_DIM >
std::string mFileName
 
out_stream mpOutStream
 

Detailed Description

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
class BoundaryNodeWriter< ELEMENT_DIM, SPACE_DIM >

A class written using the visitor pattern for writing the boundary nodes of a population to file.

The output file is called results.vizboundarynodes by default.

Definition at line 49 of file BoundaryNodeWriter.hpp.

Constructor & Destructor Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
BoundaryNodeWriter< ELEMENT_DIM, SPACE_DIM >::BoundaryNodeWriter ( )

Default constructor.

Definition at line 45 of file BoundaryNodeWriter.cpp.

Member Function Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
template<class Archive >
void BoundaryNodeWriter< ELEMENT_DIM, SPACE_DIM >::serialize ( Archive &  archive,
const unsigned int  version 
)
inlineprivate

Serialize the object and its member variables.

Parameters
archivethe archive
versionthe current version of this class

Definition at line 61 of file BoundaryNodeWriter.hpp.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
void BoundaryNodeWriter< ELEMENT_DIM, SPACE_DIM >::Visit ( MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM > *  pCellPopulation)
virtual

Visit the population and write whether each node is a boundary node.

Outputs a line of space-separated values of the form: [node 0 is boundary node] [node 1 is boundary node] ...

where [node 0 is boundary node] is 1 if node 0 is a boundary node and 0 if it is not, and so on. Here the indexing of nodes is as given by the NodeIterator.

This line is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.

Parameters
pCellPopulationa pointer to the MeshBasedCellPopulation to visit.

Implements AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM >.

Definition at line 65 of file BoundaryNodeWriter.cpp.

References MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >::rGetMesh().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
void BoundaryNodeWriter< ELEMENT_DIM, SPACE_DIM >::Visit ( CaBasedCellPopulation< SPACE_DIM > *  pCellPopulation)
virtual

Visit the population and write whether each node is a boundary node.

Outputs a line of space-separated values of the form: [node 0 is boundary node] [node 1 is boundary node] ...

where [node 0 is boundary node] is 1 if node 0 is a boundary node and 0 if it is not, and so on. Here the indexing of nodes is as given by the NodeIterator.

This line is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.

Parameters
pCellPopulationa pointer to the CaBasedCellPopulation to visit.

Implements AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM >.

Definition at line 79 of file BoundaryNodeWriter.cpp.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
void BoundaryNodeWriter< ELEMENT_DIM, SPACE_DIM >::Visit ( NodeBasedCellPopulation< SPACE_DIM > *  pCellPopulation)
virtual

Visit the population and write whether each node is a boundary node.

Outputs a line of space-separated values of the form: [node 0 is boundary node] [node 1 is boundary node] ...

where [node 0 is boundary node] is 1 if node 0 is a boundary node and 0 if it is not, and so on. Here the indexing of nodes is as given by the NodeIterator.

This line is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.

Parameters
pCellPopulationa pointer to the NodeBasedCellPopulation to visit.

Implements AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM >.

Definition at line 85 of file BoundaryNodeWriter.cpp.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
void BoundaryNodeWriter< ELEMENT_DIM, SPACE_DIM >::Visit ( PottsBasedCellPopulation< SPACE_DIM > *  pCellPopulation)
virtual

Visit the population and write whether each node is a boundary node.

Outputs a line of space-separated values of the form: [node 0 is boundary node] [node 1 is boundary node] ...

where [node 0 is boundary node] is 1 if node 0 is a boundary node and 0 if it is not, and so on. Here the indexing of nodes is as given by the NodeIterator.

This line is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.

Parameters
pCellPopulationa pointer to the PottsBasedCellPopulation to visit.

Implements AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM >.

Definition at line 91 of file BoundaryNodeWriter.cpp.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
void BoundaryNodeWriter< ELEMENT_DIM, SPACE_DIM >::Visit ( VertexBasedCellPopulation< SPACE_DIM > *  pCellPopulation)
virtual

Visit the population and write whether each node is a boundary node.

Outputs a line of space-separated values of the form: [node 0 is boundary node] [node 1 is boundary node] ...

where [node 0 is boundary node] is 1 if node 0 is a boundary node and 0 if it is not, and so on. Here the indexing of nodes is as given by the NodeIterator.

This line is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.

Parameters
pCellPopulationa pointer to the VertexBasedCellPopulation to visit.

Implements AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM >.

Definition at line 97 of file BoundaryNodeWriter.cpp.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
void BoundaryNodeWriter< ELEMENT_DIM, SPACE_DIM >::VisitAnyPopulation ( AbstractCellPopulation< SPACE_DIM, SPACE_DIM > *  pCellPopulation)

Visit the population and write the data.

Parameters
pCellPopulationa pointer to the population to visit.

Definition at line 51 of file BoundaryNodeWriter.cpp.

References AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::rGetMesh().

Friends And Related Function Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
friend class boost::serialization::access
friend

Needed for serialization.

Definition at line 53 of file BoundaryNodeWriter.hpp.


The documentation for this class was generated from the following files: