CellwiseSourcePde< DIM > Class Template Reference

#include <CellwiseSourcePde.hpp>

Inheritance diagram for CellwiseSourcePde< DIM >:

Collaboration diagram for CellwiseSourcePde< DIM >:

Public Member Functions
	CellwiseSourcePde (AbstractCellPopulation< DIM, DIM > &rCellPopulation, double coefficient=0.0)
const AbstractCellPopulation < DIM > &	rGetCellPopulation () const
double	GetCoefficient () const
virtual double	ComputeConstantInUSourceTerm (const ChastePoint< DIM > &rX, Element< DIM, DIM > *pElement)
virtual double	ComputeLinearInUCoeffInSourceTerm (const ChastePoint< DIM > &rX, Element< DIM, DIM > *pElement)
virtual double	ComputeLinearInUCoeffInSourceTermAtNode (const Node< DIM > &rNode)
virtual c_matrix< double, DIM, DIM >	ComputeDiffusionTerm (const ChastePoint< DIM > &rX)
Public Member Functions inherited from AbstractLinearEllipticPde< DIM, DIM >
	AbstractLinearEllipticPde ()
virtual	~AbstractLinearEllipticPde ()
virtual double	ComputeConstantInUSourceTerm (const ChastePoint< SPACE_DIM > &rX, Element< ELEMENT_DIM, SPACE_DIM > *pElement)=0
virtual double	ComputeLinearInUCoeffInSourceTerm (const ChastePoint< SPACE_DIM > &rX, Element< ELEMENT_DIM, SPACE_DIM > *pElement)=0
virtual c_matrix< double, SPACE_DIM, SPACE_DIM >	ComputeDiffusionTerm (const ChastePoint< SPACE_DIM > &rX)=0
virtual double	ComputeConstantInUSourceTermAtNode (const Node< SPACE_DIM > &rNode)
virtual double	ComputeLinearInUCoeffInSourceTermAtNode (const Node< SPACE_DIM > &rNode)

Protected Attributes
AbstractCellPopulation< DIM, DIM > &	mrCellPopulation
double	mCoefficient

Private Member Functions
template<class Archive >
void	serialize (Archive &archive, const unsigned int version)

Friends
class	TestCellBasedPdes
class	boost::serialization::access

Detailed Description

template<unsigned DIM>
class CellwiseSourcePde< DIM >

A PDE which has a source at each non-apoptotic cell.

Definition at line 49 of file CellwiseSourcePde.hpp.

Constructor & Destructor Documentation

template<unsigned DIM>

CellwiseSourcePde< DIM >::CellwiseSourcePde	(	AbstractCellPopulation< DIM, DIM > &	rCellPopulation,
		double	coefficient = 0.0
	)

Constructor.

Parameters

rCellPopulation	reference to the cell population
coefficient	the coefficient of consumption of nutrient by cells (defaults to 0.0)

Definition at line 41 of file CellwiseSourcePde.cpp.

Member Function Documentation

template<unsigned DIM>

double CellwiseSourcePde< DIM >::ComputeConstantInUSourceTerm ( const ChastePoint< DIM > &  rX, Element< DIM, DIM > *  pElement  )

virtual

Overridden ComputeConstantInUSourceTerm() method.

Parameters

rX	The point in space
pElement	The element

Returns

the constant in u part of the source term, i.e g(x) in Div(D Grad u) + f(x)u + g(x) = 0.

Definition at line 60 of file CellwiseSourcePde.cpp.

template<unsigned DIM>

c_matrix< double, DIM, DIM > CellwiseSourcePde< DIM >::ComputeDiffusionTerm ( const ChastePoint< DIM > &  rX )

virtual

Overridden ComputeDiffusionTerm() method.

Parameters

rX	The point in space at which the diffusion term is computed

Returns

a matrix.

Definition at line 93 of file CellwiseSourcePde.cpp.

template<unsigned DIM>

double CellwiseSourcePde< DIM >::ComputeLinearInUCoeffInSourceTerm ( const ChastePoint< DIM > &  rX, Element< DIM, DIM > *  pElement  )

virtual

Overridden ComputeLinearInUCoeffInSourceTerm() method.

Parameters

rX	The point in space
pElement	the element

Returns

the coefficient of u in the linear part of the source term, i.e f(x) in Div(D Grad u) + f(x)u + g(x) = 0.

Definition at line 66 of file CellwiseSourcePde.cpp.

References NEVER_REACHED.

template<unsigned DIM>

double CellwiseSourcePde< DIM >::ComputeLinearInUCoeffInSourceTermAtNode ( const Node< DIM > &  rNode )

virtual

Overridden ComputeLinearInUCoeffInSourceTermAtNode() method.

Parameters

rNode

reference to the node

Returns

the coefficient of u in the linear part of the source term, i.e f(x) in Div(D Grad u) + f(x)u + g(x) = 0.

Definition at line 73 of file CellwiseSourcePde.cpp.

References Node< SPACE_DIM >::GetIndex().

template<unsigned DIM>

double CellwiseSourcePde< DIM >::GetCoefficient

(

)

const

Returns

mCoefficient (used in archiving).

Definition at line 54 of file CellwiseSourcePde.cpp.

template<unsigned DIM>

const AbstractCellPopulation< DIM, DIM > & CellwiseSourcePde< DIM >::rGetCellPopulation

(

)

const

Returns

const reference to the cell population (used in archiving).

Definition at line 48 of file CellwiseSourcePde.cpp.

template<unsigned DIM>

template<class Archive >

void CellwiseSourcePde< DIM >::serialize ( Archive &  archive, const unsigned int  version  )

inlineprivate

Serialize the PDE and its member variables.

Parameters

archive	the archive
version	the current version of this class

Definition at line 64 of file CellwiseSourcePde.hpp.

References CellwiseSourcePde< DIM >::mCoefficient.

Friends And Related Function Documentation

template<unsigned DIM>

friend class boost::serialization::access

friend

Needed for serialization.

Definition at line 56 of file CellwiseSourcePde.hpp.

Member Data Documentation

template<unsigned DIM>

double CellwiseSourcePde< DIM >::mCoefficient

protected

Coefficient of consumption of nutrient by cells.

Definition at line 76 of file CellwiseSourcePde.hpp.

Referenced by CellwiseSourcePde< DIM >::serialize().

template<unsigned DIM>

AbstractCellPopulation<DIM, DIM>& CellwiseSourcePde< DIM >::mrCellPopulation

protected

The cell population member.

Definition at line 73 of file CellwiseSourcePde.hpp.

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The documentation for this class was generated from the following files:

• cell_based/src/population/pdes/CellwiseSourcePde.hpp
• cell_based/src/population/pdes/CellwiseSourcePde.cpp