CryptCellsGenerator< CELL_CYCLE_MODEL > Class Template Reference

#include <CryptCellsGenerator.hpp>

Inheritance diagram for CryptCellsGenerator< CELL_CYCLE_MODEL >:

Collaboration diagram for CryptCellsGenerator< CELL_CYCLE_MODEL >:

Public Member Functions
void	Generate (std::vector< CellPtr > &rCells, AbstractMesh< 2, 2 > *pMesh, const std::vector< unsigned > locationIndices, bool randomBirthTimes, double y0=0.3, double y1=2.0, double y2=3.0, double y3=4.0, bool initialiseCells=false)
Public Member Functions inherited from CellsGenerator< CELL_CYCLE_MODEL, 2 >
void	GenerateBasic (std::vector< CellPtr > &rCells, unsigned numCells, const std::vector< unsigned > locationIndices=std::vector< unsigned >(), boost::shared_ptr< AbstractCellProperty > pCellProliferativeType=boost::shared_ptr< AbstractCellProperty >())
void	GenerateBasicRandom (std::vector< CellPtr > &rCells, unsigned numCells, boost::shared_ptr< AbstractCellProperty > pCellProliferativeType=boost::shared_ptr< AbstractCellProperty >())
void	GenerateGivenLocationIndices (std::vector< CellPtr > &rCells, const std::vector< unsigned > locationIndices, boost::shared_ptr< AbstractCellProperty > pCellProliferativeType=boost::shared_ptr< AbstractCellProperty >())

Detailed Description

template<class CELL_CYCLE_MODEL>
class CryptCellsGenerator< CELL_CYCLE_MODEL >

A subclass of CellsGenerator that generates cells for crypt simulations.

It is templated over types of cell-cycle model.

Definition at line 83 of file CryptCellsGenerator.hpp.

Member Function Documentation

template<class CELL_CYCLE_MODEL >

void CryptCellsGenerator< CELL_CYCLE_MODEL >::Generate	(	std::vector< CellPtr > &	rCells,
		AbstractMesh< 2, 2 > *	pMesh,
		const std::vector< unsigned >	locationIndices,
		bool	randomBirthTimes,
		double	y0 = 0.3,
		double	y1 = 2.0,
		double	y2 = 3.0,
		double	y3 = 4.0,
		bool	initialiseCells = false
	)

Generates cells of a specified cell cycle type under the correct crypt conditions and gives random ages if required, or gives them an age of 0.0 - creates least work for solver startup.

Parameters

rCells	An empty cells vector for this function to fill up
pMesh	The crypt mesh (can be cylindrical)
locationIndices	the node indices corresponding to real cells
randomBirthTimes	Whether to assign the cells random birth times (this can be expensive computationally with ODE models)
y0	below this line cells are generation 0 (defaults to 0.3)
y1	below this line cells are generation 1 (defaults to 2.0)
y2	below this line cells are generation 2 (defaults to 3.0)
y3	below this line cells are generation 3 (defaults to 4.0)
initialiseCells	whether to initialise the cell-cycle models as each cell is created

Definition at line 116 of file CryptCellsGenerator.hpp.

References AbstractMesh< ELEMENT_DIM, SPACE_DIM >::GetNode(), AbstractMesh< ELEMENT_DIM, SPACE_DIM >::GetNumNodes(), CellPropertyRegistry::Instance(), RandomNumberGenerator::Instance(), and RandomNumberGenerator::ranf().

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The documentation for this class was generated from the following file:

• crypt/src/cell/CryptCellsGenerator.hpp