AbstractOdeBasedPhaseBasedCellCycleModel.hpp

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#ifndef ABSTRACTODEBASEDPHASEBASEDCELLCYCLEMODEL_HPP_
#define ABSTRACTODEBASEDPHASEBASEDCELLCYCLEMODEL_HPP_
 
#include <vector>
 
#include "ChasteSerialization.hpp"
#include "ClassIsAbstract.hpp"
#include <boost/serialization/base_object.hpp>
 
#include "AbstractPhaseBasedCellCycleModel.hpp"
#include "CellCycleModelOdeHandler.hpp"
#include "SimulationTime.hpp"
 
class AbstractOdeBasedPhaseBasedCellCycleModel : public AbstractPhaseBasedCellCycleModel, public CellCycleModelOdeHandler
{
private:
 
    friend class boost::serialization::access;
    template<class Archive>
    void serialize(Archive & archive, const unsigned int version)
    {
        archive & boost::serialization::base_object<AbstractPhaseBasedCellCycleModel>(*this);
        archive & boost::serialization::base_object<CellCycleModelOdeHandler>(*this);
        archive & mDivideTime;
        archive & mG2PhaseStartTime;
    }
 
protected:
 
    double mDivideTime;
 
    double mG2PhaseStartTime;
 
    AbstractOdeBasedPhaseBasedCellCycleModel(const AbstractOdeBasedPhaseBasedCellCycleModel& rModel);
 
public:
 
    AbstractOdeBasedPhaseBasedCellCycleModel(double lastTime = SimulationTime::Instance()->GetTime(),
                                   boost::shared_ptr<AbstractCellCycleModelOdeSolver> pOdeSolver = boost::shared_ptr<AbstractCellCycleModelOdeSolver>());
 
    virtual ~AbstractOdeBasedPhaseBasedCellCycleModel();
 
    virtual void UpdateCellCyclePhase();
 
    double GetOdeStopTime();
 
    void SetBirthTime(double birthTime);
 
    virtual void ResetForDivision();
 
    virtual void OutputCellCycleModelParameters(out_stream& rParamsFile);
};
 
CLASS_IS_ABSTRACT(AbstractOdeBasedPhaseBasedCellCycleModel)
 
#endif /*ABSTRACTODEBASEDPHASEBASEDCELLCYCLEMODEL_HPP_*/