Chaste Commit::baa90ac2819b962188b7562f2326be23c47859a7
AbstractRushLarsenCardiacCell.hpp
1/*
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34*/
35
36#ifndef ABSTRACTRUSHLARSENCARDIACCELL_HPP_
37#define ABSTRACTRUSHLARSENCARDIACCELL_HPP_
38
40#include <boost/serialization/base_object.hpp>
41#include "ClassIsAbstract.hpp"
42
43#include "AbstractCardiacCell.hpp"
44#include "PetscTools.hpp"
45
59{
60private:
69 template<class Archive>
70 void serialize(Archive & archive, const unsigned int version)
71 {
72 // This calls serialize on the base class.
73 archive & boost::serialization::base_object<AbstractCardiacCell>(*this);
74 }
75
76public:
91 unsigned numberOfStateVariables,
92 unsigned voltageIndex,
93 boost::shared_ptr<AbstractStimulusFunction> pIntracellularStimulus);
94
97
110 OdeSolution Compute(double tStart, double tEnd, double tSamp=0.0);
111
122 void ComputeExceptVoltage(double tStart, double tEnd);
123
131 void SolveAndUpdateState(double tStart, double tEnd);
132
133private:
134// LCOV_EXCL_START
142 void EvaluateYDerivatives(double time, const std::vector<double> &rY, std::vector<double> &rDY)
143 {
145 }
146// LCOV_EXCL_STOP
147
148protected:
159 virtual void ComputeOneStepExceptVoltage(const std::vector<double> &rDY,
160 const std::vector<double> &rAlphaOrTau,
161 const std::vector<double> &rBetaOrInf)=0;
162
168 void UpdateTransmembranePotential(const std::vector<double> &rDY);
169
180 virtual void EvaluateEquations(double time,
181 std::vector<double> &rDY,
182 std::vector<double> &rAlphaOrTau,
183 std::vector<double> &rBetaOrInf)=0;
184};
185
187
188#endif // ABSTRACTRUSHLARSENCARDIACCELL_HPP_
#define CLASS_IS_ABSTRACT(T)
#define NEVER_REACHED
virtual void ComputeOneStepExceptVoltage(const std::vector< double > &rDY, const std::vector< double > &rAlphaOrTau, const std::vector< double > &rBetaOrInf)=0
void serialize(Archive &archive, const unsigned int version)
OdeSolution Compute(double tStart, double tEnd, double tSamp=0.0)
void SolveAndUpdateState(double tStart, double tEnd)
virtual void EvaluateEquations(double time, std::vector< double > &rDY, std::vector< double > &rAlphaOrTau, std::vector< double > &rBetaOrInf)=0
void UpdateTransmembranePotential(const std::vector< double > &rDY)
friend class boost::serialization::access
void ComputeExceptVoltage(double tStart, double tEnd)
void EvaluateYDerivatives(double time, const std::vector< double > &rY, std::vector< double > &rDY)